Wall clock time and date at job start Tue Mar 31 2020 14:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.63871 * 2 1 4 4 C 1.54324 * 110.87392 * 236.75309 * 2 1 3 5 5 N 1.47024 * 107.27069 * 219.37324 * 4 2 1 6 6 C 1.36935 * 125.64576 * 178.98556 * 5 4 2 7 7 H 1.08002 * 119.99400 * 179.97438 * 6 5 4 8 8 C 1.38810 * 120.00319 * 359.97335 * 6 5 4 9 9 N 1.31620 * 119.99892 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99982 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47670 * 59.99776 * 10 8 6 12 12 H 1.48501 * 109.46966 * 180.02562 * 10 8 6 13 13 H 1.48508 * 109.47135 * 299.99645 * 10 8 6 14 14 C 1.47420 * 108.70131 * 358.93960 * 5 4 2 15 15 C 1.54908 * 104.83647 * 24.13010 * 14 5 4 16 16 H 1.08997 * 111.03868 * 81.08158 * 15 14 5 17 17 C 1.53006 * 111.00377 * 204.91690 * 15 14 5 18 18 N 1.46496 * 109.46995 * 287.19371 * 17 15 14 19 19 C 1.34775 * 119.99642 * 180.02562 * 18 17 15 20 20 O 1.21279 * 120.00300 * 359.97438 * 19 18 17 21 21 C 1.50703 * 119.99773 * 180.02562 * 19 18 17 22 22 O 1.42905 * 109.47264 * 179.97438 * 21 19 18 23 23 C 1.36232 * 117.00145 * 180.02562 * 22 21 19 24 24 C 1.40112 * 126.04937 * 359.68846 * 23 22 21 25 25 N 1.30870 * 108.35449 * 179.81866 * 24 23 22 26 26 N 1.40079 * 108.32044 * 0.44112 * 25 24 23 27 27 C 1.46501 * 126.07784 * 179.68157 * 26 25 24 28 28 C 1.35587 * 126.05065 * 180.02562 * 23 22 21 29 29 H 1.08994 * 109.47303 * 296.85955 * 1 2 3 30 30 H 1.08995 * 109.47126 * 56.86263 * 1 2 3 31 31 H 1.09001 * 109.46620 * 176.85817 * 1 2 3 32 32 H 1.09001 * 109.87949 * 338.78875 * 4 2 1 33 33 H 1.08998 * 109.88317 * 99.95353 * 4 2 1 34 34 H 0.96999 * 119.99824 * 179.97438 * 9 8 6 35 35 H 1.09004 * 110.36844 * 265.28621 * 14 5 4 36 36 H 1.09004 * 110.36642 * 142.96945 * 14 5 4 37 37 H 1.08998 * 109.46509 * 167.19673 * 17 15 14 38 38 H 1.08996 * 109.46884 * 47.19996 * 17 15 14 39 39 H 0.96998 * 120.00192 * 359.97438 * 18 17 15 40 40 H 1.09001 * 109.47438 * 59.99564 * 21 19 18 41 41 H 1.09004 * 109.47113 * 299.99819 * 21 19 18 42 42 H 1.07999 * 125.82404 * 0.02562 * 24 23 22 43 43 H 1.08999 * 109.47158 * 270.04204 * 27 26 25 44 44 H 1.09000 * 109.47027 * 30.04905 * 27 26 25 45 45 H 1.09007 * 109.47230 * 150.04052 * 27 26 25 46 46 H 1.07999 * 126.20497 * 359.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0799 -0.7905 -1.2059 5 7 3.2495 -1.5470 -0.7353 6 6 4.0126 -2.3916 -1.4965 7 1 4.8556 -2.9028 -1.0554 8 6 3.7028 -2.5909 -2.8348 9 7 2.6751 -1.9683 -3.3721 10 14 4.7435 -3.7437 -3.8728 11 1 4.7036 -5.1082 -3.2884 12 1 4.2084 -3.7818 -5.2576 13 1 6.1462 -3.2568 -3.8980 14 6 3.4652 -1.2446 0.6913 15 6 2.0790 -0.7934 1.2152 16 1 1.4466 -1.6525 1.4388 17 6 2.2237 0.1112 2.4407 18 7 2.6289 -0.6931 3.5961 19 6 2.8177 -0.1046 4.7938 20 8 2.6526 1.0907 4.9149 21 6 3.2350 -0.9319 5.9823 22 8 3.3701 -0.0871 7.1270 23 6 3.7451 -0.6818 8.2939 24 6 4.0048 -2.0464 8.4776 25 7 4.3402 -2.2373 9.7281 26 7 4.2966 -1.0030 10.3891 27 6 4.5953 -0.7714 11.8045 28 6 3.9267 -0.0591 9.4845 29 1 -0.3633 0.4643 0.9167 30 1 -0.3633 0.5617 -0.8605 31 1 -0.3632 -1.0262 -0.0563 32 1 1.3191 -1.4773 -1.5770 33 1 2.3775 -0.1015 -1.9963 34 1 2.4589 -2.1073 -4.3074 35 1 4.1930 -0.4409 0.8030 36 1 3.7993 -2.1363 1.2218 37 1 1.2692 0.5938 2.6506 38 1 2.9797 0.8713 2.2439 39 1 2.7605 -1.6492 3.4994 40 1 4.1898 -1.4140 5.7723 41 1 2.4795 -1.6926 6.1789 42 1 3.9424 -2.8098 7.7162 43 1 3.6820 -0.8752 12.3903 44 1 5.3303 -1.5008 12.1448 45 1 4.9960 0.2344 11.9314 46 1 3.8009 0.9959 9.6783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102285434.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:02 Heat of formation + Delta-G solvation = 10.132943 kcal Electronic energy + Delta-G solvation = -26361.010221 eV Core-core repulsion = 22480.940687 eV Total energy + Delta-G solvation = -3880.069534 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23698 -40.91133 -39.64624 -38.63891 -36.03022 -34.66873 -33.85034 -32.52105 -31.63503 -30.70061 -28.88568 -27.71297 -27.28261 -26.36692 -24.39583 -22.52073 -22.10921 -21.59319 -21.53047 -20.60601 -19.10725 -18.85134 -18.07402 -17.41137 -17.21636 -16.75395 -16.39859 -16.32799 -16.02161 -15.64945 -15.40761 -15.25530 -15.21025 -14.58934 -14.42685 -14.25535 -14.10652 -13.50860 -13.42084 -13.39653 -13.22340 -13.19598 -13.07805 -12.83744 -12.63272 -12.41278 -12.08433 -11.95720 -11.81322 -11.71393 -11.53909 -11.38281 -11.34123 -10.85174 -10.67244 -10.43049 -10.09525 -8.89341 -8.86650 -7.82300 -5.17637 0.80807 1.39371 1.46960 1.49959 1.56086 1.56232 1.75810 1.84592 2.51241 2.77379 3.35485 3.62091 3.64551 3.80286 3.87350 3.90986 3.97101 3.98448 4.18269 4.24583 4.28389 4.40322 4.48790 4.52916 4.60277 4.63086 4.73978 4.76229 4.76894 4.84798 4.88773 5.00260 5.11634 5.18117 5.24872 5.36061 5.39770 5.49778 5.51021 5.74368 5.84463 5.99257 6.22880 6.36485 6.55518 6.61772 7.12995 7.20841 7.81203 8.45606 9.27626 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020227 B = 0.002067 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.943062 B =13541.616838 C =14656.935487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 H 0.072 0.928 4 C 0.192 3.808 5 N -0.629 5.629 6 C -0.241 4.241 7 H 0.084 0.916 8 C -0.069 4.069 9 N -0.951 5.951 10 Si 0.977 3.023 11 H -0.274 1.274 12 H -0.297 1.297 13 H -0.280 1.280 14 C 0.136 3.864 15 C -0.089 4.089 16 H 0.094 0.906 17 C 0.146 3.854 18 N -0.709 5.709 19 C 0.514 3.486 20 O -0.574 6.574 21 C 0.049 3.951 22 O -0.306 6.306 23 C -0.054 4.054 24 C -0.006 4.006 25 N -0.305 5.305 26 N -0.371 5.371 27 C 0.097 3.903 28 C 0.024 3.976 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.017 0.983 33 H -0.003 1.003 34 H 0.245 0.755 35 H 0.016 0.984 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.418 0.582 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.210 0.790 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 1.450 28.199 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.123 4.123 3 H 0.091 0.909 4 C 0.067 3.933 5 N -0.355 5.355 6 C -0.370 4.370 7 H 0.102 0.898 8 C -0.262 4.262 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.206 1.206 14 C 0.011 3.989 15 C -0.109 4.109 16 H 0.112 0.888 17 C 0.022 3.978 18 N -0.363 5.363 19 C 0.301 3.699 20 O -0.453 6.453 21 C -0.029 4.029 22 O -0.218 6.218 23 C -0.109 4.109 24 C -0.192 4.192 25 N -0.130 5.130 26 N -0.159 5.159 27 C -0.042 4.042 28 C -0.121 4.121 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.016 0.984 34 H 0.055 0.945 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.255 0.745 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.227 0.773 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.132 0.868 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.094 1.622 29.047 29.093 hybrid contribution 0.379 -0.454 -2.054 2.137 sum 0.285 1.168 26.993 27.020 Atomic orbital electron populations 1.21638 0.92988 1.01716 1.02142 1.22322 0.96978 0.98567 0.94389 0.90928 1.20970 0.88122 0.91951 0.92249 1.44788 1.32446 1.51375 1.06920 1.19432 1.07765 1.17857 0.91930 0.89830 1.25657 0.99881 1.02341 0.98304 1.70187 1.30337 1.47186 1.12308 0.85167 0.77949 0.78906 0.77394 1.20027 1.22311 1.20570 1.21793 0.95059 0.97661 0.84382 1.22472 0.97075 0.98373 0.92945 0.88827 1.21157 1.00416 0.93076 0.83161 1.45748 1.69491 1.13034 1.08013 1.20561 0.76847 0.87969 0.84561 1.90722 1.52135 1.17232 1.85192 1.22488 1.05034 0.92455 0.82909 1.86038 1.85884 1.34793 1.15098 1.18919 1.12069 0.92030 0.87844 1.24461 1.02911 0.96110 0.95675 1.77220 1.23874 1.04808 1.07099 1.48657 1.53070 1.03848 1.10350 1.22227 1.03480 1.05054 0.73434 1.22020 1.04875 0.97318 0.87876 0.90567 0.92903 0.93166 0.96518 0.98445 0.94539 0.96590 0.92913 0.90668 0.92464 0.74512 0.86686 0.86253 0.77301 0.89352 0.88750 0.86765 0.77953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.17 71.98 0.66 -3.01 16 2 C -0.10 -3.57 3.01 -9.60 -0.03 -3.60 16 3 H 0.07 2.46 8.04 -2.39 -0.02 2.44 16 4 C 0.19 9.32 4.97 86.73 0.43 9.76 16 5 N -0.63 -31.52 3.39 -691.99 -2.35 -33.87 16 6 C -0.24 -13.29 10.28 84.03 0.86 -12.42 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 8 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 9 N -0.95 -57.24 10.31 21.65 0.22 -57.02 16 10 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 C 0.14 5.10 6.65 86.86 0.58 5.68 16 15 C -0.09 -2.65 2.49 -9.40 -0.02 -2.67 16 16 H 0.09 2.62 8.05 -2.39 -0.02 2.60 16 17 C 0.15 3.71 5.13 86.38 0.44 4.15 16 18 N -0.71 -14.66 5.50 -463.07 -2.55 -17.21 16 19 C 0.51 12.29 7.91 87.66 0.69 12.99 16 20 O -0.57 -19.58 16.50 16.01 0.26 -19.32 16 21 C 0.05 0.82 5.56 71.24 0.40 1.22 16 22 O -0.31 -7.10 9.76 -77.17 -0.75 -7.86 16 23 C -0.05 -1.08 6.96 22.11 0.15 -0.93 16 24 C -0.01 -0.11 11.07 85.29 0.94 0.83 16 25 N -0.31 -6.08 12.57 -56.85 -0.71 -6.80 16 26 N -0.37 -5.78 4.04 -368.56 -1.49 -7.27 16 27 C 0.10 0.58 11.48 127.77 1.47 2.04 16 28 C 0.02 0.40 11.56 83.45 0.96 1.37 16 29 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 32 H 0.02 0.90 7.02 -2.39 -0.02 0.89 16 33 H 0.00 -0.15 7.51 -2.39 -0.02 -0.17 16 34 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.02 0.63 7.91 -2.38 -0.02 0.61 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 38 H 0.06 1.65 7.96 -2.39 -0.02 1.63 16 39 H 0.42 6.26 8.47 -92.71 -0.79 5.47 16 40 H 0.12 1.32 8.10 -2.39 -0.02 1.30 16 41 H 0.12 1.24 8.09 -2.38 -0.02 1.22 16 42 H 0.21 2.24 7.69 -2.91 -0.02 2.22 16 43 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 44 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 46 H 0.20 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -81.73 382.67 2.86 -78.87 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.19 Total: 10.97 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 8.01 Total: 11.96 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.88 Total: -122.17 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.49 Total: -27.18 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -81.73 2.86 -78.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102285434.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.998 kcal (2) G-P(sol) polarization free energy of solvation -81.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds