Wall clock time and date at job start Tue Mar 31 2020 14:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99695 * 2 1 4 4 H 1.09000 * 109.46889 * 30.00214 * 3 2 1 5 5 C 1.50694 * 109.47428 * 269.99559 * 3 2 1 6 6 O 1.21287 * 120.00002 * 342.97002 * 5 3 2 7 7 N 1.34778 * 120.00078 * 162.96167 * 5 3 2 8 8 C 1.47419 * 125.64757 * 4.41246 * 7 5 3 9 9 C 1.55130 * 104.71993 * 155.81826 * 8 7 5 10 10 C 1.55156 * 101.48622 * 37.29880 * 9 8 7 11 11 H 1.08998 * 110.71956 * 205.96472 * 10 9 8 12 12 N 1.46505 * 110.71677 * 82.69395 * 10 9 8 13 13 C 1.36933 * 119.99820 * 91.47881 * 12 10 9 14 14 H 1.08007 * 120.00296 * 359.97438 * 13 12 10 15 15 C 1.38818 * 120.00208 * 179.97438 * 13 12 10 16 16 N 1.31612 * 120.00335 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99514 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.46854 * 89.99929 * 17 15 13 19 19 H 1.48494 * 109.46721 * 209.99997 * 17 15 13 20 20 H 1.48496 * 109.47161 * 330.00036 * 17 15 13 21 21 C 1.47021 * 125.64944 * 184.72624 * 7 5 3 22 22 H 1.08998 * 109.88118 * 300.59747 * 21 7 5 23 23 C 1.53007 * 109.88157 * 61.60610 * 21 7 5 24 24 C 1.50706 * 109.46669 * 149.99971 * 3 2 1 25 25 C 1.39874 * 126.04039 * 43.77387 * 24 3 2 26 26 N 1.30829 * 108.20257 * 179.73415 * 25 24 3 27 27 N 1.40080 * 108.20697 * 0.02562 * 26 25 24 28 28 C 1.46502 * 126.03817 * 179.97438 * 27 26 25 29 29 C 1.34946 * 107.92652 * 359.97438 * 27 26 25 30 30 H 1.09006 * 109.47337 * 59.99786 * 1 2 3 31 31 H 1.08996 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47433 * 300.00448 * 1 2 3 33 33 H 1.08999 * 110.37391 * 274.75228 * 8 7 5 34 34 H 1.09003 * 110.36405 * 37.07640 * 8 7 5 35 35 H 1.09001 * 111.19347 * 279.19490 * 9 8 7 36 36 H 1.09001 * 110.93595 * 155.29281 * 9 8 7 37 37 H 0.96995 * 119.99867 * 271.47283 * 12 10 9 38 38 H 0.97000 * 119.99983 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47369 * 58.54867 * 23 21 7 40 40 H 1.09000 * 109.46877 * 178.54871 * 23 21 7 41 41 H 1.09002 * 109.46663 * 298.54319 * 23 21 7 42 42 H 1.08005 * 125.89667 * 359.71546 * 25 24 3 43 43 H 1.08995 * 109.47392 * 89.97336 * 28 27 26 44 44 H 1.09006 * 109.47090 * 209.97225 * 28 27 26 45 45 H 1.09002 * 109.47227 * 329.96736 * 28 27 26 46 46 H 1.08001 * 126.12878 * 180.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2146 1.7644 -1.4207 6 8 2.1928 0.9590 -2.3273 7 7 2.4214 3.0700 -1.6841 8 6 2.5629 4.1376 -0.6774 9 6 3.3723 5.2502 -1.3939 10 6 2.7941 5.1757 -2.8317 11 1 3.5207 5.5384 -3.5588 12 7 1.5423 5.9310 -2.9267 13 6 1.5645 7.2493 -3.2962 14 1 2.5048 7.7325 -3.5172 15 6 0.3784 7.9649 -3.3867 16 7 0.3998 9.2322 -3.7413 17 14 -1.2479 7.1293 -3.0038 18 1 -1.5552 7.2829 -1.5591 19 1 -2.3275 7.7552 -3.8088 20 1 -1.1538 5.6858 -3.3392 21 6 2.5369 3.6662 -3.0230 22 1 3.3686 3.2113 -3.5609 23 6 1.2364 3.4544 -3.8008 24 6 3.3386 1.2639 0.7105 25 6 4.3236 0.2828 0.5569 26 7 5.3318 0.5910 1.3316 27 7 5.0196 1.7795 2.0041 28 6 5.8751 2.4737 2.9697 29 6 3.7916 2.1720 1.6055 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.5829 4.5103 -0.3792 34 1 3.1102 3.7702 0.1908 35 1 4.4391 5.0263 -1.3897 36 1 3.1779 6.2241 -0.9445 37 1 0.6979 5.4971 -2.7280 38 1 -0.4291 9.7320 -3.8049 39 1 0.4083 3.9049 -3.2536 40 1 1.3200 3.9212 -4.7823 41 1 1.0546 2.3864 -3.9207 42 1 4.2623 -0.5804 -0.0894 43 1 6.5092 3.1885 2.4453 44 1 5.2531 3.0018 3.6925 45 1 6.4996 1.7474 3.4899 46 1 3.2647 3.0532 1.9406 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074772297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:10 Heat of formation + Delta-G solvation = 15.118436 kcal Electronic energy + Delta-G solvation = -28746.287053 eV Core-core repulsion = 24866.433706 eV Total energy + Delta-G solvation = -3879.853347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.43379 -41.24134 -39.45373 -37.99386 -35.85486 -34.38288 -33.65096 -32.61096 -32.04005 -30.93224 -29.11823 -27.22944 -26.90269 -26.50525 -25.08167 -23.69682 -22.12471 -21.88792 -21.07124 -20.07054 -19.78155 -18.60204 -17.87645 -17.56875 -17.27024 -16.51241 -16.32334 -16.16203 -16.13249 -15.75765 -15.27091 -15.09378 -14.92295 -14.68641 -14.34651 -14.21862 -14.00380 -13.89734 -13.57141 -13.41053 -13.31055 -13.22593 -13.02753 -12.89735 -12.56763 -12.44673 -12.35824 -12.30795 -11.96241 -11.74280 -11.62440 -11.57036 -11.51733 -10.96166 -10.50093 -10.37419 -9.65184 -9.44688 -9.29661 -7.98988 -5.31843 0.82928 1.38209 1.40812 1.44927 1.47722 1.60672 1.73572 1.90433 2.49773 2.84764 3.30299 3.48256 3.55975 3.64478 3.72819 3.81131 3.96565 4.01675 4.16556 4.20695 4.26207 4.31293 4.35383 4.49149 4.49707 4.52039 4.53389 4.66966 4.74233 4.76296 4.80758 4.83004 4.88125 4.90689 5.01922 5.18422 5.24212 5.35184 5.39175 5.51530 5.82570 5.99149 6.08022 6.24524 6.56322 6.64378 7.10135 7.15480 7.85245 8.04298 9.22375 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014814 B = 0.004032 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.686294 B = 6942.614107 C = 7811.423912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.374 6.374 3 C 0.169 3.831 4 H 0.112 0.888 5 C 0.507 3.493 6 O -0.570 6.570 7 N -0.605 5.605 8 C 0.099 3.901 9 C -0.145 4.145 10 C 0.169 3.831 11 H 0.071 0.929 12 N -0.737 5.737 13 C -0.222 4.222 14 H 0.064 0.936 15 C -0.055 4.055 16 N -0.982 5.982 17 Si 0.940 3.060 18 H -0.273 1.273 19 H -0.302 1.302 20 H -0.258 1.258 21 C 0.128 3.872 22 H 0.074 0.926 23 C -0.144 4.144 24 C -0.258 4.258 25 C 0.065 3.935 26 N -0.328 5.328 27 N -0.370 5.370 28 C 0.090 3.910 29 C 0.089 3.911 30 H 0.030 0.970 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.366 0.634 38 H 0.256 0.744 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.175 0.825 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.091 0.909 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.779 -15.170 17.242 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.291 6.291 3 C 0.107 3.893 4 H 0.130 0.870 5 C 0.296 3.704 6 O -0.449 6.449 7 N -0.340 5.340 8 C -0.023 4.023 9 C -0.185 4.185 10 C 0.060 3.940 11 H 0.089 0.911 12 N -0.382 5.382 13 C -0.353 4.353 14 H 0.082 0.918 15 C -0.247 4.247 16 N -0.633 5.633 17 Si 0.768 3.232 18 H -0.199 1.199 19 H -0.229 1.229 20 H -0.183 1.183 21 C 0.024 3.976 22 H 0.092 0.908 23 C -0.202 4.202 24 C -0.271 4.271 25 C -0.120 4.120 26 N -0.150 5.150 27 N -0.150 5.150 28 C -0.049 4.049 29 C -0.059 4.059 30 H 0.048 0.952 31 H 0.122 0.878 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.202 0.798 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.192 0.808 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.110 0.890 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.232 -15.928 17.253 24.570 hybrid contribution -2.136 0.349 -0.838 2.321 sum 5.096 -15.580 16.415 23.198 Atomic orbital electron populations 1.23051 0.79331 1.04363 1.00557 1.87978 1.21364 1.25488 1.94297 1.19859 0.93234 0.86879 0.89370 0.87007 1.21496 0.75881 0.80445 0.92547 1.90655 1.52246 1.53362 1.48597 1.48710 1.70547 1.06569 1.08152 1.22665 1.00901 0.86867 0.91865 1.23354 0.99425 0.98832 0.96923 1.21307 0.88223 0.87868 0.96608 0.91098 1.42788 1.04071 1.08459 1.82849 1.19016 0.93893 0.86197 1.36169 0.91780 1.25319 1.00658 0.96157 1.02577 1.69854 1.27231 1.09560 1.56621 0.85657 0.80656 0.78738 0.78122 1.19885 1.22901 1.18330 1.21824 0.97923 0.93741 0.84092 0.90785 1.21878 0.97266 1.00697 1.00402 1.19435 0.97978 1.01270 1.08391 1.23751 0.90816 0.99790 0.97683 1.77368 1.23937 1.00836 1.12850 1.48857 1.13955 1.18357 1.33864 1.22303 0.95175 0.97095 0.90371 1.22790 0.87415 1.00075 0.95652 0.95161 0.87847 0.91365 0.90900 0.88093 0.89748 0.89806 0.79797 0.93475 0.93363 0.91796 0.93001 0.80752 0.89472 0.85987 0.89000 0.76417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.81 113.37 1.23 1.66 16 2 O -0.37 -9.55 9.77 -130.52 -1.27 -10.82 16 3 C 0.17 3.91 2.31 29.10 0.07 3.98 16 4 H 0.11 1.92 7.50 -2.39 -0.02 1.90 16 5 C 0.51 15.30 6.82 87.65 0.60 15.90 16 6 O -0.57 -21.77 15.81 15.41 0.24 -21.53 16 7 N -0.60 -17.07 3.06 -787.63 -2.41 -19.49 16 8 C 0.10 2.22 6.43 86.93 0.56 2.78 16 9 C -0.14 -3.84 6.78 32.06 0.22 -3.62 16 10 C 0.17 5.76 3.48 46.18 0.16 5.92 16 11 H 0.07 2.52 8.09 -2.39 -0.02 2.50 16 12 N -0.74 -30.93 4.35 -317.32 -1.38 -32.31 16 13 C -0.22 -11.60 10.44 84.04 0.88 -10.73 16 14 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 15 C -0.06 -3.08 5.50 84.86 0.47 -2.62 16 16 N -0.98 -60.31 13.97 21.65 0.30 -60.01 16 17 Si 0.94 43.23 27.74 68.60 1.90 45.13 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 20 H -0.26 -10.94 6.41 99.48 0.64 -10.31 16 21 C 0.13 4.13 3.40 45.34 0.15 4.28 16 22 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 23 C -0.14 -4.99 8.51 71.98 0.61 -4.38 16 24 C -0.26 -5.58 4.71 -20.14 -0.09 -5.67 16 25 C 0.07 1.65 11.77 85.24 1.00 2.65 16 26 N -0.33 -8.02 12.57 -57.02 -0.72 -8.74 16 27 N -0.37 -6.22 4.01 -369.56 -1.48 -7.70 16 28 C 0.09 0.67 11.47 127.77 1.47 2.13 16 29 C 0.09 1.35 9.52 83.54 0.80 2.14 16 30 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.10 1.61 4.29 -2.39 -0.01 1.60 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.37 15.21 3.53 -92.71 -0.33 14.88 16 38 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.05 1.74 6.09 -2.39 -0.01 1.72 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.05 1.83 7.04 -2.39 -0.02 1.82 16 42 H 0.18 4.53 8.06 -2.91 -0.02 4.50 16 43 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.12 0.12 8.14 -2.38 -0.02 0.10 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.22 1.35 7.21 -2.91 -0.02 1.33 16 Total: -1.00 -76.92 371.55 3.88 -73.04 By element: Atomic # 1 Polarization: 27.39 SS G_CDS: 0.59 Total: 27.98 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 8.11 Total: 14.44 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -5.69 Total: -128.24 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.03 Total: -32.35 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 1.90 Total: 45.13 kcal Total: -76.92 3.88 -73.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074772297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.157 kcal (2) G-P(sol) polarization free energy of solvation -76.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds