Wall clock time and date at job start Tue Mar 31 2020 14:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35851 * 117.00266 * 2 1 4 4 N 1.30816 * 126.05738 * 0.35538 * 3 2 1 5 5 N 1.39914 * 108.87793 * 180.14172 * 4 3 2 6 6 C 1.46507 * 125.68308 * 179.80753 * 5 4 3 7 7 C 1.34153 * 108.62995 * 359.54624 * 5 4 3 8 8 C 1.38143 * 107.50545 * 0.26564 * 7 5 4 9 9 C 1.47242 * 126.44898 * 179.97438 * 8 7 5 10 10 O 1.21619 * 120.00494 * 180.02562 * 9 8 7 11 11 N 1.34784 * 120.00219 * 0.02562 * 9 8 7 12 12 C 1.46496 * 120.00468 * 180.02562 * 11 9 8 13 13 H 1.09008 * 109.49388 * 324.99644 * 12 11 9 14 14 C 1.53036 * 109.49758 * 204.93789 * 12 11 9 15 15 C 1.53039 * 109.53971 * 301.40774 * 14 12 11 16 16 C 1.53194 * 109.31216 * 298.64221 * 15 14 12 17 17 H 1.09000 * 109.58167 * 294.69591 * 16 15 14 18 18 C 1.53003 * 109.58468 * 174.41834 * 16 15 14 19 19 N 1.46924 * 108.77859 * 54.63063 * 16 15 14 20 20 C 1.36932 * 120.63052 * 126.41190 * 19 16 15 21 21 H 1.07996 * 120.00261 * 330.19754 * 20 19 16 22 22 C 1.38815 * 119.99929 * 150.19390 * 20 19 16 23 23 N 1.31622 * 120.00085 * 344.47795 * 22 20 19 24 24 Si 1.86802 * 120.00227 * 164.47765 * 22 20 19 25 25 H 1.48501 * 109.47007 * 90.00038 * 24 22 20 26 26 H 1.48499 * 109.47254 * 210.00141 * 24 22 20 27 27 H 1.48498 * 109.46882 * 330.00213 * 24 22 20 28 28 C 1.46992 * 118.75296 * 306.39468 * 19 16 15 29 29 H 1.09001 * 109.46761 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46980 * 300.00112 * 1 2 3 31 31 H 1.08998 * 109.46995 * 60.00152 * 1 2 3 32 32 H 1.08991 * 109.47381 * 269.69065 * 6 5 4 33 33 H 1.09010 * 109.46703 * 149.69183 * 6 5 4 34 34 H 1.08996 * 109.47280 * 29.69483 * 6 5 4 35 35 H 1.08002 * 126.25330 * 180.23016 * 7 5 4 36 36 H 0.97005 * 119.99527 * 0.02562 * 11 9 8 37 37 H 1.08994 * 109.46507 * 61.43453 * 14 12 11 38 38 H 1.09004 * 109.46008 * 181.40293 * 14 12 11 39 39 H 1.09002 * 109.49194 * 58.58634 * 15 14 12 40 40 H 1.08998 * 109.50177 * 178.68671 * 15 14 12 41 41 H 1.08999 * 109.47311 * 59.99917 * 18 16 15 42 42 H 1.08997 * 109.47071 * 179.97438 * 18 16 15 43 43 H 1.08991 * 109.47329 * 299.99785 * 18 16 15 44 44 H 0.96993 * 120.00244 * 179.97438 * 23 22 20 45 45 H 1.09007 * 109.57883 * 293.82320 * 28 19 16 46 46 H 1.08999 * 109.62990 * 173.38494 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4531 2.3766 0.0066 5 7 2.4282 3.3800 0.0007 6 6 2.1704 4.8222 0.0012 7 6 3.6386 2.8014 0.0005 8 6 3.4452 1.4335 0.0000 9 6 4.4955 0.4016 -0.0010 10 8 4.1912 -0.7759 -0.0018 11 7 5.7943 0.7619 -0.0010 12 6 6.8393 -0.2648 -0.0025 13 1 6.5091 -1.1208 0.5861 14 6 8.1206 0.3097 0.6061 15 6 8.5666 1.5320 -0.1996 16 6 8.8639 1.1076 -1.6412 17 1 9.7188 0.4315 -1.6541 18 6 9.1755 2.3446 -2.4861 19 7 7.6831 0.4238 -2.1860 20 6 7.1211 0.8347 -3.3652 21 1 7.1836 1.8715 -3.6608 22 6 6.4711 -0.0816 -4.1806 23 7 6.6488 -1.3721 -3.9925 24 14 5.3442 0.5170 -5.5449 25 1 6.1292 0.6956 -6.7927 26 1 4.2704 -0.4828 -5.7744 27 1 4.7371 1.8140 -5.1521 28 6 7.1165 -0.7100 -1.4417 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.1064 5.1802 -1.0263 33 1 2.9827 5.3363 0.5152 34 1 1.2304 5.0231 0.5151 35 1 4.5904 3.3117 0.0000 36 1 6.0371 1.7011 0.0001 37 1 7.9321 0.6042 1.6384 38 1 8.9050 -0.4468 0.5819 39 1 7.7727 2.2790 -0.1966 40 1 9.4661 1.9545 0.2481 41 1 10.0441 2.8574 -2.0729 42 1 9.3872 2.0406 -3.5112 43 1 8.3178 3.0170 -2.4760 44 1 6.1943 -2.0123 -4.5621 45 1 7.8274 -1.5365 -1.4381 46 1 6.1859 -1.0281 -1.9116 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071738446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:35 Heat of formation + Delta-G solvation = 7.314728 kcal Electronic energy + Delta-G solvation = -29023.258079 eV Core-core repulsion = 25143.066338 eV Total energy + Delta-G solvation = -3880.191741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.49379 -40.59953 -39.33749 -38.85920 -35.65541 -34.42904 -33.83198 -32.55287 -31.70073 -30.86451 -28.83011 -27.84874 -27.15924 -26.55019 -24.05470 -23.72493 -22.23142 -21.83778 -21.41081 -20.26770 -19.09643 -18.21429 -17.89964 -17.33291 -17.08224 -16.79606 -16.25765 -16.02163 -15.92068 -15.79236 -15.44671 -15.36605 -14.92024 -14.62887 -14.35656 -14.10393 -13.81980 -13.64224 -13.46765 -13.42037 -12.91448 -12.87252 -12.84985 -12.55934 -12.47881 -12.37514 -12.16126 -12.10666 -12.02969 -11.91851 -11.49906 -11.14454 -10.97637 -10.78176 -10.47021 -10.21291 -9.87052 -9.43531 -8.50949 -7.77631 -5.22341 0.52882 1.14764 1.29623 1.38643 1.43404 1.49016 2.23237 2.51719 2.52331 2.68639 3.39203 3.42816 3.69888 3.79808 4.10002 4.18710 4.23180 4.26209 4.29080 4.33490 4.40359 4.50825 4.53205 4.58093 4.62710 4.72007 4.75290 4.77918 4.83486 4.91044 5.04518 5.13103 5.19061 5.20284 5.35459 5.41150 5.65511 5.69106 5.76967 5.81803 5.84971 5.90417 6.16549 6.49298 6.51435 6.90614 7.23545 7.59179 7.99114 8.50126 9.27604 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010692 B = 0.005203 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.252158 B = 5380.568828 C = 6011.252199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.289 3.711 4 N -0.368 5.368 5 N -0.340 5.340 6 C 0.088 3.912 7 C 0.154 3.846 8 C -0.329 4.329 9 C 0.585 3.415 10 O -0.597 6.597 11 N -0.686 5.686 12 C 0.131 3.869 13 H 0.058 0.942 14 C -0.109 4.109 15 C -0.117 4.117 16 C 0.153 3.847 17 H 0.009 0.991 18 C -0.128 4.128 19 N -0.592 5.592 20 C -0.228 4.228 21 H 0.081 0.919 22 C -0.057 4.057 23 N -0.938 5.938 24 Si 0.945 3.055 25 H -0.282 1.282 26 H -0.313 1.313 27 H -0.266 1.266 28 C 0.173 3.827 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.236 0.764 36 H 0.406 0.594 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.057 0.943 44 H 0.239 0.761 45 H -0.008 1.008 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.996 17.354 13.081 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.206 6.206 3 C 0.084 3.916 4 N -0.209 5.209 5 N -0.121 5.121 6 C -0.050 4.050 7 C -0.001 4.001 8 C -0.344 4.344 9 C 0.374 3.626 10 O -0.478 6.478 11 N -0.337 5.337 12 C 0.024 3.976 13 H 0.076 0.924 14 C -0.147 4.147 15 C -0.156 4.156 16 C 0.047 3.953 17 H 0.027 0.973 18 C -0.185 4.185 19 N -0.316 5.316 20 C -0.359 4.359 21 H 0.099 0.901 22 C -0.252 4.252 23 N -0.586 5.586 24 Si 0.775 3.225 25 H -0.209 1.209 26 H -0.241 1.241 27 H -0.191 1.191 28 C 0.046 3.954 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.243 0.757 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.010 0.990 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.336 16.846 12.992 21.933 hybrid contribution -0.302 -0.953 -1.433 1.748 sum -5.638 15.892 11.558 20.444 Atomic orbital electron populations 1.23219 0.76070 1.05086 1.02313 1.86472 1.23830 1.21818 1.88449 1.20730 0.90848 0.85489 0.94496 1.77186 1.14347 0.94541 1.34790 1.48151 1.02515 1.07693 1.53760 1.22525 1.06526 0.70482 1.05482 1.23562 0.92762 0.90505 0.93260 1.19869 0.91231 0.94314 1.29019 1.17470 0.82741 0.87244 0.75154 1.90735 1.83174 1.20657 1.53271 1.45409 1.03844 1.10224 1.74179 1.21410 0.88174 0.90821 0.97154 0.92434 1.21657 0.94701 0.98855 0.99503 1.21956 1.02031 0.96893 0.94707 1.20796 0.87858 0.93064 0.93537 0.97297 1.21720 1.01148 0.96690 0.98941 1.44252 1.29816 1.35531 1.21997 1.19405 1.28033 0.92591 0.95881 0.90149 1.25739 1.03809 0.95443 1.00208 1.70161 1.45687 1.01106 1.41636 0.85596 0.78980 0.77270 0.80638 1.20850 1.24056 1.19118 1.20825 0.96499 0.88413 0.89700 0.86378 0.91418 0.92490 0.89068 0.84826 0.88222 0.74771 0.75676 0.89441 0.91259 0.91125 0.89002 0.90550 0.94985 0.92436 0.95144 0.98988 0.94042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 10.70 113.37 1.21 1.96 16 2 O -0.30 -11.91 9.98 -86.76 -0.87 -12.78 16 3 C 0.29 10.75 7.85 85.70 0.67 11.43 16 4 N -0.37 -11.24 11.90 -169.99 -2.02 -13.26 16 5 N -0.34 -7.39 3.97 -367.76 -1.46 -8.85 16 6 C 0.09 0.78 11.44 127.77 1.46 2.24 16 7 C 0.15 3.53 10.98 84.32 0.93 4.46 16 8 C -0.33 -11.75 6.14 -20.08 -0.12 -11.87 16 9 C 0.59 25.00 7.77 86.61 0.67 25.67 16 10 O -0.60 -31.90 16.09 1.02 0.02 -31.88 16 11 N -0.69 -24.55 4.90 -445.62 -2.19 -26.73 16 12 C 0.13 5.12 2.81 45.07 0.13 5.25 16 13 H 0.06 2.45 7.58 -2.38 -0.02 2.44 16 14 C -0.11 -3.09 5.59 30.62 0.17 -2.92 16 15 C -0.12 -3.03 5.21 30.67 0.16 -2.87 16 16 C 0.15 5.54 3.50 44.98 0.16 5.69 16 17 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 18 C -0.13 -4.02 7.95 71.98 0.57 -3.45 16 19 N -0.59 -28.08 2.90 -675.07 -1.96 -30.04 16 20 C -0.23 -12.06 8.58 84.04 0.72 -11.34 16 21 H 0.08 3.97 6.23 -2.91 -0.02 3.95 16 22 C -0.06 -3.35 4.94 84.86 0.42 -2.93 16 23 N -0.94 -59.79 11.23 21.65 0.24 -59.55 16 24 Si 0.94 47.60 29.58 68.60 2.03 49.63 16 25 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 26 H -0.31 -16.76 7.11 99.48 0.71 -16.06 16 27 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 28 C 0.17 8.78 4.88 86.35 0.42 9.20 16 29 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.13 0.15 8.14 -2.38 -0.02 0.13 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.24 2.82 7.46 -2.91 -0.02 2.80 16 36 H 0.41 11.27 5.69 -92.70 -0.53 10.74 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.63 6.40 -2.39 -0.02 1.61 16 40 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.03 1.17 7.67 -2.39 -0.02 1.15 16 43 H 0.06 1.74 7.40 -2.39 -0.02 1.72 16 44 H 0.24 15.23 8.31 -92.71 -0.77 14.46 16 45 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 46 H 0.04 2.57 6.15 -2.39 -0.01 2.56 16 Total: -1.00 -89.62 370.80 1.83 -87.79 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.47 Total: 15.15 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 7.57 Total: 30.52 kcal Atomic # 7 Polarization: -131.04 SS G_CDS: -7.39 Total: -138.43 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.85 Total: -44.66 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -89.62 1.83 -87.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071738446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.108 kcal (2) G-P(sol) polarization free energy of solvation -89.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds