Wall clock time and date at job start Tue Mar 31 2020 14:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.63871 * 2 1 4 4 C 1.54324 * 110.87392 * 236.75309 * 2 1 3 5 5 N 1.47024 * 107.27069 * 219.37324 * 4 2 1 6 6 C 1.36935 * 125.64576 * 178.98556 * 5 4 2 7 7 H 1.08002 * 119.99400 * 179.97438 * 6 5 4 8 8 C 1.38810 * 120.00319 * 359.97335 * 6 5 4 9 9 N 1.31620 * 119.99892 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47670 * 59.99776 * 10 8 6 12 12 H 1.48501 * 109.46966 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47135 * 299.99645 * 10 8 6 14 14 C 1.47420 * 108.70131 * 358.93960 * 5 4 2 15 15 C 1.54908 * 104.83647 * 24.13010 * 14 5 4 16 16 H 1.08997 * 111.03868 * 81.08158 * 15 14 5 17 17 C 1.53006 * 111.00377 * 204.91690 * 15 14 5 18 18 N 1.46496 * 109.46995 * 287.19371 * 17 15 14 19 19 C 1.34775 * 119.99642 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00300 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99773 * 180.02562 * 19 18 17 22 22 O 1.42905 * 109.47264 * 179.97438 * 21 19 18 23 23 C 1.36232 * 117.00145 * 180.02562 * 22 21 19 24 24 C 1.40112 * 126.04937 * 359.68846 * 23 22 21 25 25 N 1.30870 * 108.35449 * 179.81866 * 24 23 22 26 26 N 1.40079 * 108.32044 * 0.44112 * 25 24 23 27 27 C 1.46501 * 126.07784 * 179.68157 * 26 25 24 28 28 C 1.35587 * 126.05065 * 180.02562 * 23 22 21 29 29 H 1.08994 * 109.47303 * 296.85955 * 1 2 3 30 30 H 1.08995 * 109.47126 * 56.86263 * 1 2 3 31 31 H 1.09001 * 109.46620 * 176.85817 * 1 2 3 32 32 H 1.09001 * 109.87949 * 338.78875 * 4 2 1 33 33 H 1.08998 * 109.88317 * 99.95353 * 4 2 1 34 34 H 0.96999 * 119.99824 * 179.97438 * 9 8 6 35 35 H 1.09004 * 110.36844 * 265.28621 * 14 5 4 36 36 H 1.09004 * 110.36642 * 142.96945 * 14 5 4 37 37 H 1.08998 * 109.46509 * 167.19673 * 17 15 14 38 38 H 1.08996 * 109.46884 * 47.19996 * 17 15 14 39 39 H 0.96998 * 120.00192 * 359.97438 * 18 17 15 40 40 H 1.09001 * 109.47438 * 59.99564 * 21 19 18 41 41 H 1.09004 * 109.47113 * 299.99819 * 21 19 18 42 42 H 1.07999 * 125.82404 * 0.02562 * 24 23 22 43 43 H 1.08999 * 109.47158 * 270.04204 * 27 26 25 44 44 H 1.09000 * 109.47027 * 30.04905 * 27 26 25 45 45 H 1.09007 * 109.47230 * 150.04052 * 27 26 25 46 46 H 1.07999 * 126.20497 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2495 -1.5470 -0.7353 6 6 4.0126 -2.3916 -1.4965 7 1 4.8556 -2.9028 -1.0554 8 6 3.7028 -2.5909 -2.8348 9 7 2.6751 -1.9683 -3.3721 10 14 4.7435 -3.7437 -3.8728 11 1 4.7036 -5.1082 -3.2884 12 1 4.2084 -3.7818 -5.2576 13 1 6.1462 -3.2568 -3.8980 14 6 3.4652 -1.2446 0.6913 15 6 2.0790 -0.7934 1.2152 16 1 1.4466 -1.6525 1.4388 17 6 2.2237 0.1112 2.4407 18 7 2.6289 -0.6931 3.5961 19 6 2.8177 -0.1046 4.7938 20 8 2.6526 1.0907 4.9149 21 6 3.2350 -0.9319 5.9823 22 8 3.3701 -0.0871 7.1270 23 6 3.7451 -0.6818 8.2939 24 6 4.0048 -2.0464 8.4776 25 7 4.3402 -2.2373 9.7281 26 7 4.2966 -1.0030 10.3891 27 6 4.5953 -0.7714 11.8045 28 6 3.9267 -0.0591 9.4845 29 1 -0.3633 0.4643 0.9167 30 1 -0.3633 0.5617 -0.8605 31 1 -0.3632 -1.0262 -0.0563 32 1 1.3191 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 2.4589 -2.1073 -4.3074 35 1 4.1930 -0.4409 0.8030 36 1 3.7993 -2.1363 1.2218 37 1 1.2692 0.5938 2.6506 38 1 2.9797 0.8713 2.2439 39 1 2.7605 -1.6492 3.4994 40 1 4.1898 -1.4140 5.7723 41 1 2.4795 -1.6926 6.1789 42 1 3.9424 -2.8098 7.7162 43 1 3.6820 -0.8752 12.3903 44 1 5.3303 -1.5008 12.1448 45 1 4.9960 0.2344 11.9314 46 1 3.8009 0.9959 9.6783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102285434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:03 Heat of formation + Delta-G solvation = 35.404748 kcal Electronic energy + Delta-G solvation = -26359.914354 eV Core-core repulsion = 22480.940687 eV Total energy + Delta-G solvation = -3878.973666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.58456 -39.87432 -38.30206 -37.64348 -34.69252 -33.32003 -32.97147 -30.77519 -30.68439 -29.62808 -27.87781 -26.77341 -25.91081 -24.93486 -22.84339 -21.74167 -21.36729 -20.55751 -20.01288 -19.19951 -18.42315 -17.26249 -16.70315 -16.62558 -16.26055 -15.70492 -15.55829 -15.15215 -14.69595 -14.61525 -14.49482 -14.04608 -13.78478 -13.40647 -13.30613 -13.07265 -12.94112 -12.85108 -12.53789 -12.50879 -11.84923 -11.70245 -11.41661 -11.37167 -11.22124 -11.03057 -10.81474 -10.78705 -10.20839 -10.04091 -10.00977 -9.91243 -9.81239 -9.68861 -9.55144 -9.02197 -8.60777 -8.20872 -6.83992 -5.71848 -3.05506 1.44937 1.97268 2.43446 2.54614 2.61425 3.39625 3.44038 3.45291 3.57275 4.32355 4.38592 4.48251 4.58456 4.71916 4.74880 4.81263 4.87326 4.97269 5.08343 5.15900 5.19455 5.31429 5.38122 5.52135 5.55541 5.74537 5.84734 5.88139 6.01254 6.08372 6.17528 6.27128 6.38634 6.47860 6.53509 6.55719 6.61688 6.74715 6.93061 7.08854 7.24475 7.46412 7.55612 7.63794 7.83031 8.15665 8.25456 9.21347 9.81729 10.47814 11.39596 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002067 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.943062 B =13541.616838 C =14656.935487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.068 0.932 4 C 0.184 3.816 5 N -0.606 5.606 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.285 1.285 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.141 3.859 15 C -0.113 4.113 16 H 0.081 0.919 17 C 0.134 3.866 18 N -0.721 5.721 19 C 0.514 3.486 20 O -0.523 6.523 21 C 0.047 3.953 22 O -0.278 6.278 23 C -0.028 4.028 24 C -0.005 4.005 25 N -0.273 5.273 26 N -0.371 5.371 27 C 0.108 3.892 28 C 0.024 3.976 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.253 0.747 35 H 0.019 0.981 36 H 0.036 0.964 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.187 0.813 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 2.209 25.812 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.332 5.332 6 C -0.358 4.358 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.015 3.985 15 C -0.133 4.133 16 H 0.099 0.901 17 C 0.011 3.989 18 N -0.374 5.374 19 C 0.298 3.702 20 O -0.398 6.398 21 C -0.032 4.032 22 O -0.189 6.189 23 C -0.082 4.082 24 C -0.191 4.191 25 N -0.097 5.097 26 N -0.160 5.160 27 C -0.033 4.033 28 C -0.120 4.120 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.204 0.796 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.337 2.425 26.604 26.716 hybrid contribution 0.400 -0.731 -1.383 1.615 sum 0.063 1.693 25.221 25.278 Atomic orbital electron populations 1.21692 0.95284 1.01622 1.00592 1.22446 0.95171 0.99161 0.96283 0.91401 1.21219 0.89040 0.93113 0.90710 1.44453 1.32432 1.51705 1.04651 1.18997 1.07505 1.17950 0.91324 0.90556 1.24805 0.98416 1.00337 0.96910 1.69951 1.28665 1.45604 1.12649 0.86202 0.79515 0.80478 0.79562 1.21201 1.21607 1.21204 1.21592 0.92981 0.97047 0.86881 1.22686 0.99458 0.98084 0.93044 0.90068 1.21434 1.00282 0.93743 0.83415 1.45910 1.70186 1.12447 1.08829 1.19977 0.78082 0.88380 0.83735 1.90742 1.49785 1.14912 1.84386 1.22379 1.02849 0.93105 0.84863 1.86103 1.85303 1.33355 1.14158 1.18673 1.10370 0.91307 0.87855 1.24091 1.03707 0.95906 0.95438 1.77273 1.22580 1.03424 1.06385 1.48257 1.54021 1.04561 1.09140 1.21856 1.02527 1.03422 0.75485 1.21545 1.06143 0.96290 0.87999 0.93636 0.92756 0.92710 0.93295 0.94047 0.93704 0.96316 0.94604 0.91460 0.91198 0.76267 0.89214 0.89343 0.79584 0.90628 0.89160 0.89235 0.79976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 9.17 37.16 0.34 -1.70 16 2 C -0.11 -1.96 3.01 -88.78 -0.27 -2.23 16 3 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 4 C 0.18 4.33 4.97 -3.06 -0.02 4.31 16 5 N -0.61 -15.05 3.39 -170.07 -0.58 -15.63 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 9 N -0.92 -26.76 10.31 55.49 0.57 -26.19 16 10 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.14 2.74 6.65 -2.53 -0.02 2.72 16 15 C -0.11 -1.79 2.49 -88.47 -0.22 -2.01 16 16 H 0.08 1.25 8.05 -51.93 -0.42 0.84 16 17 C 0.13 1.86 5.13 -4.04 -0.02 1.84 16 18 N -0.72 -8.42 5.50 -60.30 -0.33 -8.76 16 19 C 0.51 6.67 7.91 -10.98 -0.09 6.58 16 20 O -0.52 -9.16 16.50 -14.35 -0.24 -9.40 16 21 C 0.05 0.45 5.56 36.01 0.20 0.65 16 22 O -0.28 -3.43 9.76 -40.39 -0.39 -3.83 16 23 C -0.03 -0.30 6.96 -39.83 -0.28 -0.57 16 24 C -0.01 -0.05 11.07 -17.26 -0.19 -0.24 16 25 N -0.27 -2.91 12.57 30.68 0.39 -2.52 16 26 N -0.37 -3.20 4.04 -67.84 -0.27 -3.48 16 27 C 0.11 0.43 11.48 59.85 0.69 1.12 16 28 C 0.02 0.22 11.56 -16.71 -0.19 0.03 16 29 H 0.04 0.59 8.09 -51.93 -0.42 0.17 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 32 H 0.05 1.27 7.02 -51.93 -0.36 0.91 16 33 H 0.04 1.10 7.51 -51.93 -0.39 0.71 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.07 1.06 7.96 -51.93 -0.41 0.65 16 39 H 0.40 3.72 8.47 -40.82 -0.35 3.38 16 40 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.19 1.24 7.69 -52.49 -0.40 0.83 16 43 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -36.21 382.67 -7.77 -43.98 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -7.35 Total: -0.55 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.31 Total: 3.73 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.23 Total: -56.57 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.63 Total: -13.22 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.21 -7.77 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102285434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.384 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds