Wall clock time and date at job start Tue Mar 31 2020 14:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35348 * 117.00011 * 2 1 4 4 C 1.38999 * 126.40255 * 88.86345 * 3 2 1 5 5 C 1.46926 * 126.49838 * 359.97438 * 4 3 2 6 6 O 1.21673 * 119.99733 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99953 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99527 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.50378 * 325.00788 * 8 7 5 10 10 C 1.53041 * 109.49376 * 204.93687 * 8 7 5 11 11 C 1.53039 * 109.54092 * 301.41673 * 10 8 7 12 12 C 1.53194 * 109.31124 * 298.63671 * 11 10 8 13 13 H 1.08999 * 109.58422 * 294.70287 * 12 11 10 14 14 C 1.53002 * 109.58466 * 174.42071 * 12 11 10 15 15 N 1.46927 * 108.77714 * 54.63658 * 12 11 10 16 16 C 1.36930 * 120.62928 * 126.40998 * 15 12 11 17 17 H 1.07993 * 120.00603 * 328.31502 * 16 15 12 18 18 C 1.38823 * 119.99653 * 148.30922 * 16 15 12 19 19 N 1.31618 * 119.99885 * 347.33732 * 18 16 15 20 20 Si 1.86796 * 119.99639 * 167.33289 * 18 16 15 21 21 H 1.48507 * 109.47078 * 90.00585 * 20 18 16 22 22 H 1.48504 * 109.46951 * 209.99865 * 20 18 16 23 23 H 1.48490 * 109.47411 * 330.00093 * 20 18 16 24 24 C 1.46997 * 118.75045 * 306.39083 * 15 12 11 25 25 C 1.41457 * 107.00824 * 179.97438 * 4 3 2 26 26 N 1.30316 * 108.13507 * 359.74504 * 25 4 3 27 27 N 1.34657 * 126.40732 * 268.86289 * 3 2 1 28 28 C 1.46492 * 125.74122 * 359.97438 * 27 3 2 29 29 H 1.08995 * 109.47055 * 64.92712 * 1 2 3 30 30 H 1.08997 * 109.47218 * 184.93364 * 1 2 3 31 31 H 1.09000 * 109.46946 * 304.93276 * 1 2 3 32 32 H 0.96994 * 120.00473 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.46065 * 61.44399 * 10 8 7 34 34 H 1.09008 * 109.45644 * 181.40822 * 10 8 7 35 35 H 1.08993 * 109.49706 * 58.58655 * 11 10 8 36 36 H 1.09003 * 109.49624 * 178.68418 * 11 10 8 37 37 H 1.09007 * 109.46909 * 59.99754 * 14 12 11 38 38 H 1.08999 * 109.47375 * 179.97438 * 14 12 11 39 39 H 1.08998 * 109.47243 * 300.00203 * 14 12 11 40 40 H 0.97000 * 119.99702 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.57961 * 293.82657 * 24 15 12 42 42 H 1.09002 * 109.62338 * 173.38578 * 24 15 12 43 43 H 1.08005 * 125.93484 * 179.97438 * 25 4 3 44 44 H 1.08998 * 109.47713 * 84.92734 * 28 27 3 45 45 H 1.09001 * 109.47434 * 324.91898 * 28 27 3 46 46 H 1.09000 * 109.46861 * 204.92323 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.3983 1.9510 1.1185 5 6 2.1769 1.5790 2.5226 6 8 1.6336 0.5247 2.7941 7 7 2.5765 2.4051 3.5096 8 6 2.3551 2.0343 4.9096 9 1 1.4140 1.4915 4.9979 10 6 2.2984 3.2987 5.7699 11 6 3.6065 4.0787 5.6205 12 6 4.7715 3.2127 6.1100 13 1 4.6686 3.0328 7.1801 14 6 6.0947 3.9302 5.8355 15 7 4.7459 1.9334 5.3878 16 6 5.8566 1.4842 4.7248 17 1 6.5443 2.1901 4.2833 18 6 6.0986 0.1212 4.6202 19 7 5.4136 -0.7272 5.3574 20 14 7.3962 -0.5085 3.4333 21 1 8.7076 -0.5810 4.1264 22 1 7.0141 -1.8613 2.9543 23 1 7.4986 0.4158 2.2757 24 6 3.5055 1.1445 5.3908 25 6 3.0129 3.1354 0.6489 26 7 3.0281 3.0955 -0.6536 27 7 2.4255 1.9083 -1.0835 28 6 2.2468 1.4954 -2.4776 29 1 -0.3633 0.4355 -0.9308 30 1 -0.3633 -1.0238 0.0884 31 1 -0.3633 0.5885 0.8425 32 1 3.0099 3.2454 3.2932 33 1 1.4649 3.9217 5.4454 34 1 2.1587 3.0209 6.8148 35 1 3.7594 4.3353 4.5723 36 1 3.5562 4.9908 6.2152 37 1 6.1065 4.8846 6.3619 38 1 6.9222 3.3127 6.1848 39 1 6.1980 4.1047 4.7645 40 1 5.5825 -1.6796 5.2840 41 1 3.2981 0.7939 6.4018 42 1 3.6127 0.2914 4.7208 43 1 3.4051 3.9325 1.2632 44 1 1.2507 1.7804 -2.8162 45 1 2.3609 0.4140 -2.5538 46 1 2.9959 1.9845 -3.1003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072019886.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:48 Heat of formation + Delta-G solvation = 9.802039 kcal Electronic energy + Delta-G solvation = -29161.930813 eV Core-core repulsion = 25281.846929 eV Total energy + Delta-G solvation = -3880.083883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.59649 -40.61664 -39.21356 -38.86195 -35.66012 -34.53360 -34.31032 -32.20562 -31.69440 -30.81483 -28.52949 -27.81374 -27.58758 -26.62292 -24.09247 -23.74252 -22.36671 -21.88464 -21.38542 -20.26761 -19.40848 -18.21494 -17.86662 -17.50557 -17.13378 -16.74904 -16.25087 -15.86206 -15.78622 -15.64691 -15.40496 -15.31370 -14.83839 -14.68108 -14.54652 -14.36136 -13.94667 -13.65347 -13.58710 -13.47365 -12.92387 -12.90521 -12.84419 -12.57096 -12.49080 -12.41445 -12.38479 -12.11078 -12.03242 -11.51210 -11.33354 -11.13703 -10.99347 -10.78007 -10.48850 -10.48031 -9.96507 -9.59074 -8.48365 -7.78050 -5.25441 0.17342 1.07640 1.11721 1.38860 1.42928 1.48764 2.30382 2.51414 2.58074 2.68036 3.38477 3.41801 3.69684 3.98096 4.03075 4.11238 4.17811 4.19021 4.25629 4.30019 4.33484 4.38396 4.57298 4.58518 4.61803 4.66002 4.73784 4.82223 4.89793 5.03492 5.07316 5.11805 5.17733 5.18873 5.33772 5.36331 5.40943 5.63601 5.68071 5.76393 5.81288 5.85659 6.25849 6.40043 6.50150 6.84948 7.24029 7.52813 7.98231 8.49419 9.26645 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.005145 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.211597 B = 5441.167841 C = 6228.559286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.320 6.320 3 C 0.310 3.690 4 C -0.320 4.320 5 C 0.587 3.413 6 O -0.592 6.592 7 N -0.686 5.686 8 C 0.131 3.869 9 H 0.063 0.937 10 C -0.109 4.109 11 C -0.119 4.119 12 C 0.154 3.846 13 H 0.012 0.988 14 C -0.128 4.128 15 N -0.593 5.593 16 C -0.230 4.230 17 H 0.075 0.925 18 C -0.054 4.054 19 N -0.937 5.937 20 Si 0.946 3.054 21 H -0.281 1.281 22 H -0.308 1.308 23 H -0.271 1.271 24 C 0.174 3.826 25 C 0.101 3.899 26 N -0.290 5.290 27 N -0.366 5.366 28 C 0.084 3.916 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.043 0.957 32 H 0.405 0.595 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.053 0.947 40 H 0.241 0.759 41 H -0.006 1.006 42 H 0.042 0.958 43 H 0.221 0.779 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.533 12.039 -12.019 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.229 6.229 3 C 0.135 3.865 4 C -0.336 4.336 5 C 0.375 3.625 6 O -0.474 6.474 7 N -0.336 5.336 8 C 0.025 3.975 9 H 0.081 0.919 10 C -0.147 4.147 11 C -0.158 4.158 12 C 0.049 3.951 13 H 0.030 0.970 14 C -0.185 4.185 15 N -0.317 5.317 16 C -0.361 4.361 17 H 0.092 0.908 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.776 3.224 21 H -0.208 1.208 22 H -0.235 1.235 23 H -0.196 1.196 24 C 0.047 3.953 25 C -0.086 4.086 26 N -0.113 5.113 27 N -0.155 5.155 28 C -0.055 4.055 29 H 0.095 0.905 30 H 0.138 0.862 31 H 0.062 0.938 32 H 0.242 0.758 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.012 0.988 42 H 0.061 0.939 43 H 0.238 0.762 44 H 0.121 0.879 45 H 0.116 0.884 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.519 11.476 -12.996 20.279 hybrid contribution 0.704 -1.483 0.375 1.684 sum -9.815 9.993 -12.621 18.854 Atomic orbital electron populations 1.23291 0.74870 1.05546 1.01683 1.85953 1.23294 1.20592 1.93062 1.19430 0.95128 0.84871 0.87083 1.20213 1.19923 1.00512 0.92903 1.17299 0.77629 0.83037 0.84550 1.90734 1.46662 1.25085 1.84889 1.45433 1.60318 1.22737 1.05097 1.21448 0.97740 0.97524 0.80806 0.91854 1.21657 0.98927 0.94832 0.99300 1.21963 0.93773 0.98194 1.01870 1.20778 0.95212 0.85924 0.93225 0.97047 1.21722 0.96354 0.99092 1.01379 1.44227 1.08162 1.20443 1.58881 1.19354 1.01565 0.89860 1.25353 0.90764 1.25768 1.00546 0.97897 1.00652 1.70139 1.45117 1.01163 1.41999 0.85582 0.79910 0.77000 0.79921 1.20795 1.23512 1.19593 1.20830 0.85076 0.93262 0.96132 1.24271 0.95531 0.96892 0.91888 1.77138 1.20225 1.00513 1.13395 1.49218 1.44776 1.14053 1.07471 1.22369 1.05490 1.02523 0.75144 0.90495 0.86244 0.93842 0.75787 0.89487 0.91026 0.91558 0.89103 0.90595 0.94878 0.92835 0.95006 0.98766 0.93918 0.76233 0.87861 0.88443 0.87075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 11.13 113.37 1.26 2.17 16 2 O -0.32 -10.29 9.83 -79.44 -0.78 -11.07 16 3 C 0.31 10.02 6.99 84.44 0.59 10.61 16 4 C -0.32 -11.15 6.15 -20.03 -0.12 -11.27 16 5 C 0.59 24.00 7.76 86.52 0.67 24.68 16 6 O -0.59 -28.95 16.05 2.67 0.04 -28.91 16 7 N -0.69 -24.77 4.91 -445.89 -2.19 -26.96 16 8 C 0.13 5.07 2.81 45.07 0.13 5.19 16 9 H 0.06 2.59 7.58 -2.39 -0.02 2.57 16 10 C -0.11 -3.13 5.59 30.62 0.17 -2.96 16 11 C -0.12 -3.28 5.21 30.67 0.16 -3.12 16 12 C 0.15 5.79 3.50 44.98 0.16 5.94 16 13 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 14 C -0.13 -4.30 7.96 71.98 0.57 -3.73 16 15 N -0.59 -28.66 2.90 -675.05 -1.96 -30.61 16 16 C -0.23 -12.46 8.53 84.04 0.72 -11.74 16 17 H 0.07 3.83 6.28 -2.91 -0.02 3.81 16 18 C -0.05 -3.16 5.00 84.86 0.42 -2.74 16 19 N -0.94 -59.34 11.20 21.65 0.24 -59.10 16 20 Si 0.95 48.07 29.57 68.60 2.03 50.10 16 21 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.31 -16.34 7.11 99.48 0.71 -15.63 16 23 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 24 C 0.17 8.78 4.86 86.35 0.42 9.20 16 25 C 0.10 2.81 11.50 85.71 0.99 3.80 16 26 N -0.29 -8.00 12.48 -56.23 -0.70 -8.71 16 27 N -0.37 -9.56 3.99 -479.83 -1.91 -11.48 16 28 C 0.08 1.26 11.38 127.77 1.45 2.72 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.41 12.21 5.72 -92.71 -0.53 11.68 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.07 1.72 6.40 -2.39 -0.02 1.70 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 38 H 0.03 1.27 7.68 -2.39 -0.02 1.25 16 39 H 0.05 1.78 7.39 -2.39 -0.02 1.76 16 40 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 41 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 42 H 0.04 2.61 6.20 -2.39 -0.01 2.60 16 43 H 0.22 4.49 7.50 -2.91 -0.02 4.46 16 44 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -81.62 371.35 2.82 -78.80 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.46 Total: 19.19 kcal Atomic # 6 Polarization: 21.16 SS G_CDS: 7.59 Total: 28.75 kcal Atomic # 7 Polarization: -130.33 SS G_CDS: -6.52 Total: -136.85 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.74 Total: -39.98 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -81.62 2.82 -78.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072019886.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.600 kcal (2) G-P(sol) polarization free energy of solvation -81.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds