Wall clock time and date at job start Tue Mar 31 2020 14:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35769 * 116.99607 * 2 1 4 4 C 1.35594 * 126.08578 * 175.62447 * 3 2 1 5 5 C 1.41051 * 107.80253 * 180.14395 * 4 3 2 6 6 C 1.47721 * 125.98500 * 179.86372 * 5 4 3 7 7 O 1.21568 * 120.00039 * 359.71878 * 6 5 4 8 8 N 1.34779 * 120.00007 * 179.71964 * 6 5 4 9 9 C 1.46500 * 119.99725 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.52261 * 325.07924 * 9 8 6 11 11 C 1.53040 * 109.49689 * 204.99639 * 9 8 6 12 12 C 1.53036 * 109.53765 * 301.41484 * 11 9 8 13 13 C 1.53191 * 109.31481 * 298.63092 * 12 11 9 14 14 H 1.09000 * 109.58607 * 294.85109 * 13 12 11 15 15 C 1.52995 * 109.58961 * 174.56482 * 13 12 11 16 16 N 1.46933 * 108.77232 * 54.63538 * 13 12 11 17 17 C 1.36933 * 120.62901 * 126.37097 * 16 13 12 18 18 H 1.08007 * 120.00111 * 330.70541 * 17 16 13 19 19 C 1.38810 * 120.00010 * 150.70333 * 17 16 13 20 20 N 1.31621 * 120.00014 * 344.15902 * 19 17 16 21 21 Si 1.86797 * 120.00246 * 164.15988 * 19 17 16 22 22 H 1.48498 * 109.47417 * 59.99481 * 21 19 17 23 23 H 1.48500 * 109.47705 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47037 * 299.99944 * 21 19 17 25 25 C 1.46923 * 118.74076 * 306.39370 * 16 13 12 26 26 N 1.31872 * 108.03590 * 359.60226 * 5 4 3 27 27 N 1.35844 * 126.08557 * 355.33094 * 3 2 1 28 28 C 1.46499 * 125.95050 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.47173 * 174.91194 * 1 2 3 30 30 H 1.08998 * 109.47399 * 294.91656 * 1 2 3 31 31 H 1.09000 * 109.47572 * 54.92120 * 1 2 3 32 32 H 1.08002 * 126.09795 * 0.02825 * 4 3 2 33 33 H 0.96997 * 120.00139 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46071 * 181.38946 * 11 9 8 35 35 H 1.08998 * 109.46114 * 61.43327 * 11 9 8 36 36 H 1.09004 * 109.49720 * 178.68251 * 12 11 9 37 37 H 1.09003 * 109.49895 * 58.58926 * 12 11 9 38 38 H 1.09007 * 109.47000 * 60.28597 * 15 13 12 39 39 H 1.08998 * 109.47311 * 180.28297 * 15 13 12 40 40 H 1.08997 * 109.47215 * 300.28680 * 15 13 12 41 41 H 0.96998 * 120.00096 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58778 * 293.82394 * 25 16 13 43 43 H 1.08992 * 109.70361 * 173.46668 * 25 16 13 44 44 H 1.09002 * 109.46754 * 276.30712 * 28 27 3 45 45 H 1.08999 * 109.47285 * 36.30197 * 28 27 3 46 46 H 1.08990 * 109.47563 * 156.30888 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3813 1.4254 0.0836 5 6 3.5959 2.8192 0.0532 6 6 4.9064 3.4973 0.1230 7 8 5.9255 2.8419 0.2211 8 7 4.9722 4.8428 0.0780 9 6 6.2719 5.5152 0.1467 10 1 6.9369 4.9563 0.8052 11 6 6.0854 6.9328 0.6925 12 6 5.1260 7.7079 -0.2135 13 6 5.7254 7.8064 -1.6198 14 1 6.6358 8.4049 -1.5879 15 6 4.7143 8.4604 -2.5637 16 7 6.0424 6.4525 -2.0946 17 6 5.5620 6.0041 -3.2959 18 1 4.6248 6.3816 -3.6776 19 6 6.2795 5.0644 -4.0232 20 7 7.5429 4.8338 -3.7350 21 14 5.4521 4.1269 -5.4109 22 1 4.9718 5.0855 -6.4385 23 1 6.4266 3.1901 -6.0257 24 1 4.2998 3.3603 -4.8724 25 6 6.8843 5.5888 -1.2556 26 7 2.4222 3.4107 -0.0541 27 7 1.4335 2.4194 -0.0894 28 6 -0.0092 2.6473 -0.2023 29 1 -0.3634 -1.0237 -0.0911 30 1 -0.3634 0.4329 0.9320 31 1 -0.3634 0.5906 -0.8410 32 1 4.1449 0.6656 0.1616 33 1 4.1591 5.3658 -0.0006 34 1 7.0492 7.4410 0.7202 35 1 5.6726 6.8826 1.7000 36 1 4.9753 8.7098 0.1887 37 1 4.1697 7.1869 -0.2611 38 1 4.4771 9.4619 -2.2046 39 1 5.1408 8.5249 -3.5647 40 1 3.8049 7.8604 -2.5941 41 1 8.0444 4.1774 -4.2434 42 1 7.8892 6.0065 -1.1940 43 1 6.9301 4.5890 -1.6873 44 1 -0.3111 2.5544 -1.2455 45 1 -0.5417 1.9089 0.3971 46 1 -0.2483 3.6480 0.1574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071673769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:23 Heat of formation + Delta-G solvation = 50.645471 kcal Electronic energy + Delta-G solvation = -28783.684524 eV Core-core repulsion = 24905.371745 eV Total energy + Delta-G solvation = -3878.312779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.55564 -39.35025 -38.31739 -37.30322 -34.03709 -33.49635 -32.65173 -30.91275 -29.91080 -29.67953 -28.00894 -26.62902 -25.98901 -24.89645 -23.13465 -22.08764 -21.47303 -20.43689 -19.83598 -18.63136 -18.19128 -16.82072 -16.40876 -16.10712 -15.73216 -15.41000 -14.98356 -14.87413 -14.63926 -14.16204 -14.04288 -13.87515 -13.78740 -13.38100 -13.24279 -13.04829 -12.93281 -12.69592 -12.41237 -11.85548 -11.61018 -11.43995 -11.15567 -11.09775 -10.88954 -10.82067 -10.70613 -10.62587 -10.31607 -10.26116 -9.88649 -9.60917 -9.40713 -9.35581 -9.12193 -8.37102 -8.35884 -8.27494 -6.51175 -5.66353 -3.09598 1.55333 2.12723 2.34677 2.76689 3.44297 3.51528 3.52291 3.71400 3.96164 4.17410 4.49254 4.58419 4.59848 4.78895 4.91064 4.95503 5.17529 5.33478 5.38933 5.43987 5.47899 5.58938 5.62413 5.68640 5.93464 5.98146 6.08981 6.19345 6.22183 6.40107 6.42002 6.47837 6.52362 6.60519 6.68902 6.76232 6.97244 7.11582 7.19925 7.23341 7.40113 7.48615 7.78114 7.92445 8.21049 8.58059 8.81857 9.32485 9.97073 10.53096 11.41858 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.004666 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.080301 B = 5998.803793 C = 6811.883728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.289 6.289 3 C 0.262 3.738 4 C -0.233 4.233 5 C 0.071 3.929 6 C 0.596 3.404 7 O -0.531 6.531 8 N -0.682 5.682 9 C 0.117 3.883 10 H 0.079 0.921 11 C -0.118 4.118 12 C -0.132 4.132 13 C 0.166 3.834 14 H 0.025 0.975 15 C -0.135 4.135 16 N -0.582 5.582 17 C -0.248 4.248 18 H 0.066 0.934 19 C 0.007 3.993 20 N -0.899 5.899 21 Si 0.895 3.105 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.286 1.286 25 C 0.162 3.838 26 N -0.248 5.248 27 N -0.397 5.397 28 C 0.078 3.922 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.253 0.747 42 H 0.027 0.973 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 -2.949 10.470 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.195 6.195 3 C 0.096 3.904 4 C -0.263 4.263 5 C -0.097 4.097 6 C 0.379 3.621 7 O -0.405 6.405 8 N -0.333 5.333 9 C 0.011 3.989 10 H 0.097 0.903 11 C -0.156 4.156 12 C -0.171 4.171 13 C 0.060 3.940 14 H 0.042 0.958 15 C -0.193 4.193 16 N -0.305 5.305 17 C -0.378 4.378 18 H 0.084 0.916 19 C -0.192 4.192 20 N -0.543 5.543 21 Si 0.725 3.275 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.035 3.965 26 N -0.078 5.078 27 N -0.194 5.194 28 C -0.063 4.063 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.182 0.818 33 H 0.238 0.762 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.115 0.885 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.409 -2.710 10.342 18.755 hybrid contribution -0.854 -1.039 -0.911 1.624 sum -16.263 -3.749 9.431 19.170 Atomic orbital electron populations 1.23617 0.78358 1.05118 1.01341 1.86297 1.21326 1.21807 1.90097 1.19520 0.91124 0.78864 1.00884 1.20369 0.91933 0.95846 1.18150 1.22067 0.93113 0.93003 1.01514 1.16767 0.85478 0.82467 0.77422 1.90782 1.34124 1.65249 1.50395 1.45723 1.10576 1.05198 1.71768 1.21865 0.84281 0.91510 1.01233 0.90344 1.21684 1.00545 0.95507 0.97861 1.22080 0.98686 0.98556 0.97792 1.20447 0.94936 0.87792 0.90867 0.95784 1.21790 0.99403 0.97708 1.00392 1.44018 1.59352 1.08153 1.19008 1.19006 1.01370 1.21487 0.95914 0.91645 1.25012 0.94794 1.01644 0.97702 1.69971 1.06595 1.35574 1.42147 0.86497 0.78729 0.80018 0.82271 1.21087 1.21649 1.21292 1.21183 0.91078 0.98262 0.85958 1.77749 0.95296 1.10742 1.24037 1.49034 1.07057 1.03080 1.60265 1.22487 0.75134 1.05344 1.03300 0.87460 0.92036 0.91759 0.81791 0.76241 0.91000 0.92969 0.92889 0.92560 0.94476 0.92096 0.92968 0.93649 0.95514 0.88546 0.90483 0.88788 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.37 101.05 0.95 1.02 16 2 O -0.29 -3.47 10.57 -19.02 -0.20 -3.67 16 3 C 0.26 3.84 7.78 -16.72 -0.13 3.71 16 4 C -0.23 -4.04 10.59 -39.46 -0.42 -4.46 16 5 C 0.07 1.35 7.09 -82.91 -0.59 0.76 16 6 C 0.60 12.55 7.79 -12.38 -0.10 12.45 16 7 O -0.53 -12.59 16.56 5.31 0.09 -12.51 16 8 N -0.68 -13.38 4.91 -54.67 -0.27 -13.65 16 9 C 0.12 2.31 2.81 -67.81 -0.19 2.12 16 10 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 11 C -0.12 -1.92 5.59 -26.69 -0.15 -2.07 16 12 C -0.13 -2.19 5.20 -26.61 -0.14 -2.33 16 13 C 0.17 3.36 3.49 -67.60 -0.24 3.12 16 14 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 15 C -0.14 -2.53 7.95 37.16 0.30 -2.23 16 16 N -0.58 -14.21 2.91 -164.78 -0.48 -14.69 16 17 C -0.25 -6.73 8.60 -15.06 -0.13 -6.86 16 18 H 0.07 1.75 6.23 -52.48 -0.33 1.42 16 19 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 20 N -0.90 -26.91 11.21 55.49 0.62 -26.29 16 21 Si 0.89 22.80 29.58 -169.99 -5.03 17.77 16 22 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 C 0.16 3.95 4.89 -3.71 -0.02 3.93 16 26 N -0.25 -4.25 12.26 33.34 0.41 -3.84 16 27 N -0.40 -5.48 4.03 -68.19 -0.28 -5.75 16 28 C 0.08 0.63 9.62 59.85 0.58 1.20 16 29 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.30 6.58 -51.93 -0.34 -0.04 16 31 H 0.06 0.36 5.92 -51.93 -0.31 0.05 16 32 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 33 H 0.40 7.44 6.47 -40.82 -0.26 7.17 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.95 6.40 -51.93 -0.33 0.62 16 38 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.06 1.24 7.65 -51.93 -0.40 0.84 16 40 H 0.05 0.99 7.43 -51.93 -0.39 0.60 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 2.77 6.12 -51.93 -0.32 2.45 16 44 H 0.08 0.54 7.72 -51.93 -0.40 0.14 16 45 H 0.09 0.46 4.51 -51.93 -0.23 0.23 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -34.46 363.19 -6.66 -41.12 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.64 Total: 5.54 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -0.36 Total: 10.48 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.01 Total: -64.22 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: -0.11 Total: -16.18 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.46 -6.66 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.768 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds