Wall clock time and date at job start Tue Mar 31 2020 14:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42903 * 113.99871 * 2 1 4 4 H 1.08999 * 109.47354 * 29.99955 * 3 2 1 5 5 C 1.50702 * 109.47024 * 149.99761 * 3 2 1 6 6 O 1.21286 * 120.00141 * 14.98623 * 5 3 2 7 7 N 1.34778 * 120.00063 * 194.97861 * 5 3 2 8 8 C 1.47422 * 125.64527 * 5.33487 * 7 5 3 9 9 C 1.54911 * 104.83297 * 204.08491 * 8 7 5 10 10 C 1.55157 * 101.57839 * 322.99320 * 9 8 7 11 11 H 1.09001 * 110.71843 * 277.13090 * 10 9 8 12 12 N 1.46500 * 110.71770 * 153.86442 * 10 9 8 13 13 C 1.36939 * 120.00324 * 86.45380 * 12 10 9 14 14 H 1.08003 * 119.99682 * 359.97438 * 13 12 10 15 15 C 1.38811 * 120.00121 * 179.97438 * 13 12 10 16 16 N 1.31613 * 120.00011 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47182 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47213 * 120.00493 * 17 15 13 20 20 H 1.48500 * 109.47076 * 239.99938 * 17 15 13 21 21 C 1.47021 * 125.64941 * 185.01871 * 7 5 3 22 22 H 1.09002 * 109.88456 * 298.39962 * 21 7 5 23 23 C 1.52997 * 109.88194 * 59.56524 * 21 7 5 24 24 C 1.50697 * 109.47057 * 269.99673 * 3 2 1 25 25 C 1.39877 * 126.04185 * 317.28260 * 24 3 2 26 26 N 1.30832 * 108.20433 * 179.97438 * 25 24 3 27 27 N 1.40092 * 108.20347 * 359.78073 * 26 25 24 28 28 C 1.46499 * 126.03409 * 180.23286 * 27 26 25 29 29 C 1.34949 * 107.92484 * 0.36347 * 27 26 25 30 30 H 1.08999 * 109.47437 * 300.00014 * 1 2 3 31 31 H 1.09003 * 109.47034 * 60.00164 * 1 2 3 32 32 H 1.09001 * 109.46939 * 179.97438 * 1 2 3 33 33 H 1.08993 * 110.36830 * 322.92643 * 8 7 5 34 34 H 1.09001 * 110.36842 * 85.13640 * 8 7 5 35 35 H 1.08999 * 110.99971 * 81.06101 * 9 8 7 36 36 H 1.08997 * 111.00686 * 204.88281 * 9 8 7 37 37 H 0.96998 * 120.00054 * 266.45203 * 12 10 9 38 38 H 0.97006 * 119.99962 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.46849 * 58.54686 * 23 21 7 40 40 H 1.09000 * 109.47596 * 178.54283 * 23 21 7 41 41 H 1.09000 * 109.47100 * 298.54858 * 23 21 7 42 42 H 1.08003 * 125.89452 * 359.93859 * 25 24 3 43 43 H 1.08999 * 109.46966 * 270.15023 * 28 27 26 44 44 H 1.08995 * 109.47371 * 30.15470 * 28 27 26 45 45 H 1.09006 * 109.46844 * 150.15016 * 28 27 26 46 46 H 1.07998 * 126.12135 * 179.90740 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3385 1.2639 0.7105 6 8 3.8757 0.1990 0.9303 7 7 3.9298 2.4103 1.1015 8 6 3.3421 3.7584 0.9992 9 6 4.5567 4.7194 0.9711 10 6 5.5284 4.0221 1.9595 11 1 5.2852 4.2845 2.9891 12 7 6.9182 4.3667 1.6499 13 6 7.4756 5.5019 2.1753 14 1 6.8905 6.1433 2.8176 15 6 8.7927 5.8281 1.8823 16 7 9.5059 5.0462 1.0999 17 14 9.5527 7.3769 2.5985 18 1 8.5490 8.0779 3.4389 19 1 10.7278 7.0127 3.4301 20 1 9.9854 8.2717 1.4952 21 6 5.2649 2.5226 1.7067 22 1 5.2921 1.9754 2.6490 23 6 6.3193 1.9661 0.7479 24 6 2.2145 1.7643 -1.4208 25 6 2.7084 0.9871 -2.4737 26 7 2.7413 1.7304 -3.5499 27 7 2.2639 3.0046 -3.2165 28 6 2.1299 4.1411 -4.1311 29 6 1.9521 3.0009 -1.9036 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.7635 3.8513 0.0802 34 1 2.7129 3.9647 1.8651 35 1 4.9886 4.7741 -0.0282 36 1 4.2790 5.7107 1.3293 37 1 7.4437 3.7909 1.0727 38 1 10.4261 5.2744 0.8948 39 1 6.2804 2.5148 -0.1931 40 1 7.3086 2.0762 1.1920 41 1 6.1201 0.9108 0.5616 42 1 3.0110 -0.0476 -2.4091 43 1 3.0538 4.7195 -4.1297 44 1 1.9317 3.7755 -5.1386 45 1 1.3044 4.7742 -3.8054 46 1 1.5590 3.8343 -1.3402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074772298.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:14 Heat of formation + Delta-G solvation = 36.768223 kcal Electronic energy + Delta-G solvation = -28562.143496 eV Core-core repulsion = 24683.228954 eV Total energy + Delta-G solvation = -3878.914542 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52450 -39.92419 -38.16219 -36.87174 -34.22291 -33.50289 -32.05596 -31.05719 -30.64886 -29.11181 -28.16389 -26.67662 -25.37471 -25.21590 -23.43534 -22.56529 -21.28369 -20.92540 -19.63502 -18.60932 -17.68620 -17.46830 -16.89169 -16.38542 -15.66040 -15.51644 -15.30621 -15.23860 -14.54989 -14.43154 -14.34770 -13.69778 -13.66962 -13.35397 -13.16233 -13.05126 -12.87673 -12.71968 -12.48112 -12.26947 -12.00817 -11.80388 -11.50294 -11.45580 -11.20217 -10.99232 -10.86281 -10.81979 -10.47044 -10.20480 -10.08245 -9.97077 -9.72325 -9.57191 -9.46332 -8.96939 -8.54957 -8.34139 -7.03476 -5.82865 -3.12767 1.66359 2.32198 2.53381 2.87107 2.92756 3.39334 3.44848 3.47496 3.92652 4.32939 4.51829 4.53784 4.71948 4.76062 4.88559 4.94119 5.01762 5.11348 5.17821 5.21757 5.25441 5.28628 5.36726 5.50926 5.52249 5.53507 5.61391 5.66084 5.72200 5.83071 6.05470 6.10359 6.23825 6.31887 6.47210 6.52873 6.58783 6.70144 6.75240 6.82265 6.98039 7.01332 7.53858 7.65122 7.79839 8.35332 8.42797 9.47222 10.02822 10.37658 11.39636 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.003584 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.049235 B = 7810.014083 C = 8685.135330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.161 3.839 4 H 0.083 0.917 5 C 0.536 3.464 6 O -0.521 6.521 7 N -0.604 5.604 8 C 0.092 3.908 9 C -0.151 4.151 10 C 0.174 3.826 11 H 0.063 0.937 12 N -0.717 5.717 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.292 1.292 21 C 0.131 3.869 22 H 0.073 0.927 23 C -0.157 4.157 24 C -0.263 4.263 25 C 0.083 3.917 26 N -0.296 5.296 27 N -0.372 5.372 28 C 0.100 3.900 29 C 0.072 3.928 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.391 0.609 38 H 0.256 0.744 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.186 0.814 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.706 -2.676 -6.116 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C 0.098 3.902 4 H 0.101 0.899 5 C 0.323 3.677 6 O -0.396 6.396 7 N -0.340 5.340 8 C -0.031 4.031 9 C -0.193 4.193 10 C 0.062 3.938 11 H 0.081 0.919 12 N -0.361 5.361 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.028 3.972 22 H 0.091 0.909 23 C -0.215 4.215 24 C -0.275 4.275 25 C -0.104 4.104 26 N -0.117 5.117 27 N -0.154 5.154 28 C -0.041 4.041 29 C -0.076 4.076 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.229 0.771 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.077 0.923 42 H 0.203 0.797 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -20.984 -3.176 -7.300 22.444 hybrid contribution 0.193 1.139 0.935 1.486 sum -20.791 -2.036 -6.366 21.839 Atomic orbital electron populations 1.22837 0.80879 1.02978 0.99872 1.88037 1.19418 1.24870 1.94652 1.19851 0.93402 0.86200 0.90744 0.89910 1.19739 0.86241 0.83027 0.78736 1.90695 1.64979 1.28895 1.55074 1.48442 1.18122 1.05959 1.61492 1.22510 0.97349 0.82659 1.00615 1.23521 0.95206 0.97938 1.02612 1.21162 0.86894 0.89321 0.96381 0.91930 1.42682 1.07092 1.27852 1.58459 1.19279 0.94805 0.99652 1.23770 0.91018 1.24755 0.96746 0.98953 1.00227 1.69671 1.09277 1.38453 1.40386 0.86118 0.79151 0.82676 0.78200 1.20519 1.21807 1.21899 1.21817 0.81118 0.98296 0.95997 0.90943 1.21979 0.99294 1.00803 0.99445 1.20094 1.15892 0.94728 0.96816 1.23732 0.97104 1.00179 0.89355 1.77440 1.21115 0.89476 1.23670 1.48505 1.49354 1.10266 1.07227 1.21899 1.03233 0.85187 0.93771 1.22285 1.00921 0.98731 0.85639 0.93994 0.93971 0.89290 0.91627 0.91641 0.90829 0.90675 0.77074 0.93416 0.92631 0.90233 0.92279 0.79748 0.90329 0.89237 0.89427 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.81 101.05 1.09 1.36 16 2 O -0.35 -4.68 9.74 -54.68 -0.53 -5.21 16 3 C 0.16 2.03 2.23 -29.04 -0.06 1.96 16 4 H 0.08 0.80 7.40 -51.93 -0.38 0.42 16 5 C 0.54 8.76 6.85 -10.98 -0.08 8.68 16 6 O -0.52 -10.52 15.66 -13.90 -0.22 -10.74 16 7 N -0.60 -9.40 3.08 -163.02 -0.50 -9.90 16 8 C 0.09 1.14 6.48 -2.53 -0.02 1.13 16 9 C -0.15 -2.38 6.77 -24.58 -0.17 -2.55 16 10 C 0.17 3.30 3.45 -66.09 -0.23 3.08 16 11 H 0.06 1.18 8.12 -51.93 -0.42 0.75 16 12 N -0.72 -17.24 5.02 -51.65 -0.26 -17.50 16 13 C -0.24 -6.49 9.98 -15.06 -0.15 -6.64 16 14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.53 13.06 55.49 0.72 -26.80 16 17 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 C 0.13 2.36 3.46 -66.95 -0.23 2.13 16 22 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 23 C -0.16 -3.07 7.94 37.16 0.29 -2.77 16 24 C -0.26 -3.23 4.79 -105.05 -0.50 -3.74 16 25 C 0.08 1.14 11.75 -17.36 -0.20 0.94 16 26 N -0.30 -4.13 12.58 30.63 0.39 -3.75 16 27 N -0.37 -4.10 4.01 -68.16 -0.27 -4.37 16 28 C 0.10 0.68 11.47 59.85 0.69 1.36 16 29 C 0.07 0.73 9.85 -17.22 -0.17 0.56 16 30 H 0.04 0.30 8.08 -51.93 -0.42 -0.11 16 31 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.67 4.36 -51.93 -0.23 0.44 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.39 10.05 4.94 -40.82 -0.20 9.85 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.05 1.13 8.05 -51.93 -0.42 0.71 16 40 H 0.08 1.67 6.73 -51.93 -0.35 1.32 16 41 H 0.06 1.17 6.91 -51.93 -0.36 0.81 16 42 H 0.19 2.45 8.06 -52.48 -0.42 2.03 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.18 1.14 6.95 -52.49 -0.36 0.77 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -34.92 374.39 -6.81 -41.73 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.92 Total: 9.04 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 0.17 Total: 5.12 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.07 Total: -62.33 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.75 Total: -15.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -34.92 -6.81 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074772298.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.497 kcal (2) G-P(sol) polarization free energy of solvation -34.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds