Wall clock time and date at job start Tue Mar 31 2020 14:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35769 * 116.99607 * 2 1 4 4 C 1.35594 * 126.08578 * 175.62447 * 3 2 1 5 5 C 1.41051 * 107.80253 * 180.14395 * 4 3 2 6 6 C 1.47721 * 125.98500 * 179.86372 * 5 4 3 7 7 O 1.21568 * 120.00039 * 359.71878 * 6 5 4 8 8 N 1.34779 * 120.00007 * 179.71964 * 6 5 4 9 9 C 1.46500 * 119.99725 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.52261 * 325.07924 * 9 8 6 11 11 C 1.53040 * 109.49689 * 204.99639 * 9 8 6 12 12 C 1.53036 * 109.53765 * 301.41484 * 11 9 8 13 13 C 1.53191 * 109.31481 * 298.63092 * 12 11 9 14 14 H 1.09000 * 109.58607 * 294.85109 * 13 12 11 15 15 C 1.52995 * 109.58961 * 174.56482 * 13 12 11 16 16 N 1.46933 * 108.77232 * 54.63538 * 13 12 11 17 17 C 1.36933 * 120.62901 * 126.37097 * 16 13 12 18 18 H 1.08007 * 120.00111 * 330.70541 * 17 16 13 19 19 C 1.38810 * 120.00010 * 150.70333 * 17 16 13 20 20 N 1.31621 * 120.00014 * 344.15902 * 19 17 16 21 21 Si 1.86797 * 120.00246 * 164.15988 * 19 17 16 22 22 H 1.48498 * 109.47417 * 59.99481 * 21 19 17 23 23 H 1.48500 * 109.47705 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47037 * 299.99944 * 21 19 17 25 25 C 1.46923 * 118.74076 * 306.39370 * 16 13 12 26 26 N 1.31872 * 108.03590 * 359.60226 * 5 4 3 27 27 N 1.35844 * 126.08557 * 355.33094 * 3 2 1 28 28 C 1.46499 * 125.95050 * 0.02562 * 27 3 2 29 29 H 1.09005 * 109.47173 * 174.91194 * 1 2 3 30 30 H 1.08998 * 109.47399 * 294.91656 * 1 2 3 31 31 H 1.09000 * 109.47572 * 54.92120 * 1 2 3 32 32 H 1.08002 * 126.09795 * 0.02825 * 4 3 2 33 33 H 0.96997 * 120.00139 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46071 * 181.38946 * 11 9 8 35 35 H 1.08998 * 109.46114 * 61.43327 * 11 9 8 36 36 H 1.09004 * 109.49720 * 178.68251 * 12 11 9 37 37 H 1.09003 * 109.49895 * 58.58926 * 12 11 9 38 38 H 1.09007 * 109.47000 * 60.28597 * 15 13 12 39 39 H 1.08998 * 109.47311 * 180.28297 * 15 13 12 40 40 H 1.08997 * 109.47215 * 300.28680 * 15 13 12 41 41 H 0.96998 * 120.00096 * 180.02562 * 20 19 17 42 42 H 1.09003 * 109.58778 * 293.82394 * 25 16 13 43 43 H 1.08992 * 109.70361 * 173.46668 * 25 16 13 44 44 H 1.09002 * 109.46754 * 276.30712 * 28 27 3 45 45 H 1.08999 * 109.47285 * 36.30197 * 28 27 3 46 46 H 1.08990 * 109.47563 * 156.30888 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2098 0.0000 4 6 3.3813 1.4254 0.0836 5 6 3.5959 2.8192 0.0532 6 6 4.9064 3.4973 0.1230 7 8 5.9255 2.8419 0.2211 8 7 4.9722 4.8428 0.0780 9 6 6.2719 5.5152 0.1467 10 1 6.9369 4.9563 0.8052 11 6 6.0854 6.9328 0.6925 12 6 5.1260 7.7079 -0.2135 13 6 5.7254 7.8064 -1.6198 14 1 6.6358 8.4049 -1.5879 15 6 4.7143 8.4604 -2.5637 16 7 6.0424 6.4525 -2.0946 17 6 5.5620 6.0041 -3.2959 18 1 4.6248 6.3816 -3.6776 19 6 6.2795 5.0644 -4.0232 20 7 7.5429 4.8338 -3.7350 21 14 5.4521 4.1269 -5.4109 22 1 4.9718 5.0855 -6.4385 23 1 6.4266 3.1901 -6.0257 24 1 4.2998 3.3603 -4.8724 25 6 6.8843 5.5888 -1.2556 26 7 2.4222 3.4107 -0.0541 27 7 1.4335 2.4194 -0.0894 28 6 -0.0092 2.6473 -0.2023 29 1 -0.3634 -1.0237 -0.0911 30 1 -0.3634 0.4329 0.9320 31 1 -0.3634 0.5906 -0.8410 32 1 4.1449 0.6656 0.1616 33 1 4.1591 5.3658 -0.0006 34 1 7.0492 7.4410 0.7202 35 1 5.6726 6.8826 1.7000 36 1 4.9753 8.7098 0.1887 37 1 4.1697 7.1869 -0.2611 38 1 4.4771 9.4619 -2.2046 39 1 5.1408 8.5249 -3.5647 40 1 3.8049 7.8604 -2.5941 41 1 8.0444 4.1774 -4.2434 42 1 7.8892 6.0065 -1.1940 43 1 6.9301 4.5890 -1.6873 44 1 -0.3111 2.5544 -1.2455 45 1 -0.5417 1.9089 0.3971 46 1 -0.2483 3.6480 0.1574 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071673769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:22 Heat of formation + Delta-G solvation = 24.413253 kcal Electronic energy + Delta-G solvation = -28784.822038 eV Core-core repulsion = 24905.371745 eV Total energy + Delta-G solvation = -3879.450293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.70897 -40.90837 -39.44891 -38.87671 -35.79688 -34.56603 -34.44181 -32.37949 -31.73051 -30.94859 -28.99125 -27.92357 -27.24844 -26.65262 -24.53168 -23.82816 -22.54538 -22.07080 -21.27052 -20.34919 -19.33505 -18.22046 -17.71817 -17.55207 -17.19177 -16.70781 -16.33322 -16.20977 -16.01139 -15.75248 -15.50958 -15.31325 -15.00078 -14.73341 -14.62837 -14.44886 -14.03597 -13.96000 -13.92139 -13.62030 -12.97951 -12.86479 -12.61014 -12.57602 -12.42704 -12.38705 -12.29257 -12.12513 -12.08248 -11.80226 -11.55977 -11.28582 -11.13228 -11.03167 -10.50328 -10.27056 -9.93313 -9.54929 -8.54823 -7.80610 -5.24590 0.23924 1.04267 1.11396 1.37336 1.42506 1.46395 1.82674 2.28265 2.46217 2.50922 3.13041 3.34995 3.65910 3.83205 4.00886 4.03316 4.12557 4.16930 4.21781 4.25255 4.30055 4.37316 4.51131 4.51797 4.64795 4.67499 4.70576 4.76275 4.83768 4.98240 4.99144 5.05808 5.09670 5.13385 5.22578 5.28414 5.35123 5.58046 5.62783 5.67426 5.75122 5.76482 6.14091 6.28400 6.46348 6.65611 7.20819 7.23030 7.95500 8.45797 9.24592 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.004666 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.080301 B = 5998.803793 C = 6811.883728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 O -0.299 6.299 3 C 0.282 3.718 4 C -0.269 4.269 5 C 0.045 3.955 6 C 0.590 3.410 7 O -0.571 6.571 8 N -0.674 5.674 9 C 0.124 3.876 10 H 0.073 0.927 11 C -0.109 4.109 12 C -0.121 4.121 13 C 0.155 3.845 14 H 0.018 0.982 15 C -0.128 4.128 16 N -0.595 5.595 17 C -0.235 4.235 18 H 0.072 0.928 19 C -0.052 4.052 20 N -0.934 5.934 21 Si 0.946 3.054 22 H -0.269 1.269 23 H -0.300 1.300 24 H -0.291 1.291 25 C 0.171 3.829 26 N -0.257 5.257 27 N -0.383 5.383 28 C 0.060 3.940 29 H 0.133 0.867 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.155 0.845 33 H 0.409 0.591 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.035 0.965 40 H 0.047 0.953 41 H 0.243 0.757 42 H 0.004 0.996 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.131 0.869 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.691 -1.767 11.703 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.205 6.205 3 C 0.114 3.886 4 C -0.300 4.300 5 C -0.122 4.122 6 C 0.374 3.626 7 O -0.449 6.449 8 N -0.324 5.324 9 C 0.018 3.982 10 H 0.091 0.909 11 C -0.147 4.147 12 C -0.159 4.159 13 C 0.050 3.950 14 H 0.036 0.964 15 C -0.185 4.185 16 N -0.319 5.319 17 C -0.366 4.366 18 H 0.090 0.910 19 C -0.247 4.247 20 N -0.581 5.581 21 Si 0.776 3.224 22 H -0.194 1.194 23 H -0.226 1.226 24 H -0.218 1.218 25 C 0.044 3.956 26 N -0.089 5.089 27 N -0.181 5.181 28 C -0.077 4.077 29 H 0.151 0.849 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.172 0.828 33 H 0.246 0.754 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.149 0.851 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.532 -1.479 11.583 22.756 hybrid contribution 0.218 -1.427 -1.273 1.925 sum -19.313 -2.906 10.310 22.085 Atomic orbital electron populations 1.24120 0.75193 1.07565 1.03150 1.86332 1.24569 1.20075 1.89550 1.19327 0.90537 0.80076 0.98668 1.20408 0.93618 0.95332 1.20613 1.21710 0.92739 0.93627 1.04080 1.17189 0.86112 0.82777 0.76524 1.90742 1.35846 1.66095 1.52225 1.45648 1.10634 1.04908 1.71167 1.21661 0.84237 0.94198 0.98093 0.90919 1.21670 1.01395 0.92435 0.99231 1.21969 0.98088 1.00828 0.95060 1.20766 0.95442 0.85274 0.93563 0.96407 1.21716 0.98295 0.99728 0.98783 1.44238 1.59023 1.10223 1.18404 1.19317 1.00967 1.20163 0.96147 0.91042 1.25669 0.95331 1.03415 1.00303 1.70136 1.07946 1.36488 1.43520 0.85648 0.77324 0.78931 0.80489 1.19395 1.22643 1.21835 1.20858 0.90790 0.95479 0.88446 1.77618 0.95256 1.11880 1.24119 1.49416 1.08470 1.02119 1.58131 1.23091 0.71848 1.07456 1.05340 0.84869 0.89809 0.90277 0.82774 0.75377 0.90201 0.89630 0.88923 0.92453 0.90466 0.94605 0.93377 0.94789 0.97821 0.93543 0.88826 0.85120 0.87305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 9.37 113.37 1.06 1.00 16 2 O -0.30 -6.52 10.57 -90.96 -0.96 -7.48 16 3 C 0.28 7.94 7.78 83.46 0.65 8.59 16 4 C -0.27 -9.64 10.59 22.35 0.24 -9.40 16 5 C 0.04 1.73 7.09 42.34 0.30 2.03 16 6 C 0.59 25.92 7.79 86.75 0.68 26.60 16 7 O -0.57 -28.97 16.56 -3.93 -0.07 -29.03 16 8 N -0.67 -26.69 4.91 -445.14 -2.19 -28.88 16 9 C 0.12 4.96 2.81 45.07 0.13 5.09 16 10 H 0.07 2.99 7.58 -2.38 -0.02 2.98 16 11 C -0.11 -3.30 5.59 30.62 0.17 -3.13 16 12 C -0.12 -3.59 5.20 30.67 0.16 -3.43 16 13 C 0.15 6.01 3.49 44.97 0.16 6.17 16 14 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 15 C -0.13 -4.48 7.95 71.98 0.57 -3.90 16 16 N -0.60 -29.46 2.91 -675.23 -1.96 -31.42 16 17 C -0.24 -12.98 8.60 84.03 0.72 -12.26 16 18 H 0.07 3.81 6.23 -2.91 -0.02 3.79 16 19 C -0.05 -3.08 4.94 84.86 0.42 -2.66 16 20 N -0.93 -58.95 11.21 21.65 0.24 -58.71 16 21 Si 0.95 48.27 29.58 68.60 2.03 50.30 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 23 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 24 H -0.29 -14.92 7.11 99.48 0.71 -14.21 16 25 C 0.17 8.73 4.89 86.36 0.42 9.15 16 26 N -0.26 -8.58 12.26 -48.42 -0.59 -9.18 16 27 N -0.38 -9.72 4.03 -480.58 -1.94 -11.66 16 28 C 0.06 0.73 9.62 127.77 1.23 1.96 16 29 H 0.13 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.08 0.41 6.58 -2.39 -0.02 0.40 16 31 H 0.08 0.52 5.92 -2.39 -0.01 0.50 16 32 H 0.15 5.58 8.06 -2.91 -0.02 5.55 16 33 H 0.41 14.80 6.47 -92.71 -0.60 14.21 16 34 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.09 16 36 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.06 1.73 6.40 -2.39 -0.02 1.71 16 38 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.03 1.41 7.65 -2.39 -0.02 1.39 16 40 H 0.05 1.71 7.43 -2.39 -0.02 1.69 16 41 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.05 2.84 6.12 -2.39 -0.01 2.83 16 44 H 0.09 0.90 7.72 -2.39 -0.02 0.89 16 45 H 0.13 0.63 4.51 -2.39 -0.01 0.62 16 46 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -81.26 363.19 1.88 -79.38 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.41 Total: 20.87 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 6.90 Total: 25.80 kcal Atomic # 7 Polarization: -133.40 SS G_CDS: -6.44 Total: -139.84 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -1.03 Total: -36.51 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -81.26 1.88 -79.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071673769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.798 kcal (2) G-P(sol) polarization free energy of solvation -81.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds