Wall clock time and date at job start Tue Mar 31 2020 14:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35347 * 117.00083 * 2 1 4 4 C 1.38996 * 126.40301 * 264.29385 * 3 2 1 5 5 C 1.46926 * 126.50017 * 0.02562 * 4 3 2 6 6 O 1.21665 * 119.99463 * 359.72016 * 5 4 3 7 7 N 1.34778 * 120.00219 * 179.71187 * 5 4 3 8 8 C 1.46499 * 119.99653 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.52667 * 325.07853 * 8 7 5 10 10 C 1.53047 * 109.49390 * 205.00247 * 8 7 5 11 11 C 1.53037 * 109.52277 * 178.69103 * 10 8 7 12 12 C 1.53170 * 109.33051 * 61.37378 * 11 10 8 13 13 H 1.08998 * 109.70318 * 65.20830 * 12 11 10 14 14 C 1.52996 * 109.58895 * 185.56626 * 12 11 10 15 15 N 1.46928 * 108.76533 * 305.35131 * 12 11 10 16 16 C 1.36929 * 120.62861 * 233.58774 * 15 12 11 17 17 H 1.07995 * 120.00457 * 29.35588 * 16 15 12 18 18 C 1.38821 * 119.99565 * 209.36062 * 16 15 12 19 19 N 1.31613 * 120.00325 * 14.52809 * 18 16 15 20 20 Si 1.86803 * 119.99634 * 194.52646 * 18 16 15 21 21 H 1.48503 * 109.47088 * 89.99851 * 20 18 16 22 22 H 1.48503 * 109.46998 * 209.99766 * 20 18 16 23 23 H 1.48495 * 109.47297 * 330.00099 * 20 18 16 24 24 C 1.46929 * 118.73625 * 53.61212 * 15 12 11 25 25 C 1.41465 * 107.00659 * 179.74409 * 4 3 2 26 26 N 1.30315 * 108.13484 * 0.22717 * 25 4 3 27 27 N 1.34658 * 126.41048 * 84.42633 * 3 2 1 28 28 C 1.46501 * 125.73659 * 0.02562 * 27 3 2 29 29 H 1.09001 * 109.47459 * 64.67483 * 1 2 3 30 30 H 1.09000 * 109.46964 * 184.67544 * 1 2 3 31 31 H 1.09004 * 109.47090 * 304.67254 * 1 2 3 32 32 H 0.96998 * 119.99764 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.45769 * 298.70446 * 10 8 7 34 34 H 1.08998 * 109.45869 * 58.67530 * 10 8 7 35 35 H 1.09008 * 109.49368 * 181.30751 * 11 10 8 36 36 H 1.08997 * 109.50289 * 301.40255 * 11 10 8 37 37 H 1.09003 * 109.46834 * 179.27706 * 14 12 11 38 38 H 1.08995 * 109.47482 * 299.27741 * 14 12 11 39 39 H 1.08997 * 109.47407 * 59.28582 * 14 12 11 40 40 H 0.96998 * 120.00084 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58553 * 186.60493 * 24 15 12 42 42 H 1.08997 * 109.59017 * 66.17591 * 24 15 12 43 43 H 1.07997 * 125.93160 * 180.18323 * 25 4 3 44 44 H 1.09001 * 109.47388 * 275.70107 * 28 27 3 45 45 H 1.09003 * 109.47342 * 35.70321 * 28 27 3 46 46 H 1.09006 * 109.46703 * 155.70246 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 6 2.5170 1.8904 -1.1132 5 6 2.4449 1.4424 -2.5106 6 8 1.9346 0.3714 -2.7804 7 7 2.9437 2.2179 -3.4936 8 6 2.8712 1.7713 -4.8870 9 1 2.9917 0.6889 -4.9293 10 6 3.9840 2.4412 -5.6965 11 6 3.9291 1.9502 -7.1450 12 6 2.5819 2.3390 -7.7614 13 1 2.5070 3.4245 -7.8261 14 6 2.4642 1.7325 -9.1611 15 7 1.5043 1.8207 -6.9078 16 6 0.5117 1.0386 -7.4350 17 1 0.7144 0.4137 -8.2921 18 6 -0.7552 1.0489 -6.8676 19 7 -1.0898 2.0001 -6.0217 20 14 -1.9853 -0.2872 -7.3048 21 1 -1.8414 -1.4217 -6.3574 22 1 -3.3629 0.2600 -7.2162 23 1 -1.7293 -0.7623 -8.6883 24 6 1.5117 2.1581 -5.4777 25 6 3.0759 3.1033 -0.6463 26 7 2.9488 3.1358 0.6502 27 7 2.3125 1.9659 1.0786 28 6 1.9884 1.6270 2.4665 29 1 -0.3634 0.4396 -0.9289 30 1 -0.3633 -1.0243 0.0838 31 1 -0.3633 0.5846 0.8452 32 1 3.3507 3.0717 -3.2784 33 1 3.8487 3.5225 -5.6742 34 1 4.9514 2.1873 -5.2633 35 1 4.7362 2.4098 -7.7157 36 1 4.0396 0.8661 -7.1661 37 1 1.4996 1.9997 -9.5929 38 1 3.2643 2.1182 -9.7928 39 1 2.5445 0.6475 -9.0949 40 1 -1.9749 2.0071 -5.6250 41 1 0.7216 1.6066 -4.9681 42 1 1.3509 3.2291 -5.3541 43 1 3.5297 3.8689 -1.2581 44 1 0.9596 1.9167 2.6806 45 1 2.1017 0.5530 2.6143 46 1 2.6629 2.1592 3.1374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:39 Heat of formation + Delta-G solvation = 6.502185 kcal Electronic energy + Delta-G solvation = -28415.969266 eV Core-core repulsion = 24535.742291 eV Total energy + Delta-G solvation = -3880.226976 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.63451 -40.55072 -39.24167 -39.01472 -35.89185 -34.66156 -34.38425 -32.26102 -31.70888 -30.89909 -28.63663 -27.81689 -27.52269 -26.57883 -24.18967 -23.66129 -22.40251 -21.82346 -21.28522 -20.83957 -19.32419 -18.30105 -17.90280 -17.51569 -17.33134 -16.82025 -16.36475 -15.89102 -15.74949 -15.65546 -15.43676 -15.30920 -14.96444 -14.74227 -14.69251 -14.37734 -14.04903 -13.62373 -13.58705 -13.44960 -13.03715 -12.96614 -12.71671 -12.69967 -12.54487 -12.47966 -12.24499 -12.07189 -11.93075 -11.62267 -11.43041 -11.29154 -11.09890 -10.80235 -10.51585 -10.50851 -10.07437 -9.68525 -8.58450 -7.81850 -5.28504 0.10247 1.07324 1.07803 1.41184 1.46139 1.51549 2.31342 2.33190 2.53395 2.63075 3.33238 3.38170 3.73607 3.91261 3.98967 4.04984 4.09774 4.14806 4.26210 4.28883 4.31420 4.36970 4.45000 4.56635 4.60698 4.62705 4.69815 4.75679 4.87327 4.93799 5.02064 5.04301 5.11629 5.23348 5.32842 5.36490 5.41761 5.56714 5.58988 5.66135 5.73411 5.87606 6.22595 6.36338 6.44965 6.76970 7.19206 7.45983 7.93782 8.42765 9.22834 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013780 B = 0.004081 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.409569 B = 6858.724954 C = 8383.809227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.314 6.314 3 C 0.308 3.692 4 C -0.318 4.318 5 C 0.585 3.415 6 O -0.588 6.588 7 N -0.703 5.703 8 C 0.134 3.866 9 H 0.047 0.953 10 C -0.107 4.107 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.023 0.977 14 C -0.130 4.130 15 N -0.604 5.604 16 C -0.250 4.250 17 H 0.074 0.926 18 C -0.053 4.053 19 N -0.934 5.934 20 Si 0.955 3.045 21 H -0.296 1.296 22 H -0.293 1.293 23 H -0.262 1.262 24 C 0.182 3.818 25 C 0.104 3.896 26 N -0.288 5.288 27 N -0.366 5.366 28 C 0.082 3.918 29 H 0.030 0.970 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.411 0.589 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.037 0.963 38 H 0.079 0.921 39 H 0.044 0.956 40 H 0.243 0.757 41 H 0.042 0.958 42 H -0.002 1.002 43 H 0.231 0.769 44 H 0.095 0.905 45 H 0.102 0.898 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.725 3.197 14.316 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.223 6.223 3 C 0.133 3.867 4 C -0.334 4.334 5 C 0.373 3.627 6 O -0.469 6.469 7 N -0.354 5.354 8 C 0.028 3.972 9 H 0.066 0.934 10 C -0.145 4.145 11 C -0.157 4.157 12 C 0.048 3.952 13 H 0.041 0.959 14 C -0.187 4.187 15 N -0.328 5.328 16 C -0.380 4.380 17 H 0.092 0.908 18 C -0.248 4.248 19 N -0.580 5.580 20 Si 0.784 3.216 21 H -0.224 1.224 22 H -0.220 1.220 23 H -0.186 1.186 24 C 0.054 3.946 25 C -0.083 4.083 26 N -0.111 5.111 27 N -0.155 5.155 28 C -0.057 4.057 29 H 0.049 0.951 30 H 0.144 0.856 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.016 0.984 43 H 0.247 0.753 44 H 0.114 0.886 45 H 0.120 0.880 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.448 2.839 15.338 18.774 hybrid contribution -1.557 -0.795 -0.672 1.873 sum 8.891 2.043 14.666 17.272 Atomic orbital electron populations 1.23274 0.75352 1.05828 1.01156 1.85962 1.22694 1.20691 1.92986 1.19507 0.95136 0.84754 0.87292 1.20111 1.20316 1.00563 0.92398 1.17430 0.77140 0.83516 0.84596 1.90803 1.46617 1.24824 1.84606 1.45572 1.61017 1.23009 1.05792 1.21487 0.97675 0.98216 0.79823 0.93435 1.21652 0.97081 1.00547 0.95232 1.21949 0.97646 1.00803 0.95338 1.20804 0.88146 0.95212 0.91010 0.95897 1.21738 1.01019 1.00280 0.95679 1.44340 1.26576 1.58662 1.03268 1.19497 0.88750 1.16398 1.13358 0.90835 1.25780 0.98720 0.99490 1.00809 1.70161 1.19661 1.33302 1.34895 0.85436 0.78532 0.79250 0.78376 1.22407 1.22003 1.18614 1.20762 0.93979 0.95444 0.84378 1.24386 0.96265 0.95730 0.91907 1.77152 1.18870 1.01489 1.13600 1.49238 1.44748 1.13548 1.07950 1.22401 1.03976 1.03801 0.75496 0.95135 0.85591 0.90530 0.75172 0.90546 0.89633 0.88544 0.93108 0.94357 0.90250 0.93665 0.94750 0.93982 0.98375 0.75327 0.88617 0.87962 0.86606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 11.13 113.37 1.26 2.22 16 2 O -0.31 -9.76 9.83 -79.43 -0.78 -10.54 16 3 C 0.31 9.27 6.99 84.44 0.59 9.86 16 4 C -0.32 -10.16 6.15 -20.03 -0.12 -10.28 16 5 C 0.58 23.15 7.76 86.52 0.67 23.82 16 6 O -0.59 -29.54 16.04 2.70 0.04 -29.50 16 7 N -0.70 -24.00 5.07 -445.89 -2.26 -26.26 16 8 C 0.13 5.40 2.60 45.07 0.12 5.52 16 9 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 10 C -0.11 -3.21 5.36 30.62 0.16 -3.05 16 11 C -0.12 -3.72 5.37 30.66 0.16 -3.56 16 12 C 0.15 6.16 3.50 44.97 0.16 6.32 16 13 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 14 C -0.13 -4.73 7.95 71.98 0.57 -4.16 16 15 N -0.60 -31.12 2.99 -675.27 -2.02 -33.14 16 16 C -0.25 -14.20 8.59 84.04 0.72 -13.48 16 17 H 0.07 4.04 6.22 -2.91 -0.02 4.02 16 18 C -0.05 -3.14 4.97 84.87 0.42 -2.72 16 19 N -0.93 -58.54 11.13 21.65 0.24 -58.30 16 20 Si 0.95 48.00 29.58 68.60 2.03 50.03 16 21 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 22 H -0.29 -14.65 7.11 99.48 0.71 -13.95 16 23 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 24 C 0.18 9.28 4.86 86.36 0.42 9.70 16 25 C 0.10 2.45 11.50 85.71 0.99 3.43 16 26 N -0.29 -6.93 12.47 -56.23 -0.70 -7.63 16 27 N -0.37 -8.51 3.99 -479.79 -1.91 -10.43 16 28 C 0.08 1.04 11.38 127.77 1.45 2.49 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 1.37 8.14 -2.38 -0.02 1.36 16 32 H 0.41 10.18 7.55 -92.71 -0.70 9.48 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.54 7.62 -2.39 -0.02 1.52 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.04 1.70 7.44 -2.39 -0.02 1.68 16 40 H 0.24 14.96 8.31 -92.71 -0.77 14.19 16 41 H 0.04 2.60 6.07 -2.39 -0.01 2.58 16 42 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.23 3.32 7.50 -2.91 -0.02 3.30 16 44 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -84.29 374.65 2.50 -81.78 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.29 Total: 17.86 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 7.58 Total: 26.12 kcal Atomic # 7 Polarization: -129.10 SS G_CDS: -6.66 Total: -135.76 kcal Atomic # 8 Polarization: -39.30 SS G_CDS: -0.74 Total: -40.04 kcal Atomic # 14 Polarization: 48.00 SS G_CDS: 2.03 Total: 50.03 kcal Total: -84.29 2.50 -81.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.284 kcal (2) G-P(sol) polarization free energy of solvation -84.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds