Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35859 * 117.00101 * 2 1 4 4 N 1.30809 * 126.05552 * 359.69547 * 3 2 1 5 5 N 1.39922 * 108.87610 * 179.84847 * 4 3 2 6 6 C 1.46500 * 125.68773 * 180.14521 * 5 4 3 7 7 C 1.34164 * 108.62334 * 0.42277 * 5 4 3 8 8 C 1.38133 * 107.50920 * 359.75509 * 7 5 4 9 9 C 1.47248 * 126.44815 * 179.97438 * 8 7 5 10 10 O 1.21620 * 120.00168 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99696 * 0.02562 * 9 8 7 12 12 C 1.46505 * 119.99716 * 179.97438 * 11 9 8 13 13 H 1.09006 * 109.49363 * 35.07356 * 12 11 9 14 14 C 1.53038 * 109.49500 * 155.16357 * 12 11 9 15 15 C 1.53043 * 109.53679 * 58.59294 * 14 12 11 16 16 C 1.53191 * 109.31627 * 61.36113 * 15 14 12 17 17 H 1.09001 * 109.58317 * 65.14973 * 16 15 14 18 18 C 1.53000 * 109.58877 * 185.57740 * 16 15 14 19 19 N 1.46926 * 108.77487 * 305.36728 * 16 15 14 20 20 C 1.36936 * 120.63211 * 233.62575 * 19 16 15 21 21 H 1.08002 * 119.99354 * 29.00418 * 20 19 16 22 22 C 1.38804 * 120.00080 * 208.99913 * 20 19 16 23 23 N 1.31618 * 120.00299 * 15.03238 * 22 20 19 24 24 Si 1.86807 * 119.99921 * 195.02995 * 22 20 19 25 25 H 1.48491 * 109.47193 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46855 * 120.00353 * 24 22 20 27 27 H 1.48500 * 109.47024 * 239.99913 * 24 22 20 28 28 C 1.46931 * 118.73731 * 53.60532 * 19 16 15 29 29 H 1.08999 * 109.46681 * 299.99658 * 1 2 3 30 30 H 1.08996 * 109.46966 * 59.99472 * 1 2 3 31 31 H 1.08999 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46685 * 270.32864 * 6 5 4 33 33 H 1.08997 * 109.47170 * 30.32254 * 6 5 4 34 34 H 1.08999 * 109.47150 * 150.32539 * 6 5 4 35 35 H 1.07997 * 126.24366 * 179.77752 * 7 5 4 36 36 H 0.96995 * 120.00224 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.45805 * 178.60708 * 14 12 11 38 38 H 1.08999 * 109.46615 * 298.57006 * 14 12 11 39 39 H 1.09007 * 109.49674 * 301.40847 * 15 14 12 40 40 H 1.09005 * 109.52580 * 181.33437 * 15 14 12 41 41 H 1.08995 * 109.47006 * 179.28548 * 18 16 15 42 42 H 1.08997 * 109.46884 * 299.29030 * 18 16 15 43 43 H 1.09006 * 109.46675 * 59.29164 * 18 16 15 44 44 H 0.97000 * 120.00506 * 179.97438 * 23 22 20 45 45 H 1.09004 * 109.58467 * 186.60361 * 28 19 16 46 46 H 1.09003 * 109.70316 * 66.25132 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 7 1.4531 2.3766 -0.0056 5 7 2.4282 3.3801 0.0001 6 6 2.1705 4.8222 -0.0005 7 6 3.6386 2.8013 0.0000 8 6 3.4452 1.4335 -0.0001 9 6 4.4956 0.4016 -0.0008 10 8 4.1912 -0.7759 -0.0012 11 7 5.7943 0.7619 -0.0008 12 6 6.8393 -0.2648 -0.0009 13 1 6.5094 -1.1196 -0.5914 14 6 8.1212 0.3111 -0.6069 15 6 8.5664 1.5315 0.2023 16 6 8.8625 1.1036 1.6431 17 1 9.7157 0.4254 1.6547 18 6 9.1735 2.3384 2.4913 19 7 7.6813 0.4184 2.1851 20 6 7.1177 0.8268 3.3644 21 1 7.1908 1.8606 3.6683 22 6 6.4525 -0.0878 4.1692 23 7 6.6083 -1.3788 3.9659 24 14 5.3360 0.5136 5.5408 25 1 5.3314 1.9984 5.5601 26 1 3.9556 0.0177 5.3088 27 1 5.8330 0.0027 6.8436 28 6 7.1159 -0.7131 1.4376 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1062 5.1793 -1.0283 33 1 1.2306 5.0235 0.5135 34 1 2.9828 5.3367 0.5129 35 1 4.5904 3.3116 0.0003 36 1 6.0371 1.7010 -0.0001 37 1 8.9055 -0.4455 -0.5840 38 1 7.9335 0.6083 -1.6387 39 1 7.7726 2.2785 0.2004 40 1 9.4661 1.9557 -0.2435 41 1 9.3714 2.0330 3.5187 42 1 10.0500 2.8452 2.0875 43 1 8.3204 3.0167 2.4718 44 1 6.1437 -2.0180 4.5285 45 1 6.1849 -1.0321 1.9063 46 1 7.8248 -1.5411 1.4324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071738444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = 7.494809 kcal Electronic energy + Delta-G solvation = -29031.474972 eV Core-core repulsion = 25151.291040 eV Total energy + Delta-G solvation = -3880.183932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.49360 -40.60058 -39.33859 -38.86205 -35.65803 -34.43451 -33.83263 -32.55469 -31.69132 -30.86430 -28.83149 -27.84895 -27.16201 -26.55485 -24.05210 -23.72235 -22.23212 -21.83907 -21.41130 -20.26867 -19.09634 -18.21716 -17.90144 -17.33417 -17.08890 -16.79615 -16.25596 -16.01812 -15.92433 -15.78268 -15.44846 -15.36337 -14.92317 -14.62410 -14.36117 -14.10335 -13.82050 -13.63658 -13.47312 -13.41933 -12.96810 -12.87500 -12.82690 -12.57781 -12.47299 -12.35504 -12.16100 -12.06029 -12.01663 -11.91524 -11.49889 -11.14340 -10.97312 -10.78485 -10.48299 -10.21382 -9.87095 -9.43443 -8.51934 -7.77095 -5.21750 0.52944 1.14727 1.29576 1.38644 1.43002 1.50193 2.23264 2.51733 2.52430 2.68717 3.39760 3.42532 3.70022 3.79864 4.10178 4.18705 4.22885 4.26231 4.28732 4.33291 4.40510 4.51504 4.53074 4.58215 4.62566 4.71864 4.75393 4.78026 4.83463 4.91160 5.04618 5.13306 5.19255 5.20253 5.35391 5.41330 5.65548 5.69869 5.76859 5.83717 5.85095 5.90542 6.16443 6.49478 6.51330 6.90761 7.23607 7.59363 7.99368 8.49731 9.28105 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010690 B = 0.005213 C = 0.004665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.563859 B = 5370.400595 C = 6000.518999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.288 3.712 4 N -0.368 5.368 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.154 3.846 8 C -0.329 4.329 9 C 0.585 3.415 10 O -0.597 6.597 11 N -0.685 5.685 12 C 0.131 3.869 13 H 0.057 0.943 14 C -0.109 4.109 15 C -0.117 4.117 16 C 0.153 3.847 17 H 0.010 0.990 18 C -0.128 4.128 19 N -0.593 5.593 20 C -0.226 4.226 21 H 0.083 0.917 22 C -0.059 4.059 23 N -0.939 5.939 24 Si 0.944 3.056 25 H -0.253 1.253 26 H -0.314 1.314 27 H -0.296 1.296 28 C 0.171 3.829 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.236 0.764 36 H 0.406 0.594 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.239 0.761 45 H 0.044 0.956 46 H -0.008 1.008 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 17.511 -12.823 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.206 6.206 3 C 0.084 3.916 4 N -0.209 5.209 5 N -0.121 5.121 6 C -0.050 4.050 7 C -0.001 4.001 8 C -0.344 4.344 9 C 0.374 3.626 10 O -0.479 6.479 11 N -0.336 5.336 12 C 0.024 3.976 13 H 0.075 0.925 14 C -0.147 4.147 15 C -0.156 4.156 16 C 0.047 3.953 17 H 0.027 0.973 18 C -0.185 4.185 19 N -0.316 5.316 20 C -0.356 4.356 21 H 0.100 0.900 22 C -0.254 4.254 23 N -0.587 5.587 24 Si 0.775 3.225 25 H -0.176 1.176 26 H -0.242 1.242 27 H -0.223 1.223 28 C 0.044 3.956 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.253 0.747 36 H 0.243 0.757 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -5.135 17.016 -12.732 21.863 hybrid contribution -0.330 -0.994 1.371 1.725 sum -5.465 16.022 -11.361 20.387 Atomic orbital electron populations 1.23217 0.76075 1.05080 1.02310 1.86474 1.23832 1.21849 1.88453 1.20735 0.90864 0.85485 0.94511 1.77185 1.14350 0.94535 1.34786 1.48156 1.02509 1.07689 1.53765 1.22523 1.06164 0.70459 1.05868 1.23559 0.92765 0.90471 0.93260 1.19872 0.91221 0.94334 1.29020 1.17474 0.82755 0.87244 0.75155 1.90735 1.83177 1.20683 1.53262 1.45404 1.03833 1.10219 1.74186 1.21413 0.88161 0.90799 0.97201 0.92490 1.21657 0.94698 0.98865 0.99500 1.21958 1.02042 0.96883 0.94711 1.20801 0.87847 0.93060 0.93556 0.97259 1.21724 1.01168 0.96678 0.98951 1.44258 1.29804 1.35597 1.21967 1.19475 1.27318 0.92862 0.95976 0.89966 1.25726 1.03901 0.95391 1.00334 1.70164 1.45641 1.01086 1.41837 0.85518 0.78258 0.78857 0.79855 1.17623 1.24227 1.22307 1.20837 0.96716 0.88388 0.89662 0.92495 0.91410 0.86391 0.87920 0.88731 0.85435 0.74739 0.75670 0.91266 0.89470 0.91119 0.88998 0.94917 0.90556 0.92405 0.95178 0.93769 0.99054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.70 113.37 1.21 1.97 16 2 O -0.30 -12.01 9.99 -86.85 -0.87 -12.88 16 3 C 0.29 10.79 7.85 85.70 0.67 11.47 16 4 N -0.37 -11.27 11.90 -169.98 -2.02 -13.29 16 5 N -0.34 -7.38 3.97 -367.79 -1.46 -8.84 16 6 C 0.09 0.78 11.44 127.77 1.46 2.24 16 7 C 0.15 3.54 10.98 84.31 0.93 4.46 16 8 C -0.33 -11.79 6.14 -20.08 -0.12 -11.91 16 9 C 0.59 25.09 7.77 86.61 0.67 25.77 16 10 O -0.60 -32.08 16.09 1.02 0.02 -32.06 16 11 N -0.69 -24.60 4.91 -445.60 -2.19 -26.78 16 12 C 0.13 5.13 2.81 45.06 0.13 5.26 16 13 H 0.06 2.44 7.58 -2.38 -0.02 2.42 16 14 C -0.11 -3.10 5.59 30.62 0.17 -2.93 16 15 C -0.12 -3.03 5.21 30.67 0.16 -2.87 16 16 C 0.15 5.51 3.50 44.97 0.16 5.67 16 17 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 18 C -0.13 -4.00 7.94 71.98 0.57 -3.43 16 19 N -0.59 -28.04 2.91 -675.23 -1.96 -30.00 16 20 C -0.23 -11.87 8.60 84.03 0.72 -11.15 16 21 H 0.08 4.04 6.21 -2.91 -0.02 4.02 16 22 C -0.06 -3.44 4.96 84.86 0.42 -3.02 16 23 N -0.94 -59.91 11.14 21.65 0.24 -59.67 16 24 Si 0.94 47.54 29.58 68.60 2.03 49.57 16 25 H -0.25 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.31 -16.87 7.11 99.48 0.71 -16.16 16 27 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 28 C 0.17 8.70 4.89 86.36 0.42 9.13 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.24 2.81 7.46 -2.91 -0.02 2.79 16 36 H 0.41 11.27 5.69 -92.71 -0.53 10.74 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 1.63 6.40 -2.38 -0.02 1.61 16 40 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.03 1.19 7.62 -2.39 -0.02 1.17 16 42 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.73 7.45 -2.38 -0.02 1.71 16 44 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.04 2.75 6.06 -2.39 -0.01 2.73 16 46 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: -1.00 -89.94 370.64 1.82 -88.11 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.47 Total: 15.20 kcal Atomic # 6 Polarization: 23.07 SS G_CDS: 7.57 Total: 30.64 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -7.39 Total: -138.59 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.85 Total: -44.94 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal Total: -89.94 1.82 -88.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071738444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.606 kcal (2) G-P(sol) polarization free energy of solvation -89.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds