Wall clock time and date at job start Tue Mar 31 2020 14:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35354 * 116.99503 * 2 1 4 4 C 1.39000 * 126.40169 * 88.51239 * 3 2 1 5 5 C 1.46916 * 126.49898 * 359.96451 * 4 3 2 6 6 O 1.21662 * 119.99993 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99873 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99705 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.52284 * 34.92882 * 8 7 5 10 10 C 1.53043 * 109.49713 * 155.00371 * 8 7 5 11 11 C 1.53031 * 109.53999 * 181.31796 * 10 8 7 12 12 C 1.53193 * 109.31385 * 298.63356 * 11 10 8 13 13 H 1.08998 * 109.58471 * 294.84831 * 12 11 10 14 14 C 1.53004 * 109.58601 * 174.56486 * 12 11 10 15 15 N 1.46922 * 108.89047 * 54.70539 * 12 11 10 16 16 C 1.36943 * 120.62957 * 126.32320 * 15 12 11 17 17 H 1.07996 * 119.99891 * 328.75950 * 16 15 12 18 18 C 1.38818 * 119.99876 * 148.75783 * 16 15 12 19 19 N 1.31613 * 120.00068 * 347.74247 * 18 16 15 20 20 Si 1.86796 * 119.99944 * 167.74435 * 18 16 15 21 21 H 1.48504 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47505 * 120.00034 * 20 18 16 23 23 H 1.48502 * 109.47055 * 240.00326 * 20 18 16 24 24 C 1.47199 * 118.55883 * 306.46232 * 15 12 11 25 25 C 1.41468 * 107.00228 * 180.23581 * 4 3 2 26 26 N 1.30315 * 108.13629 * 359.54803 * 25 4 3 27 27 N 1.34654 * 126.40573 * 268.47371 * 3 2 1 28 28 C 1.46496 * 125.74668 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47403 * 184.93942 * 1 2 3 30 30 H 1.08999 * 109.47257 * 304.93755 * 1 2 3 31 31 H 1.08997 * 109.47607 * 64.93390 * 1 2 3 32 32 H 0.96996 * 120.00360 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.45673 * 61.29199 * 10 8 7 34 34 H 1.09004 * 109.46065 * 301.34036 * 10 8 7 35 35 H 1.09003 * 109.50052 * 178.68175 * 11 10 8 36 36 H 1.09002 * 109.49841 * 58.59011 * 11 10 8 37 37 H 1.08998 * 109.47086 * 60.28616 * 14 12 11 38 38 H 1.09004 * 109.46742 * 180.28603 * 14 12 11 39 39 H 1.09004 * 109.46910 * 300.28405 * 14 12 11 40 40 H 0.96998 * 120.00596 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.55862 * 293.70412 * 24 15 12 42 42 H 1.09004 * 109.65421 * 173.39802 * 24 15 12 43 43 H 1.08001 * 125.92673 * 179.73627 * 25 4 3 44 44 H 1.09004 * 109.47241 * 84.87461 * 28 27 3 45 45 H 1.08996 * 109.47443 * 204.88277 * 28 27 3 46 46 H 1.09010 * 109.46979 * 324.88008 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 6 2.3919 1.9543 1.1184 5 6 2.1627 1.5862 2.5221 6 8 1.6179 0.5328 2.7937 7 7 2.5559 2.4156 3.5091 8 6 2.3279 2.0483 4.9088 9 1 2.4357 0.9698 5.0247 10 6 3.3494 2.7620 5.7972 11 6 3.1330 2.3536 7.2560 12 6 1.7287 2.7772 7.6978 13 1 1.6561 3.8647 7.6911 14 6 1.4552 2.2536 9.1092 15 7 0.7455 2.2121 6.7636 16 6 -0.3030 1.4611 7.2241 17 1 -0.1876 0.8615 8.1149 18 6 -1.5142 1.4706 6.5459 19 7 -1.7389 2.3713 5.6129 20 14 -2.8250 0.2051 6.9575 21 1 -2.3289 -0.6894 8.0341 22 1 -4.0554 0.8982 7.4169 23 1 -3.1327 -0.6001 5.7483 24 6 0.9144 2.4684 5.3240 25 6 3.0035 3.1402 0.6485 26 7 3.0266 3.0963 -0.6537 27 7 2.4318 1.9051 -1.0834 28 6 2.2616 1.4879 -2.4773 29 1 -0.3634 -1.0238 0.0885 30 1 -0.3634 0.5885 0.8424 31 1 -0.3634 0.4354 -0.9308 32 1 2.9899 3.2556 3.2926 33 1 3.2248 3.8405 5.6996 34 1 4.3569 2.4838 5.4878 35 1 3.8758 2.8441 7.8852 36 1 3.2333 1.2722 7.3498 37 1 2.1887 2.6700 9.7996 38 1 0.4537 2.5517 9.4196 39 1 1.5284 1.1660 9.1137 40 1 -2.5854 2.3783 5.1393 41 1 0.7754 3.5308 5.1237 42 1 0.1813 1.8913 4.7604 43 1 3.3876 3.9414 1.2626 44 1 1.2672 1.7710 -2.8225 45 1 3.0139 1.9757 -3.0971 46 1 2.3770 0.4063 -2.5496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072019885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:46 Heat of formation + Delta-G solvation = 32.303654 kcal Electronic energy + Delta-G solvation = -28422.204795 eV Core-core repulsion = 24543.096655 eV Total energy + Delta-G solvation = -3879.108140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.56406 -39.00591 -38.13593 -37.35122 -34.22660 -33.51210 -32.71407 -30.76421 -29.89782 -29.63427 -27.56876 -26.83707 -25.82127 -24.85827 -22.71548 -22.11383 -21.24932 -20.43020 -19.80061 -19.23869 -18.17727 -16.66969 -16.47002 -16.33177 -15.83965 -15.27211 -14.89972 -14.75698 -14.56068 -14.10789 -13.83929 -13.71393 -13.67861 -13.34566 -13.28657 -12.92520 -12.83326 -12.58646 -12.29668 -11.96156 -11.77537 -11.37969 -11.34101 -11.05239 -10.82761 -10.69579 -10.42674 -10.34141 -10.28732 -10.18888 -9.89623 -9.66457 -9.55963 -9.37098 -9.25073 -8.68796 -8.39670 -8.30477 -6.51400 -5.68486 -3.15393 1.22495 2.01414 2.15687 3.43648 3.46192 3.51331 3.52843 3.71412 3.89467 4.31834 4.57812 4.83312 4.84963 5.00593 5.11706 5.13058 5.24809 5.32881 5.42970 5.44688 5.52400 5.62639 5.65889 5.71265 5.81855 6.01322 6.05419 6.19356 6.28286 6.34144 6.40484 6.46264 6.52880 6.60169 6.70341 6.84497 7.09477 7.11712 7.19631 7.27388 7.39333 7.42918 7.83930 7.91538 8.12145 8.57395 8.86175 9.30736 9.94272 10.51316 11.39464 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.004069 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.499060 B = 6880.396313 C = 8391.732804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.299 6.299 3 C 0.317 3.683 4 C -0.289 4.289 5 C 0.589 3.411 6 O -0.532 6.532 7 N -0.717 5.717 8 C 0.120 3.880 9 H 0.081 0.919 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.165 3.835 13 H 0.024 0.976 14 C -0.136 4.136 15 N -0.584 5.584 16 C -0.249 4.249 17 H 0.069 0.931 18 C 0.007 3.993 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.289 1.289 24 C 0.169 3.831 25 C 0.090 3.910 26 N -0.283 5.283 27 N -0.373 5.373 28 C 0.095 3.905 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.390 0.610 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.251 0.749 41 H 0.016 0.984 42 H 0.093 0.907 43 H 0.194 0.806 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 1.337 -12.555 16.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.208 6.208 3 C 0.144 3.856 4 C -0.304 4.304 5 C 0.375 3.625 6 O -0.409 6.409 7 N -0.367 5.367 8 C 0.015 3.985 9 H 0.100 0.900 10 C -0.154 4.154 11 C -0.166 4.166 12 C 0.058 3.942 13 H 0.042 0.958 14 C -0.194 4.194 15 N -0.308 5.308 16 C -0.379 4.379 17 H 0.087 0.913 18 C -0.192 4.192 19 N -0.545 5.545 20 Si 0.730 3.270 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.043 3.957 25 C -0.096 4.096 26 N -0.106 5.106 27 N -0.162 5.162 28 C -0.046 4.046 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.222 0.778 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.111 0.889 43 H 0.211 0.789 44 H 0.095 0.905 45 H 0.114 0.886 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 9.637 0.872 -13.591 16.684 hybrid contribution -0.927 -0.427 0.509 1.141 sum 8.710 0.445 -13.082 15.723 Atomic orbital electron populations 1.23140 0.76274 1.04775 1.01157 1.85957 1.21648 1.20292 1.92873 1.19313 0.94856 0.85120 0.86285 1.20268 1.17759 0.98506 0.93916 1.16907 0.78522 0.83895 0.83160 1.90836 1.42342 1.23888 1.83797 1.45802 1.61890 1.22380 1.06617 1.21936 0.98763 1.00258 0.77586 0.90045 1.21680 0.97653 1.00007 0.96110 1.22044 0.98823 1.01202 0.94528 1.20486 0.88347 0.95116 0.90202 0.95801 1.21802 1.00935 1.00941 0.95696 1.44076 1.27084 1.59579 1.00048 1.19166 0.88788 1.18873 1.11062 0.91343 1.25124 0.96937 0.97664 0.99455 1.69991 1.23791 1.33918 1.26844 0.86265 0.81756 0.81242 0.77779 1.20207 1.21832 1.21622 1.21112 0.91425 0.97989 0.85207 1.23909 0.96883 0.97025 0.91822 1.77171 1.20441 0.99586 1.13435 1.48892 1.46256 1.14620 1.06455 1.21947 1.03556 1.01617 0.77434 0.87601 0.91466 0.93783 0.77757 0.92300 0.93070 0.92758 0.92114 0.94410 0.92040 0.92840 0.93903 0.96549 0.88902 0.78883 0.90508 0.88592 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 11.13 101.05 1.12 1.65 16 2 O -0.30 -4.54 9.83 -25.01 -0.25 -4.79 16 3 C 0.32 4.79 6.99 -16.03 -0.11 4.68 16 4 C -0.29 -4.57 6.15 -104.87 -0.64 -5.22 16 5 C 0.59 11.14 7.76 -12.75 -0.10 11.04 16 6 O -0.53 -12.33 16.04 -2.03 -0.03 -12.37 16 7 N -0.72 -12.14 5.07 -54.92 -0.28 -12.42 16 8 C 0.12 2.37 2.61 -67.81 -0.18 2.19 16 9 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 10 C -0.12 -1.90 5.35 -26.69 -0.14 -2.04 16 11 C -0.13 -2.17 5.37 -26.62 -0.14 -2.32 16 12 C 0.17 3.41 3.49 -67.60 -0.24 3.18 16 13 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 14 C -0.14 -2.59 7.96 37.16 0.30 -2.29 16 15 N -0.58 -14.67 2.99 -164.55 -0.49 -15.16 16 16 C -0.25 -6.87 8.55 -15.05 -0.13 -7.00 16 17 H 0.07 1.85 6.27 -52.49 -0.33 1.52 16 18 C 0.01 0.20 5.02 -17.43 -0.09 0.11 16 19 N -0.90 -26.74 11.16 55.49 0.62 -26.12 16 20 Si 0.90 22.40 29.57 -169.99 -5.03 17.37 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 C 0.17 4.13 4.85 -3.56 -0.02 4.12 16 25 C 0.09 1.15 11.50 -16.97 -0.20 0.95 16 26 N -0.28 -3.71 12.47 30.88 0.39 -3.33 16 27 N -0.37 -4.67 3.99 -67.67 -0.27 -4.94 16 28 C 0.10 0.73 11.38 59.84 0.68 1.41 16 29 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.39 5.12 7.55 -40.82 -0.31 4.81 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 39 H 0.05 1.03 7.41 -51.93 -0.38 0.65 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 2.68 6.18 -51.93 -0.32 2.36 16 43 H 0.19 1.70 7.50 -52.49 -0.39 1.31 16 44 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 374.85 15.07 5.65 5.65 Total: -1.00 -35.31 374.85 -6.73 -42.04 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -7.16 Total: 3.59 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 0.12 Total: 10.46 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: -0.04 Total: -61.96 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.28 Total: -17.15 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.31 -6.73 -42.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.345 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds