Wall clock time and date at job start Tue Mar 31 2020 14:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35354 * 116.99503 * 2 1 4 4 C 1.39000 * 126.40169 * 88.51239 * 3 2 1 5 5 C 1.46916 * 126.49898 * 359.96451 * 4 3 2 6 6 O 1.21662 * 119.99993 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99873 * 180.02562 * 5 4 3 8 8 C 1.46503 * 119.99705 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.52284 * 34.92882 * 8 7 5 10 10 C 1.53043 * 109.49713 * 155.00371 * 8 7 5 11 11 C 1.53031 * 109.53999 * 181.31796 * 10 8 7 12 12 C 1.53193 * 109.31385 * 298.63356 * 11 10 8 13 13 H 1.08998 * 109.58471 * 294.84831 * 12 11 10 14 14 C 1.53004 * 109.58601 * 174.56486 * 12 11 10 15 15 N 1.46922 * 108.89047 * 54.70539 * 12 11 10 16 16 C 1.36943 * 120.62957 * 126.32320 * 15 12 11 17 17 H 1.07996 * 119.99891 * 328.75950 * 16 15 12 18 18 C 1.38818 * 119.99876 * 148.75783 * 16 15 12 19 19 N 1.31613 * 120.00068 * 347.74247 * 18 16 15 20 20 Si 1.86796 * 119.99944 * 167.74435 * 18 16 15 21 21 H 1.48504 * 109.47151 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47505 * 120.00034 * 20 18 16 23 23 H 1.48502 * 109.47055 * 240.00326 * 20 18 16 24 24 C 1.47199 * 118.55883 * 306.46232 * 15 12 11 25 25 C 1.41468 * 107.00228 * 180.23581 * 4 3 2 26 26 N 1.30315 * 108.13629 * 359.54803 * 25 4 3 27 27 N 1.34654 * 126.40573 * 268.47371 * 3 2 1 28 28 C 1.46496 * 125.74668 * 359.97438 * 27 3 2 29 29 H 1.08998 * 109.47403 * 184.93942 * 1 2 3 30 30 H 1.08999 * 109.47257 * 304.93755 * 1 2 3 31 31 H 1.08997 * 109.47607 * 64.93390 * 1 2 3 32 32 H 0.96996 * 120.00360 * 0.02562 * 7 5 4 33 33 H 1.08999 * 109.45673 * 61.29199 * 10 8 7 34 34 H 1.09004 * 109.46065 * 301.34036 * 10 8 7 35 35 H 1.09003 * 109.50052 * 178.68175 * 11 10 8 36 36 H 1.09002 * 109.49841 * 58.59011 * 11 10 8 37 37 H 1.08998 * 109.47086 * 60.28616 * 14 12 11 38 38 H 1.09004 * 109.46742 * 180.28603 * 14 12 11 39 39 H 1.09004 * 109.46910 * 300.28405 * 14 12 11 40 40 H 0.96998 * 120.00596 * 180.02562 * 19 18 16 41 41 H 1.09002 * 109.55862 * 293.70412 * 24 15 12 42 42 H 1.09004 * 109.65421 * 173.39802 * 24 15 12 43 43 H 1.08001 * 125.92673 * 179.73627 * 25 4 3 44 44 H 1.09004 * 109.47241 * 84.87461 * 28 27 3 45 45 H 1.08996 * 109.47443 * 204.88277 * 28 27 3 46 46 H 1.09010 * 109.46979 * 324.88008 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2061 0.0000 4 6 2.3919 1.9543 1.1184 5 6 2.1627 1.5862 2.5221 6 8 1.6179 0.5328 2.7937 7 7 2.5559 2.4156 3.5091 8 6 2.3279 2.0483 4.9088 9 1 2.4357 0.9698 5.0247 10 6 3.3494 2.7620 5.7972 11 6 3.1330 2.3536 7.2560 12 6 1.7287 2.7772 7.6978 13 1 1.6561 3.8647 7.6911 14 6 1.4552 2.2536 9.1092 15 7 0.7455 2.2121 6.7636 16 6 -0.3030 1.4611 7.2241 17 1 -0.1876 0.8615 8.1149 18 6 -1.5142 1.4706 6.5459 19 7 -1.7389 2.3713 5.6129 20 14 -2.8250 0.2051 6.9575 21 1 -2.3289 -0.6894 8.0341 22 1 -4.0554 0.8982 7.4169 23 1 -3.1327 -0.6001 5.7483 24 6 0.9144 2.4684 5.3240 25 6 3.0035 3.1402 0.6485 26 7 3.0266 3.0963 -0.6537 27 7 2.4318 1.9051 -1.0834 28 6 2.2616 1.4879 -2.4773 29 1 -0.3634 -1.0238 0.0885 30 1 -0.3634 0.5885 0.8424 31 1 -0.3634 0.4354 -0.9308 32 1 2.9899 3.2556 3.2926 33 1 3.2248 3.8405 5.6996 34 1 4.3569 2.4838 5.4878 35 1 3.8758 2.8441 7.8852 36 1 3.2333 1.2722 7.3498 37 1 2.1887 2.6700 9.7996 38 1 0.4537 2.5517 9.4196 39 1 1.5284 1.1660 9.1137 40 1 -2.5854 2.3783 5.1393 41 1 0.7754 3.5308 5.1237 42 1 0.1813 1.8913 4.7604 43 1 3.3876 3.9414 1.2626 44 1 1.2672 1.7710 -2.8225 45 1 3.0139 1.9757 -3.0971 46 1 2.3770 0.4063 -2.5496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:45 Heat of formation + Delta-G solvation = 5.887959 kcal Electronic energy + Delta-G solvation = -28423.350265 eV Core-core repulsion = 24543.096655 eV Total energy + Delta-G solvation = -3880.253610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.63084 -40.54211 -39.24263 -38.99234 -35.88881 -34.65296 -34.38448 -32.25781 -31.70696 -30.87399 -28.63196 -27.83038 -27.52389 -26.57408 -24.18443 -23.65542 -22.40591 -21.81746 -21.28277 -20.84045 -19.32876 -18.29593 -17.89090 -17.51342 -17.33188 -16.81509 -16.37621 -15.88813 -15.74083 -15.65354 -15.43659 -15.30741 -14.95893 -14.73675 -14.69206 -14.38034 -14.04860 -13.61436 -13.57078 -13.44927 -13.03313 -12.96780 -12.73845 -12.68594 -12.52848 -12.46197 -12.26096 -12.07114 -11.92759 -11.62042 -11.43387 -11.28535 -11.09690 -10.80367 -10.53321 -10.51099 -10.07375 -9.68479 -8.55431 -7.82019 -5.30980 0.09763 1.06820 1.07755 1.41241 1.44640 1.53253 2.30870 2.33704 2.53049 2.63950 3.33679 3.38627 3.73487 3.91349 3.99859 4.04561 4.12088 4.14825 4.25537 4.29413 4.31996 4.37401 4.45013 4.57774 4.60897 4.63539 4.69950 4.75947 4.87336 4.93868 5.03388 5.04500 5.11709 5.23438 5.33113 5.36334 5.41635 5.56794 5.58937 5.65567 5.73656 5.87190 6.20727 6.37227 6.45905 6.76596 7.19343 7.45390 7.92812 8.43560 9.22991 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.013834 B = 0.004069 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.499060 B = 6880.396313 C = 8391.732804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.314 6.314 3 C 0.308 3.692 4 C -0.320 4.320 5 C 0.585 3.415 6 O -0.587 6.587 7 N -0.703 5.703 8 C 0.135 3.865 9 H 0.048 0.952 10 C -0.107 4.107 11 C -0.118 4.118 12 C 0.153 3.847 13 H 0.023 0.977 14 C -0.129 4.129 15 N -0.604 5.604 16 C -0.249 4.249 17 H 0.072 0.928 18 C -0.052 4.052 19 N -0.934 5.934 20 Si 0.956 3.044 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.299 1.299 24 C 0.183 3.817 25 C 0.103 3.897 26 N -0.288 5.288 27 N -0.364 5.364 28 C 0.083 3.917 29 H 0.121 0.879 30 H 0.029 0.971 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.044 0.956 40 H 0.244 0.756 41 H -0.001 1.001 42 H 0.040 0.960 43 H 0.230 0.770 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.228 2.258 -13.002 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.224 6.224 3 C 0.133 3.867 4 C -0.336 4.336 5 C 0.373 3.627 6 O -0.468 6.468 7 N -0.354 5.354 8 C 0.028 3.972 9 H 0.066 0.934 10 C -0.145 4.145 11 C -0.158 4.158 12 C 0.048 3.952 13 H 0.040 0.960 14 C -0.187 4.187 15 N -0.329 5.329 16 C -0.379 4.379 17 H 0.090 0.910 18 C -0.247 4.247 19 N -0.580 5.580 20 Si 0.785 3.215 21 H -0.188 1.188 22 H -0.215 1.215 23 H -0.227 1.227 24 C 0.056 3.944 25 C -0.083 4.083 26 N -0.111 5.111 27 N -0.153 5.153 28 C -0.056 4.056 29 H 0.139 0.861 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.248 0.752 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.017 0.983 42 H 0.058 0.942 43 H 0.246 0.754 44 H 0.114 0.886 45 H 0.133 0.867 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.075 1.837 -14.050 18.616 hybrid contribution -1.650 -0.703 0.595 1.889 sum 10.425 1.134 -13.454 17.058 Atomic orbital electron populations 1.23228 0.75294 1.05434 1.01249 1.85907 1.22640 1.20761 1.93044 1.19479 0.94865 0.85120 0.87219 1.20146 1.20371 1.00674 0.92406 1.17414 0.77359 0.83223 0.84669 1.90799 1.44834 1.26336 1.84791 1.45574 1.61416 1.23096 1.05306 1.21480 0.97186 0.98740 0.79760 0.93368 1.21650 0.97836 1.00440 0.94596 1.21954 0.97160 1.00976 0.95668 1.20805 0.89239 0.94867 0.90263 0.95966 1.21735 1.00899 1.00481 0.95559 1.44374 1.27584 1.59883 1.01042 1.19488 0.89369 1.18518 1.10550 0.91029 1.25840 0.99141 0.99644 1.00061 1.70151 1.23862 1.35784 1.28249 0.85363 0.79576 0.79253 0.77326 1.18751 1.21484 1.22691 1.20780 0.93054 0.95732 0.84864 1.24386 0.95599 0.96492 0.91843 1.77161 1.20571 0.99886 1.13499 1.49225 1.44807 1.13793 1.07451 1.22387 1.05362 1.02727 0.75106 0.86082 0.95203 0.90397 0.75184 0.90569 0.89640 0.88568 0.93118 0.90287 0.94354 0.93705 0.94717 0.98347 0.94190 0.75352 0.88642 0.86654 0.87975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.10 11.13 113.37 1.26 2.37 16 2 O -0.31 -9.71 9.83 -79.50 -0.78 -10.50 16 3 C 0.31 9.25 6.99 84.44 0.59 9.84 16 4 C -0.32 -10.15 6.15 -20.03 -0.12 -10.27 16 5 C 0.58 22.89 7.76 86.52 0.67 23.56 16 6 O -0.59 -29.02 16.04 2.71 0.04 -28.98 16 7 N -0.70 -23.79 5.07 -445.90 -2.26 -26.05 16 8 C 0.13 5.37 2.61 45.07 0.12 5.49 16 9 H 0.05 2.26 7.58 -2.39 -0.02 2.25 16 10 C -0.11 -3.20 5.35 30.62 0.16 -3.04 16 11 C -0.12 -3.72 5.37 30.67 0.16 -3.56 16 12 C 0.15 6.16 3.49 44.98 0.16 6.32 16 13 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 14 C -0.13 -4.72 7.96 71.98 0.57 -4.14 16 15 N -0.60 -31.06 2.99 -674.52 -2.02 -33.08 16 16 C -0.25 -14.12 8.55 84.03 0.72 -13.40 16 17 H 0.07 3.93 6.27 -2.91 -0.02 3.92 16 18 C -0.05 -3.06 5.02 84.86 0.43 -2.63 16 19 N -0.93 -58.33 11.16 21.65 0.24 -58.09 16 20 Si 0.96 47.74 29.57 68.60 2.03 49.77 16 21 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 24 C 0.18 9.29 4.85 86.31 0.42 9.71 16 25 C 0.10 2.43 11.50 85.71 0.99 3.42 16 26 N -0.29 -6.94 12.47 -56.22 -0.70 -7.64 16 27 N -0.36 -8.52 3.99 -479.80 -1.91 -10.43 16 28 C 0.08 1.07 11.38 127.77 1.45 2.53 16 29 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.41 10.10 7.55 -92.71 -0.70 9.40 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 39 H 0.04 1.69 7.41 -2.38 -0.02 1.67 16 40 H 0.24 14.87 8.31 -92.71 -0.77 14.10 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.04 2.45 6.18 -2.39 -0.01 2.44 16 43 H 0.23 3.31 7.50 -2.91 -0.02 3.29 16 44 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -83.24 374.85 2.50 -80.74 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.29 Total: 18.07 kcal Atomic # 6 Polarization: 18.62 SS G_CDS: 7.58 Total: 26.20 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -6.65 Total: -135.30 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.74 Total: -39.47 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -83.24 2.50 -80.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.629 kcal (2) G-P(sol) polarization free energy of solvation -83.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds