Wall clock time and date at job start Tue Mar 31 2020 14:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35851 * 117.00266 * 2 1 4 4 N 1.30816 * 126.05738 * 0.35538 * 3 2 1 5 5 N 1.39914 * 108.87793 * 180.14172 * 4 3 2 6 6 C 1.46507 * 125.68308 * 179.80753 * 5 4 3 7 7 C 1.34153 * 108.62995 * 359.54624 * 5 4 3 8 8 C 1.38143 * 107.50545 * 0.26564 * 7 5 4 9 9 C 1.47242 * 126.44898 * 179.97438 * 8 7 5 10 10 O 1.21619 * 120.00494 * 180.02562 * 9 8 7 11 11 N 1.34784 * 120.00219 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00468 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.49388 * 324.99644 * 12 11 9 14 14 C 1.53036 * 109.49758 * 204.93789 * 12 11 9 15 15 C 1.53039 * 109.53971 * 301.40774 * 14 12 11 16 16 C 1.53194 * 109.31216 * 298.64221 * 15 14 12 17 17 H 1.09000 * 109.58167 * 294.69591 * 16 15 14 18 18 C 1.53003 * 109.58468 * 174.41834 * 16 15 14 19 19 N 1.46924 * 108.77859 * 54.63063 * 16 15 14 20 20 C 1.36932 * 120.63052 * 126.41190 * 19 16 15 21 21 H 1.07996 * 120.00261 * 330.19754 * 20 19 16 22 22 C 1.38815 * 119.99929 * 150.19390 * 20 19 16 23 23 N 1.31622 * 120.00085 * 344.47795 * 22 20 19 24 24 Si 1.86802 * 120.00227 * 164.47765 * 22 20 19 25 25 H 1.48501 * 109.47007 * 90.00038 * 24 22 20 26 26 H 1.48499 * 109.47254 * 210.00141 * 24 22 20 27 27 H 1.48498 * 109.46882 * 330.00213 * 24 22 20 28 28 C 1.46992 * 118.75296 * 306.39468 * 19 16 15 29 29 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46980 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.46995 * 60.00152 * 1 2 3 32 32 H 1.08991 * 109.47381 * 269.69065 * 6 5 4 33 33 H 1.09010 * 109.46703 * 149.69183 * 6 5 4 34 34 H 1.08996 * 109.47280 * 29.69483 * 6 5 4 35 35 H 1.08002 * 126.25330 * 180.23016 * 7 5 4 36 36 H 0.97005 * 119.99527 * 0.02562 * 11 9 8 37 37 H 1.08994 * 109.46507 * 61.43453 * 14 12 11 38 38 H 1.09004 * 109.46008 * 181.40293 * 14 12 11 39 39 H 1.09002 * 109.49194 * 58.58634 * 15 14 12 40 40 H 1.08998 * 109.50177 * 178.68671 * 15 14 12 41 41 H 1.08999 * 109.47311 * 59.99917 * 18 16 15 42 42 H 1.08997 * 109.47071 * 179.97438 * 18 16 15 43 43 H 1.08991 * 109.47329 * 299.99785 * 18 16 15 44 44 H 0.96993 * 120.00244 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.57883 * 293.82320 * 28 19 16 46 46 H 1.08999 * 109.62990 * 173.38494 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 0.0066 5 7 2.4282 3.3800 0.0007 6 6 2.1704 4.8222 0.0012 7 6 3.6386 2.8014 0.0005 8 6 3.4452 1.4335 0.0000 9 6 4.4955 0.4016 -0.0010 10 8 4.1912 -0.7759 -0.0018 11 7 5.7943 0.7619 -0.0010 12 6 6.8393 -0.2648 -0.0025 13 1 6.5091 -1.1208 0.5861 14 6 8.1206 0.3097 0.6061 15 6 8.5666 1.5320 -0.1996 16 6 8.8639 1.1076 -1.6412 17 1 9.7188 0.4315 -1.6541 18 6 9.1755 2.3446 -2.4861 19 7 7.6831 0.4238 -2.1860 20 6 7.1211 0.8347 -3.3652 21 1 7.1836 1.8715 -3.6608 22 6 6.4711 -0.0816 -4.1806 23 7 6.6488 -1.3721 -3.9925 24 14 5.3442 0.5170 -5.5449 25 1 6.1292 0.6956 -6.7927 26 1 4.2704 -0.4828 -5.7744 27 1 4.7371 1.8140 -5.1521 28 6 7.1165 -0.7100 -1.4417 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.1064 5.1802 -1.0263 33 1 2.9827 5.3363 0.5152 34 1 1.2304 5.0231 0.5151 35 1 4.5904 3.3117 0.0000 36 1 6.0371 1.7011 0.0001 37 1 7.9321 0.6042 1.6384 38 1 8.9050 -0.4468 0.5819 39 1 7.7727 2.2790 -0.1966 40 1 9.4661 1.9545 0.2481 41 1 10.0441 2.8574 -2.0729 42 1 9.3872 2.0406 -3.5112 43 1 8.3178 3.0170 -2.4760 44 1 6.1943 -2.0123 -4.5621 45 1 7.8274 -1.5365 -1.4381 46 1 6.1859 -1.0281 -1.9116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071738446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:37 Heat of formation + Delta-G solvation = 36.333698 kcal Electronic energy + Delta-G solvation = -29021.999722 eV Core-core repulsion = 25143.066338 eV Total energy + Delta-G solvation = -3878.933384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.34416 -39.02734 -38.12900 -37.22460 -33.93017 -32.86527 -32.63561 -31.12738 -29.90513 -29.51703 -27.84973 -26.42241 -25.86552 -24.86112 -22.68510 -22.08818 -20.98950 -20.45408 -19.99658 -18.59820 -17.85307 -16.79410 -16.19536 -16.17173 -15.60248 -15.29422 -14.95511 -14.91540 -14.63093 -14.06761 -13.87754 -13.73308 -13.48687 -13.18146 -12.89805 -12.83293 -12.69775 -12.52332 -12.37625 -11.86595 -11.78858 -11.14354 -11.13309 -11.11679 -10.90704 -10.85931 -10.69164 -10.63309 -10.33288 -10.27135 -9.90038 -9.44903 -9.38090 -9.13141 -9.04356 -8.39384 -8.36054 -8.09786 -6.50317 -5.66689 -3.10847 1.61709 2.21687 2.48724 3.34513 3.42791 3.49924 3.52315 3.95057 4.15688 4.38495 4.57275 4.69464 4.94645 5.07459 5.19444 5.28670 5.30545 5.38213 5.43368 5.48717 5.54030 5.56752 5.58347 5.67384 5.80591 5.89077 6.08417 6.18001 6.22818 6.37962 6.40086 6.49990 6.60739 6.68115 6.78605 6.81096 7.01240 7.10256 7.20693 7.31572 7.54038 7.70093 7.81423 7.92119 8.34548 8.58202 9.09173 9.31977 9.96930 10.53282 11.41281 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.005203 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.252158 B = 5380.568828 C = 6011.252199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.264 6.264 3 C 0.314 3.686 4 N -0.358 5.358 5 N -0.354 5.354 6 C 0.103 3.897 7 C 0.120 3.880 8 C -0.276 4.276 9 C 0.591 3.409 10 O -0.538 6.538 11 N -0.701 5.701 12 C 0.122 3.878 13 H 0.075 0.925 14 C -0.118 4.118 15 C -0.129 4.129 16 C 0.165 3.835 17 H 0.024 0.976 18 C -0.135 4.135 19 N -0.581 5.581 20 C -0.250 4.250 21 H 0.066 0.934 22 C 0.008 3.992 23 N -0.897 5.897 24 Si 0.894 3.106 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.162 3.838 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.188 0.812 36 H 0.389 0.611 37 H 0.050 0.950 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.024 0.976 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.031 12.272 11.346 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.166 6.166 3 C 0.109 3.891 4 N -0.198 5.198 5 N -0.136 5.136 6 C -0.038 4.038 7 C -0.031 4.031 8 C -0.292 4.292 9 C 0.377 3.623 10 O -0.415 6.415 11 N -0.351 5.351 12 C 0.016 3.984 13 H 0.093 0.907 14 C -0.156 4.156 15 C -0.169 4.169 16 C 0.058 3.942 17 H 0.041 0.959 18 C -0.192 4.192 19 N -0.305 5.305 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.191 4.191 23 N -0.541 5.541 24 Si 0.724 3.276 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.036 3.964 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.204 0.796 36 H 0.223 0.777 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.379 11.646 11.237 17.395 hybrid contribution 0.000 0.508 -0.923 1.053 sum -6.379 12.153 10.315 17.170 Atomic orbital electron populations 1.22994 0.78229 1.03593 1.01667 1.86546 1.21346 1.20470 1.88243 1.20417 0.90270 0.85096 0.93309 1.77232 1.13237 0.94633 1.34732 1.47575 1.03208 1.06268 1.56552 1.21945 1.04166 0.73884 1.03841 1.23018 0.90997 0.92289 0.96797 1.19885 0.92010 0.92750 1.24523 1.16938 0.81640 0.87302 0.76370 1.90778 1.82232 1.17981 1.50499 1.45618 1.04811 1.09692 1.75014 1.21711 0.85724 0.90252 1.00731 0.90670 1.21687 0.97432 0.98661 0.97853 1.22059 0.99619 0.97000 0.98175 1.20448 0.90268 0.92947 0.90488 0.95885 1.21788 0.99201 0.97480 1.00752 1.44034 1.28086 1.35807 1.22561 1.18998 1.30484 0.92336 0.96131 0.91680 1.25040 1.01299 0.95254 0.97488 1.69976 1.43826 1.00011 1.40242 0.86444 0.80947 0.77878 0.82324 1.21601 1.21649 1.20781 1.21188 0.99882 0.88511 0.86843 0.88173 0.92738 0.92627 0.90325 0.89010 0.89135 0.79555 0.77699 0.93086 0.91217 0.92834 0.93014 0.94545 0.92121 0.93037 0.93699 0.95841 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.70 101.05 1.08 1.48 16 2 O -0.26 -4.93 9.98 -24.62 -0.25 -5.18 16 3 C 0.31 5.77 7.85 -16.66 -0.13 5.64 16 4 N -0.36 -5.68 11.90 30.79 0.37 -5.32 16 5 N -0.35 -4.46 3.97 -67.59 -0.27 -4.73 16 6 C 0.10 0.71 11.44 59.85 0.68 1.39 16 7 C 0.12 1.60 10.98 -16.57 -0.18 1.42 16 8 C -0.28 -4.99 6.14 -104.95 -0.64 -5.64 16 9 C 0.59 12.34 7.77 -12.60 -0.10 12.24 16 10 O -0.54 -13.43 16.09 -0.09 0.00 -13.43 16 11 N -0.70 -12.91 4.90 -54.83 -0.27 -13.18 16 12 C 0.12 2.37 2.81 -67.82 -0.19 2.18 16 13 H 0.08 1.53 7.58 -51.92 -0.39 1.14 16 14 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 15 C -0.13 -2.00 5.21 -26.61 -0.14 -2.14 16 16 C 0.17 3.21 3.50 -67.60 -0.24 2.97 16 17 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 18 C -0.13 -2.38 7.95 37.16 0.30 -2.09 16 19 N -0.58 -13.82 2.90 -164.72 -0.48 -14.30 16 20 C -0.25 -6.61 8.58 -15.06 -0.13 -6.74 16 21 H 0.07 1.67 6.23 -52.49 -0.33 1.35 16 22 C 0.01 0.24 4.94 -17.43 -0.09 0.15 16 23 N -0.90 -26.90 11.23 55.49 0.62 -26.28 16 24 Si 0.89 22.57 29.58 -169.99 -5.03 17.54 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 C 0.16 3.94 4.88 -3.68 -0.02 3.92 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.19 1.71 7.46 -52.49 -0.39 1.32 16 36 H 0.39 6.10 5.69 -40.82 -0.23 5.86 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 1.19 7.67 -51.93 -0.40 0.79 16 43 H 0.05 0.90 7.40 -51.93 -0.38 0.52 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 45 H 0.02 0.61 8.14 -51.92 -0.42 0.18 16 46 H 0.10 2.78 6.15 -51.93 -0.32 2.46 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -36.52 370.80 -6.64 -43.16 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.99 Total: 3.31 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 0.06 Total: 12.80 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.03 Total: -63.79 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.25 Total: -18.61 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.03 Total: 17.54 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.52 -6.64 -43.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071738446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.498 kcal (2) G-P(sol) polarization free energy of solvation -36.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds