Wall clock time and date at job start Tue Mar 31 2020 14:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35348 * 117.00011 * 2 1 4 4 C 1.38999 * 126.40255 * 88.86345 * 3 2 1 5 5 C 1.46926 * 126.49838 * 359.97438 * 4 3 2 6 6 O 1.21673 * 119.99733 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99953 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99527 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.50378 * 325.00788 * 8 7 5 10 10 C 1.53041 * 109.49376 * 204.93687 * 8 7 5 11 11 C 1.53039 * 109.54092 * 301.41673 * 10 8 7 12 12 C 1.53194 * 109.31124 * 298.63671 * 11 10 8 13 13 H 1.08999 * 109.58422 * 294.70287 * 12 11 10 14 14 C 1.53002 * 109.58466 * 174.42071 * 12 11 10 15 15 N 1.46927 * 108.77714 * 54.63658 * 12 11 10 16 16 C 1.36930 * 120.62928 * 126.40998 * 15 12 11 17 17 H 1.07993 * 120.00603 * 328.31502 * 16 15 12 18 18 C 1.38823 * 119.99653 * 148.30922 * 16 15 12 19 19 N 1.31618 * 119.99885 * 347.33732 * 18 16 15 20 20 Si 1.86796 * 119.99639 * 167.33289 * 18 16 15 21 21 H 1.48507 * 109.47078 * 90.00585 * 20 18 16 22 22 H 1.48504 * 109.46951 * 209.99865 * 20 18 16 23 23 H 1.48490 * 109.47411 * 330.00093 * 20 18 16 24 24 C 1.46997 * 118.75045 * 306.39083 * 15 12 11 25 25 C 1.41457 * 107.00824 * 179.97438 * 4 3 2 26 26 N 1.30316 * 108.13507 * 359.74504 * 25 4 3 27 27 N 1.34657 * 126.40732 * 268.86289 * 3 2 1 28 28 C 1.46492 * 125.74122 * 359.97438 * 27 3 2 29 29 H 1.08995 * 109.47055 * 64.92712 * 1 2 3 30 30 H 1.08997 * 109.47218 * 184.93364 * 1 2 3 31 31 H 1.09000 * 109.46946 * 304.93276 * 1 2 3 32 32 H 0.96994 * 120.00473 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.46065 * 61.44399 * 10 8 7 34 34 H 1.09008 * 109.45644 * 181.40822 * 10 8 7 35 35 H 1.08993 * 109.49706 * 58.58655 * 11 10 8 36 36 H 1.09003 * 109.49624 * 178.68418 * 11 10 8 37 37 H 1.09007 * 109.46909 * 59.99754 * 14 12 11 38 38 H 1.08999 * 109.47375 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47243 * 300.00203 * 14 12 11 40 40 H 0.97000 * 119.99702 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.57961 * 293.82657 * 24 15 12 42 42 H 1.09002 * 109.62338 * 173.38578 * 24 15 12 43 43 H 1.08005 * 125.93484 * 179.97438 * 25 4 3 44 44 H 1.08998 * 109.47713 * 84.92734 * 28 27 3 45 45 H 1.09001 * 109.47434 * 324.91898 * 28 27 3 46 46 H 1.09000 * 109.46861 * 204.92323 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.3983 1.9510 1.1185 5 6 2.1769 1.5790 2.5226 6 8 1.6336 0.5247 2.7941 7 7 2.5765 2.4051 3.5096 8 6 2.3551 2.0343 4.9096 9 1 1.4140 1.4915 4.9979 10 6 2.2984 3.2987 5.7699 11 6 3.6065 4.0787 5.6205 12 6 4.7715 3.2127 6.1100 13 1 4.6686 3.0328 7.1801 14 6 6.0947 3.9302 5.8355 15 7 4.7459 1.9334 5.3878 16 6 5.8566 1.4842 4.7248 17 1 6.5443 2.1901 4.2833 18 6 6.0986 0.1212 4.6202 19 7 5.4136 -0.7272 5.3574 20 14 7.3962 -0.5085 3.4333 21 1 8.7076 -0.5810 4.1264 22 1 7.0141 -1.8613 2.9543 23 1 7.4986 0.4158 2.2757 24 6 3.5055 1.1445 5.3908 25 6 3.0129 3.1354 0.6489 26 7 3.0281 3.0955 -0.6536 27 7 2.4255 1.9083 -1.0835 28 6 2.2468 1.4954 -2.4776 29 1 -0.3633 0.4355 -0.9308 30 1 -0.3633 -1.0238 0.0884 31 1 -0.3633 0.5885 0.8425 32 1 3.0099 3.2454 3.2932 33 1 1.4649 3.9217 5.4454 34 1 2.1587 3.0209 6.8148 35 1 3.7594 4.3353 4.5723 36 1 3.5562 4.9908 6.2152 37 1 6.1065 4.8846 6.3619 38 1 6.9222 3.3127 6.1848 39 1 6.1980 4.1047 4.7645 40 1 5.5825 -1.6796 5.2840 41 1 3.2981 0.7939 6.4018 42 1 3.6127 0.2914 4.7208 43 1 3.4051 3.9325 1.2632 44 1 1.2507 1.7804 -2.8162 45 1 2.3609 0.4140 -2.5538 46 1 2.9959 1.9845 -3.1003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072019886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:49 Heat of formation + Delta-G solvation = 35.472170 kcal Electronic energy + Delta-G solvation = -29160.817672 eV Core-core repulsion = 25281.846929 eV Total energy + Delta-G solvation = -3878.970743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.43896 -39.05817 -38.07418 -37.24555 -33.94781 -33.39766 -32.60130 -30.72250 -29.85649 -29.58476 -27.45555 -26.79369 -25.99733 -24.85271 -22.70811 -22.07223 -21.17197 -20.40382 -20.01021 -18.59477 -18.22325 -16.72010 -16.39929 -16.14347 -15.71795 -15.18796 -14.74152 -14.70516 -14.51752 -14.06330 -13.80473 -13.78488 -13.60545 -13.33956 -13.06477 -12.81687 -12.80864 -12.57479 -12.37730 -11.94254 -11.77598 -11.26906 -11.12522 -11.08394 -10.86454 -10.80275 -10.62410 -10.31314 -10.25314 -10.21988 -9.88223 -9.44636 -9.43126 -9.37900 -9.17631 -8.55509 -8.35402 -8.13599 -6.46237 -5.65331 -3.11918 1.35788 2.11768 2.31424 3.44537 3.51944 3.52696 3.53337 3.85996 4.10321 4.45696 4.58902 4.90853 4.95735 5.00598 5.19940 5.23073 5.26939 5.39441 5.40626 5.45179 5.52041 5.56450 5.60082 5.68110 5.86293 6.09905 6.10456 6.19385 6.23992 6.40151 6.42115 6.44301 6.52854 6.62310 6.69339 6.80185 7.02155 7.13561 7.22043 7.37329 7.51833 7.53429 7.82149 7.93552 8.30673 8.60834 9.01845 9.34005 9.97778 10.54896 11.42528 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.005145 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.211597 B = 5441.167841 C = 6228.559286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.295 6.295 3 C 0.313 3.687 4 C -0.283 4.283 5 C 0.592 3.408 6 O -0.547 6.547 7 N -0.696 5.696 8 C 0.121 3.879 9 H 0.074 0.926 10 C -0.118 4.118 11 C -0.130 4.130 12 C 0.166 3.834 13 H 0.023 0.977 14 C -0.135 4.135 15 N -0.582 5.582 16 C -0.248 4.248 17 H 0.065 0.935 18 C 0.009 3.991 19 N -0.899 5.899 20 Si 0.895 3.105 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.164 3.836 25 C 0.093 3.907 26 N -0.284 5.284 27 N -0.374 5.374 28 C 0.096 3.904 29 H 0.042 0.958 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.392 0.608 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.252 0.748 41 H 0.024 0.976 42 H 0.095 0.905 43 H 0.193 0.807 44 H 0.075 0.925 45 H 0.089 0.911 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.183 8.612 -10.380 16.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.204 6.204 3 C 0.141 3.859 4 C -0.298 4.298 5 C 0.379 3.621 6 O -0.426 6.426 7 N -0.346 5.346 8 C 0.015 3.985 9 H 0.092 0.908 10 C -0.156 4.156 11 C -0.170 4.170 12 C 0.059 3.941 13 H 0.041 0.959 14 C -0.193 4.193 15 N -0.305 5.305 16 C -0.378 4.378 17 H 0.083 0.917 18 C -0.190 4.190 19 N -0.543 5.543 20 Si 0.725 3.275 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.037 3.963 25 C -0.093 4.093 26 N -0.107 5.107 27 N -0.164 5.164 28 C -0.045 4.045 29 H 0.061 0.939 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.227 0.773 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.113 0.887 43 H 0.210 0.790 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.184 7.965 -11.326 17.188 hybrid contribution 0.638 -0.421 -0.107 0.772 sum -9.547 7.544 -11.433 16.696 Atomic orbital electron populations 1.23073 0.77014 1.04432 1.00644 1.86013 1.21146 1.20375 1.92866 1.19278 0.95365 0.84939 0.86345 1.20264 1.17163 0.98415 0.93968 1.16837 0.78451 0.83633 0.83199 1.90769 1.44571 1.23175 1.84036 1.45569 1.60625 1.22548 1.05848 1.21739 1.00797 0.96349 0.79567 0.90761 1.21687 0.97339 0.96536 1.00059 1.22068 0.96299 0.97944 1.00648 1.20455 0.92167 0.87310 0.94188 0.95896 1.21790 0.98549 0.98000 1.00916 1.44015 1.09002 1.19137 1.58336 1.19009 1.01667 0.90040 1.27071 0.91718 1.25100 0.98246 0.97110 0.98575 1.69960 1.42887 1.01763 1.39685 0.86424 0.81530 0.78331 0.81237 1.21548 1.21709 1.20620 1.21176 0.82738 0.93499 0.98894 1.23901 0.96410 0.97276 0.91743 1.77167 1.20048 0.99963 1.13482 1.48869 1.46230 1.14910 1.06355 1.21919 1.03258 1.01713 0.77588 0.93944 0.87787 0.92084 0.77327 0.93097 0.91220 0.92691 0.92970 0.94541 0.92123 0.92944 0.93751 0.95841 0.88670 0.78993 0.90685 0.89235 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 11.13 101.05 1.12 1.63 16 2 O -0.30 -4.75 9.83 -24.99 -0.25 -5.00 16 3 C 0.31 5.17 6.99 -16.03 -0.11 5.05 16 4 C -0.28 -4.98 6.15 -104.87 -0.64 -5.62 16 5 C 0.59 11.91 7.76 -12.74 -0.10 11.81 16 6 O -0.55 -12.75 16.05 -2.04 -0.03 -12.78 16 7 N -0.70 -12.78 4.91 -54.92 -0.27 -13.05 16 8 C 0.12 2.34 2.81 -67.81 -0.19 2.15 16 9 H 0.07 1.47 7.58 -51.93 -0.39 1.08 16 10 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 11 C -0.13 -2.06 5.21 -26.61 -0.14 -2.20 16 12 C 0.17 3.27 3.50 -67.60 -0.24 3.03 16 13 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 14 C -0.14 -2.46 7.96 37.16 0.30 -2.16 16 15 N -0.58 -13.96 2.90 -164.72 -0.48 -14.43 16 16 C -0.25 -6.65 8.53 -15.06 -0.13 -6.78 16 17 H 0.07 1.70 6.28 -52.49 -0.33 1.37 16 18 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16 19 N -0.90 -26.97 11.20 55.49 0.62 -26.35 16 20 Si 0.89 22.76 29.57 -169.99 -5.03 17.74 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.16 3.96 4.86 -3.67 -0.02 3.94 16 25 C 0.09 1.39 11.50 -16.97 -0.20 1.20 16 26 N -0.28 -4.24 12.48 30.88 0.39 -3.85 16 27 N -0.37 -5.25 3.99 -67.68 -0.27 -5.52 16 28 C 0.10 0.86 11.38 59.84 0.68 1.54 16 29 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.39 6.35 5.72 -40.82 -0.23 6.12 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 35 H 0.05 0.84 6.40 -51.93 -0.33 0.51 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 38 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 39 H 0.05 0.95 7.39 -51.93 -0.38 0.57 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 2.75 6.20 -51.93 -0.32 2.43 16 43 H 0.19 2.25 7.50 -52.48 -0.39 1.86 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -34.95 371.35 -6.61 -41.56 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.00 Total: 4.34 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 0.10 Total: 11.75 kcal Atomic # 7 Polarization: -63.19 SS G_CDS: -0.01 Total: -63.20 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.28 Total: -17.78 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.03 Total: 17.74 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.95 -6.61 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.031 kcal (2) G-P(sol) polarization free energy of solvation -34.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds