Wall clock time and date at job start Tue Mar 31 2020 14:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35352 * 116.99675 * 2 1 4 4 C 1.39001 * 126.40642 * 263.45398 * 3 2 1 5 5 C 1.46921 * 126.49467 * 0.02562 * 4 3 2 6 6 O 1.21670 * 120.00063 * 359.71389 * 5 4 3 7 7 N 1.34779 * 120.00236 * 179.71788 * 5 4 3 8 8 C 1.46496 * 119.99983 * 180.27749 * 7 5 4 9 9 H 1.08994 * 109.50164 * 34.78322 * 8 7 5 10 10 C 1.53043 * 109.49625 * 154.88547 * 8 7 5 11 11 C 1.53035 * 109.54183 * 58.58171 * 10 8 7 12 12 C 1.53196 * 109.31438 * 61.36542 * 11 10 8 13 13 H 1.08996 * 109.58374 * 65.14984 * 12 11 10 14 14 C 1.53003 * 109.58979 * 185.58085 * 12 11 10 15 15 N 1.46929 * 108.77352 * 305.36873 * 12 11 10 16 16 C 1.36941 * 120.62719 * 233.62786 * 15 12 11 17 17 H 1.07998 * 120.00177 * 39.73625 * 16 15 12 18 18 C 1.38820 * 119.99588 * 219.73317 * 16 15 12 19 19 N 1.31613 * 119.99554 * 214.31040 * 18 16 15 20 20 Si 1.86791 * 120.00024 * 34.30901 * 18 16 15 21 21 H 1.48506 * 109.47110 * 84.66791 * 20 18 16 22 22 H 1.48502 * 109.46952 * 204.66612 * 20 18 16 23 23 H 1.48497 * 109.47508 * 324.66753 * 20 18 16 24 24 C 1.46924 * 118.73852 * 53.60484 * 15 12 11 25 25 C 1.41460 * 107.00816 * 179.74898 * 4 3 2 26 26 N 1.30314 * 108.13464 * 0.22149 * 25 4 3 27 27 N 1.34655 * 126.40782 * 83.58379 * 3 2 1 28 28 C 1.46496 * 125.74255 * 0.02868 * 27 3 2 29 29 H 1.09005 * 109.46362 * 184.77990 * 1 2 3 30 30 H 1.08995 * 109.47062 * 304.77728 * 1 2 3 31 31 H 1.09005 * 109.47196 * 64.78297 * 1 2 3 32 32 H 0.97004 * 119.99556 * 359.97438 * 7 5 4 33 33 H 1.09003 * 109.45922 * 178.60187 * 10 8 7 34 34 H 1.09003 * 109.45846 * 298.56024 * 10 8 7 35 35 H 1.09008 * 109.49878 * 301.41795 * 11 10 8 36 36 H 1.09000 * 109.52797 * 181.33127 * 11 10 8 37 37 H 1.09000 * 109.47092 * 179.29014 * 14 12 11 38 38 H 1.08998 * 109.46389 * 299.28851 * 14 12 11 39 39 H 1.08993 * 109.46957 * 59.28792 * 14 12 11 40 40 H 0.97002 * 119.99771 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.58650 * 186.60358 * 24 15 12 42 42 H 1.09000 * 109.70486 * 66.25257 * 24 15 12 43 43 H 1.07996 * 125.92990 * 180.19050 * 25 4 3 44 44 H 1.09002 * 109.46872 * 265.63073 * 28 27 3 45 45 H 1.09005 * 109.47342 * 25.62475 * 28 27 3 46 46 H 1.08999 * 109.47420 * 145.63176 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.5316 1.8832 -1.1114 5 6 2.4777 1.4259 -2.5066 6 8 1.9711 0.3529 -2.7760 7 7 2.9894 2.1948 -3.4881 8 6 2.9302 1.7415 -4.8799 9 1 2.0064 1.1863 -5.0428 10 6 2.9701 2.9532 -5.8139 11 6 4.2514 3.7514 -5.5623 12 6 5.4661 2.8682 -5.8641 13 1 5.4850 2.6234 -6.9261 14 6 6.7481 3.6113 -5.4830 15 7 5.3601 1.6328 -5.0758 16 6 6.3881 1.2325 -4.2645 17 1 6.9364 1.9625 -3.6875 18 6 6.7254 -0.1117 -4.1837 19 7 7.1564 -0.6147 -3.0464 20 14 6.5675 -1.2063 -5.6889 21 1 7.7938 -1.0877 -6.5181 22 1 6.3953 -2.6173 -5.2590 23 1 5.3881 -0.7844 -6.4865 24 6 4.1299 0.8355 -5.1741 25 6 3.0843 3.0991 -0.6453 26 7 2.9402 3.1403 0.6492 27 7 2.2983 1.9731 1.0769 28 6 1.9562 1.6435 2.4627 29 1 -0.3632 -1.0242 0.0856 30 1 -0.3633 0.5861 0.8441 31 1 -0.3634 0.4379 -0.9298 32 1 3.3930 3.0504 -3.2734 33 1 2.9511 2.6141 -6.8497 34 1 2.1041 3.5872 -5.6236 35 1 4.2830 4.0698 -4.5202 36 1 4.2683 4.6272 -6.2110 37 1 7.6104 2.9764 -5.6868 38 1 6.8248 4.5272 -6.0689 39 1 6.7223 3.8597 -4.4221 40 1 7.3924 -1.5538 -2.9900 41 1 4.1616 0.0237 -4.4473 42 1 4.0386 0.4229 -6.1788 43 1 3.5459 3.8607 -1.2562 44 1 0.9952 2.0913 2.7160 45 1 1.8931 0.5610 2.5738 46 1 2.7255 2.0330 3.1295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019884.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:42 Heat of formation + Delta-G solvation = 12.439550 kcal Electronic energy + Delta-G solvation = -29091.638451 eV Core-core repulsion = 25211.668939 eV Total energy + Delta-G solvation = -3879.969512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.59130 -40.69742 -39.20685 -38.95272 -35.69190 -34.52159 -34.29371 -32.45968 -32.21643 -30.84543 -28.54636 -27.83670 -27.60663 -26.48833 -24.26172 -23.82349 -22.34957 -21.84099 -21.41495 -20.40233 -19.42152 -18.30780 -17.94749 -17.49735 -17.07895 -16.84001 -16.39301 -16.01828 -15.82668 -15.63444 -15.48080 -15.26849 -14.88761 -14.71198 -14.67844 -14.31146 -14.27073 -13.77472 -13.60219 -13.53823 -13.37682 -12.91503 -12.89648 -12.67063 -12.53828 -12.41493 -12.40808 -12.09915 -11.74367 -11.54205 -11.35240 -11.26005 -11.08318 -10.78950 -10.47010 -10.46710 -9.96801 -9.58754 -8.52217 -8.19528 -5.41039 0.19620 1.08837 1.12714 1.35543 1.41175 1.48050 2.29118 2.51315 2.55588 2.66802 3.00969 3.41109 3.49979 3.96379 4.02536 4.06638 4.13184 4.17087 4.22267 4.30983 4.34251 4.37966 4.45579 4.57186 4.61221 4.64834 4.68426 4.75805 4.80927 4.90151 5.07308 5.07592 5.10697 5.16369 5.19090 5.31493 5.36231 5.38051 5.62011 5.71392 5.78452 6.00231 6.28891 6.32986 6.39834 6.81228 7.09570 7.49381 7.76256 8.25077 9.00233 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.004702 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.677195 B = 5953.840038 C = 6450.497979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.318 6.318 3 C 0.311 3.689 4 C -0.319 4.319 5 C 0.590 3.410 6 O -0.592 6.592 7 N -0.689 5.689 8 C 0.134 3.866 9 H 0.074 0.926 10 C -0.109 4.109 11 C -0.121 4.121 12 C 0.152 3.848 13 H 0.033 0.967 14 C -0.128 4.128 15 N -0.598 5.598 16 C -0.234 4.234 17 H 0.053 0.947 18 C -0.009 4.009 19 N -0.931 5.931 20 Si 0.890 3.110 21 H -0.291 1.291 22 H -0.315 1.315 23 H -0.243 1.243 24 C 0.135 3.865 25 C 0.101 3.899 26 N -0.292 5.292 27 N -0.368 5.368 28 C 0.083 3.917 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.405 0.595 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.032 0.968 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.255 0.745 41 H 0.022 0.978 42 H 0.031 0.969 43 H 0.219 0.781 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.600 11.600 4.715 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.228 6.228 3 C 0.137 3.863 4 C -0.335 4.335 5 C 0.378 3.622 6 O -0.474 6.474 7 N -0.339 5.339 8 C 0.027 3.973 9 H 0.092 0.908 10 C -0.147 4.147 11 C -0.160 4.160 12 C 0.048 3.952 13 H 0.050 0.950 14 C -0.185 4.185 15 N -0.323 5.323 16 C -0.364 4.364 17 H 0.070 0.930 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.718 3.282 21 H -0.218 1.218 22 H -0.243 1.243 23 H -0.167 1.167 24 C 0.008 3.992 25 C -0.086 4.086 26 N -0.115 5.115 27 N -0.158 5.158 28 C -0.056 4.056 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.242 0.758 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.041 0.959 42 H 0.049 0.951 43 H 0.235 0.765 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.678 11.129 5.766 20.073 hybrid contribution 0.594 -1.670 -0.989 2.030 sum -15.085 9.459 4.777 18.435 Atomic orbital electron populations 1.23348 0.74910 1.05840 1.01756 1.86024 1.23325 1.20427 1.92988 1.19447 0.95332 0.84447 0.87116 1.20175 1.19704 1.00250 0.93326 1.17252 0.77181 0.83311 0.84408 1.90713 1.48898 1.23405 1.84374 1.45467 1.59593 1.22685 1.06137 1.21398 0.97555 0.97182 0.81146 0.90755 1.21677 0.99061 0.95136 0.98781 1.21967 0.93682 0.98249 1.02119 1.20906 0.94987 0.86012 0.93284 0.94970 1.21701 0.96783 0.99124 1.00906 1.44421 1.12289 1.25113 1.50504 1.18455 1.10453 0.91169 1.16324 0.92977 1.26039 0.98360 0.98661 0.97586 1.70180 1.48973 1.13331 1.24969 0.86607 0.79155 0.77748 0.84672 1.21799 1.24314 1.16733 1.21592 0.86860 0.93390 0.97353 1.24233 0.96092 0.96235 0.92026 1.77115 1.18674 1.02235 1.13432 1.49220 1.44705 1.13723 1.08137 1.22381 1.04075 1.03582 0.75587 0.85774 0.90733 0.93581 0.75769 0.89953 0.89282 0.92036 0.88724 0.94859 0.90365 0.93737 0.93653 0.95930 0.95130 0.76478 0.87653 0.88084 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 11.13 113.37 1.26 2.02 16 2 O -0.32 -10.37 9.74 -79.49 -0.77 -11.15 16 3 C 0.31 10.37 6.98 84.44 0.59 10.96 16 4 C -0.32 -11.45 6.15 -20.03 -0.12 -11.57 16 5 C 0.59 23.96 7.77 86.52 0.67 24.63 16 6 O -0.59 -28.27 16.04 2.68 0.04 -28.23 16 7 N -0.69 -24.04 4.91 -445.91 -2.19 -26.23 16 8 C 0.13 4.64 2.81 45.07 0.13 4.77 16 9 H 0.07 2.66 7.57 -2.39 -0.02 2.64 16 10 C -0.11 -2.69 5.58 30.62 0.17 -2.52 16 11 C -0.12 -3.04 5.21 30.67 0.16 -2.88 16 12 C 0.15 5.25 3.50 44.98 0.16 5.40 16 13 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 14 C -0.13 -4.25 8.05 71.98 0.58 -3.67 16 15 N -0.60 -26.86 2.41 -675.20 -1.63 -28.49 16 16 C -0.23 -12.89 8.48 84.03 0.71 -12.18 16 17 H 0.05 3.09 6.78 -2.91 -0.02 3.07 16 18 C -0.01 -0.53 4.82 84.86 0.41 -0.12 16 19 N -0.93 -60.51 13.97 21.65 0.30 -60.20 16 20 Si 0.89 47.37 27.28 68.60 1.87 49.24 16 21 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 22 H -0.31 -17.51 7.11 99.48 0.71 -16.80 16 23 H -0.24 -12.07 5.10 99.48 0.51 -11.56 16 24 C 0.13 6.00 4.14 86.36 0.36 6.35 16 25 C 0.10 2.98 11.50 85.71 0.99 3.96 16 26 N -0.29 -8.55 12.47 -56.23 -0.70 -9.25 16 27 N -0.37 -10.08 3.99 -479.80 -1.91 -11.99 16 28 C 0.08 1.33 11.41 127.77 1.46 2.78 16 29 H 0.12 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.41 12.12 5.72 -92.70 -0.53 11.59 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.54 6.40 -2.38 -0.02 1.52 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.28 7.68 -2.39 -0.02 1.26 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.56 7.42 -2.39 -0.02 1.54 16 40 H 0.25 16.09 8.31 -92.71 -0.77 15.32 16 41 H 0.02 1.22 6.87 -2.39 -0.02 1.20 16 42 H 0.03 1.36 6.64 -2.39 -0.02 1.34 16 43 H 0.22 4.86 7.50 -2.91 -0.02 4.84 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 1.44 8.03 -2.38 -0.02 1.42 16 46 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -83.18 368.00 2.79 -80.39 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.26 Total: 17.97 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 7.52 Total: 27.95 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -6.13 Total: -136.17 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.73 Total: -39.38 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.87 Total: 49.24 kcal Total: -83.18 2.79 -80.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019884.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.830 kcal (2) G-P(sol) polarization free energy of solvation -83.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds