Wall clock time and date at job start Tue Mar 31 2020 14:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35859 * 117.00101 * 2 1 4 4 N 1.30809 * 126.05552 * 359.69547 * 3 2 1 5 5 N 1.39922 * 108.87610 * 179.84847 * 4 3 2 6 6 C 1.46500 * 125.68773 * 180.14521 * 5 4 3 7 7 C 1.34164 * 108.62334 * 0.42277 * 5 4 3 8 8 C 1.38133 * 107.50920 * 359.75509 * 7 5 4 9 9 C 1.47248 * 126.44815 * 179.97438 * 8 7 5 10 10 O 1.21620 * 120.00168 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99696 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99716 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.49363 * 35.07356 * 12 11 9 14 14 C 1.53038 * 109.49500 * 155.16357 * 12 11 9 15 15 C 1.53043 * 109.53679 * 58.59294 * 14 12 11 16 16 C 1.53191 * 109.31627 * 61.36113 * 15 14 12 17 17 H 1.09001 * 109.58317 * 65.14973 * 16 15 14 18 18 C 1.53000 * 109.58877 * 185.57740 * 16 15 14 19 19 N 1.46926 * 108.77487 * 305.36728 * 16 15 14 20 20 C 1.36936 * 120.63211 * 233.62575 * 19 16 15 21 21 H 1.08002 * 119.99354 * 29.00418 * 20 19 16 22 22 C 1.38804 * 120.00080 * 208.99913 * 20 19 16 23 23 N 1.31618 * 120.00299 * 15.03238 * 22 20 19 24 24 Si 1.86807 * 119.99921 * 195.02995 * 22 20 19 25 25 H 1.48491 * 109.47193 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46855 * 120.00353 * 24 22 20 27 27 H 1.48500 * 109.47024 * 239.99913 * 24 22 20 28 28 C 1.46931 * 118.73731 * 53.60532 * 19 16 15 29 29 H 1.08999 * 109.46681 * 299.99658 * 1 2 3 30 30 H 1.08996 * 109.46966 * 59.99472 * 1 2 3 31 31 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46685 * 270.32864 * 6 5 4 33 33 H 1.08997 * 109.47170 * 30.32254 * 6 5 4 34 34 H 1.08999 * 109.47150 * 150.32539 * 6 5 4 35 35 H 1.07997 * 126.24366 * 179.77752 * 7 5 4 36 36 H 0.96995 * 120.00224 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.45805 * 178.60708 * 14 12 11 38 38 H 1.08999 * 109.46615 * 298.57006 * 14 12 11 39 39 H 1.09007 * 109.49674 * 301.40847 * 15 14 12 40 40 H 1.09005 * 109.52580 * 181.33437 * 15 14 12 41 41 H 1.08995 * 109.47006 * 179.28548 * 18 16 15 42 42 H 1.08997 * 109.46884 * 299.29030 * 18 16 15 43 43 H 1.09006 * 109.46675 * 59.29164 * 18 16 15 44 44 H 0.97000 * 120.00506 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.58467 * 186.60361 * 28 19 16 46 46 H 1.09003 * 109.70316 * 66.25132 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.4531 2.3766 -0.0056 5 7 2.4282 3.3801 0.0001 6 6 2.1705 4.8222 -0.0005 7 6 3.6386 2.8013 0.0000 8 6 3.4452 1.4335 -0.0001 9 6 4.4956 0.4016 -0.0008 10 8 4.1912 -0.7759 -0.0012 11 7 5.7943 0.7619 -0.0008 12 6 6.8393 -0.2648 -0.0009 13 1 6.5094 -1.1196 -0.5914 14 6 8.1212 0.3111 -0.6069 15 6 8.5664 1.5315 0.2023 16 6 8.8625 1.1036 1.6431 17 1 9.7157 0.4254 1.6547 18 6 9.1735 2.3384 2.4913 19 7 7.6813 0.4184 2.1851 20 6 7.1177 0.8268 3.3644 21 1 7.1908 1.8606 3.6683 22 6 6.4525 -0.0878 4.1692 23 7 6.6083 -1.3788 3.9659 24 14 5.3360 0.5136 5.5408 25 1 5.3314 1.9984 5.5601 26 1 3.9556 0.0177 5.3088 27 1 5.8330 0.0027 6.8436 28 6 7.1159 -0.7131 1.4376 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1062 5.1793 -1.0283 33 1 1.2306 5.0235 0.5135 34 1 2.9828 5.3367 0.5129 35 1 4.5904 3.3116 0.0003 36 1 6.0371 1.7010 -0.0001 37 1 8.9055 -0.4455 -0.5840 38 1 7.9335 0.6083 -1.6387 39 1 7.7726 2.2785 0.2004 40 1 9.4661 1.9557 -0.2435 41 1 9.3714 2.0330 3.5187 42 1 10.0500 2.8452 2.0875 43 1 8.3204 3.0167 2.4718 44 1 6.1437 -2.0180 4.5285 45 1 6.1849 -1.0321 1.9063 46 1 7.8248 -1.5411 1.4324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071738444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:30 Heat of formation + Delta-G solvation = 36.585604 kcal Electronic energy + Delta-G solvation = -29030.213501 eV Core-core repulsion = 25151.291040 eV Total energy + Delta-G solvation = -3878.922461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.34188 -39.02559 -38.12505 -37.22532 -33.93097 -32.86435 -32.64342 -31.12775 -29.89977 -29.51330 -27.84676 -26.42149 -25.86559 -24.86973 -22.68186 -22.08384 -20.98799 -20.45472 -19.99572 -18.59765 -17.85087 -16.79133 -16.19157 -16.17795 -15.60175 -15.29754 -14.96345 -14.90546 -14.63057 -14.06777 -13.86863 -13.73118 -13.48371 -13.18041 -12.92038 -12.80403 -12.68940 -12.53568 -12.37522 -11.86196 -11.78840 -11.14371 -11.13390 -11.12321 -10.90296 -10.84956 -10.68970 -10.64910 -10.32281 -10.26059 -9.89362 -9.44747 -9.37427 -9.12845 -9.04248 -8.39250 -8.36359 -8.09578 -6.51502 -5.66357 -3.10488 1.61683 2.21879 2.49012 3.34829 3.43429 3.48862 3.53070 3.95471 4.16027 4.39532 4.57035 4.69627 4.93668 5.08016 5.19138 5.28968 5.30892 5.38190 5.43422 5.48884 5.54203 5.56990 5.58472 5.67535 5.80806 5.89275 6.08318 6.17934 6.22690 6.37681 6.39826 6.49925 6.60748 6.68205 6.78816 6.81368 7.01064 7.09964 7.20727 7.31787 7.54578 7.70340 7.83029 7.92684 8.35007 8.58163 9.09670 9.32098 9.97049 10.52713 11.41383 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.005213 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.563859 B = 5370.400595 C = 6000.518999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.264 6.264 3 C 0.314 3.686 4 N -0.358 5.358 5 N -0.354 5.354 6 C 0.103 3.897 7 C 0.120 3.880 8 C -0.276 4.276 9 C 0.591 3.409 10 O -0.537 6.537 11 N -0.701 5.701 12 C 0.122 3.878 13 H 0.075 0.925 14 C -0.118 4.118 15 C -0.129 4.129 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.248 4.248 21 H 0.067 0.933 22 C 0.007 3.993 23 N -0.897 5.897 24 Si 0.893 3.107 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.161 3.839 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.188 0.812 36 H 0.389 0.611 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.252 0.748 45 H 0.098 0.902 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 12.328 -11.153 17.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.166 6.166 3 C 0.109 3.891 4 N -0.198 5.198 5 N -0.136 5.136 6 C -0.038 4.038 7 C -0.031 4.031 8 C -0.291 4.291 9 C 0.377 3.623 10 O -0.414 6.414 11 N -0.351 5.351 12 C 0.016 3.984 13 H 0.093 0.907 14 C -0.156 4.156 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.041 0.959 18 C -0.192 4.192 19 N -0.305 5.305 20 C -0.378 4.378 21 H 0.085 0.915 22 C -0.192 4.192 23 N -0.541 5.541 24 Si 0.724 3.276 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.219 1.219 28 C 0.034 3.966 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.204 0.796 36 H 0.223 0.777 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.267 11.711 -11.043 17.273 hybrid contribution -0.003 0.499 0.889 1.019 sum -6.270 12.210 -10.154 17.073 Atomic orbital electron populations 1.22993 0.78231 1.03594 1.01663 1.86549 1.21345 1.20469 1.88238 1.20419 0.90273 0.85095 0.93296 1.77231 1.13246 0.94637 1.34718 1.47577 1.03199 1.06259 1.56594 1.21942 1.04450 0.73901 1.03536 1.23017 0.90999 0.92284 0.96818 1.19889 0.92019 0.92754 1.24481 1.16938 0.81640 0.87303 0.76381 1.90779 1.82224 1.17980 1.50465 1.45614 1.04811 1.09681 1.75029 1.21715 0.85702 0.90238 1.00772 0.90680 1.21688 0.97446 0.98655 0.97848 1.22060 0.99623 0.97009 0.98162 1.20451 0.90273 0.92929 0.90514 0.95859 1.21790 0.99163 0.97488 1.00794 1.44038 1.28077 1.35883 1.22530 1.19066 1.29835 0.92632 0.96266 0.91546 1.25024 1.01383 0.95192 0.97575 1.69978 1.43780 0.99961 1.40427 0.86375 0.81172 0.77959 0.82143 1.20511 1.21658 1.21857 1.21202 1.00095 0.88470 0.86805 0.92629 0.92740 0.88173 0.90494 0.89095 0.88905 0.79555 0.77712 0.91223 0.93096 0.92838 0.93017 0.92078 0.94528 0.93064 0.93745 0.88353 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 101.05 1.08 1.49 16 2 O -0.26 -4.95 9.99 -24.65 -0.25 -5.20 16 3 C 0.31 5.78 7.85 -16.66 -0.13 5.65 16 4 N -0.36 -5.69 11.90 30.79 0.37 -5.33 16 5 N -0.35 -4.45 3.97 -67.60 -0.27 -4.72 16 6 C 0.10 0.71 11.44 59.85 0.68 1.39 16 7 C 0.12 1.60 10.98 -16.57 -0.18 1.41 16 8 C -0.28 -4.99 6.14 -104.95 -0.64 -5.64 16 9 C 0.59 12.36 7.77 -12.60 -0.10 12.27 16 10 O -0.54 -13.47 16.09 -0.09 0.00 -13.47 16 11 N -0.70 -12.92 4.91 -54.82 -0.27 -13.19 16 12 C 0.12 2.38 2.81 -67.81 -0.19 2.19 16 13 H 0.08 1.53 7.58 -51.93 -0.39 1.14 16 14 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 15 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 16 C 0.17 3.20 3.50 -67.60 -0.24 2.97 16 17 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 18 C -0.13 -2.38 7.94 37.16 0.30 -2.08 16 19 N -0.58 -13.82 2.91 -164.78 -0.48 -14.30 16 20 C -0.25 -6.56 8.60 -15.06 -0.13 -6.69 16 21 H 0.07 1.71 6.21 -52.49 -0.33 1.38 16 22 C 0.01 0.21 4.96 -17.43 -0.09 0.12 16 23 N -0.90 -26.92 11.14 55.49 0.62 -26.30 16 24 Si 0.89 22.53 29.58 -169.99 -5.03 17.51 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 C 0.16 3.91 4.89 -3.71 -0.02 3.89 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.19 1.70 7.46 -52.49 -0.39 1.31 16 36 H 0.39 6.09 5.69 -40.82 -0.23 5.86 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.20 7.62 -51.93 -0.40 0.80 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.89 7.45 -51.93 -0.39 0.51 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.10 2.86 6.06 -51.93 -0.31 2.54 16 46 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -36.56 370.64 -6.65 -43.20 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.98 Total: 3.40 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 0.06 Total: 12.82 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -0.03 Total: -63.84 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.25 Total: -18.67 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.56 -6.65 -43.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071738444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.790 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds