Wall clock time and date at job start Tue Mar 31 2020 14:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.88682 * 2 1 4 4 C 1.54915 * 111.00417 * 236.12918 * 2 1 3 5 5 N 1.47419 * 104.83123 * 204.87640 * 4 2 1 6 6 C 1.36936 * 125.64741 * 204.08824 * 5 4 2 7 7 H 1.08005 * 120.00220 * 179.74696 * 6 5 4 8 8 C 1.38813 * 120.00306 * 0.02695 * 6 5 4 9 9 N 1.31628 * 119.99511 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00428 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47759 * 89.99451 * 10 8 6 12 12 H 1.48501 * 109.47021 * 209.99922 * 10 8 6 13 13 H 1.48500 * 109.46905 * 329.99457 * 10 8 6 14 14 C 1.47024 * 108.70461 * 24.35140 * 5 4 2 15 15 C 1.54333 * 107.26455 * 358.58635 * 14 5 4 16 16 H 1.09000 * 110.51261 * 96.45166 * 15 14 5 17 17 C 1.52996 * 111.00051 * 219.59812 * 15 14 5 18 18 C 1.53000 * 109.47257 * 288.78194 * 17 15 14 19 19 N 1.46509 * 109.47136 * 179.97438 * 18 17 15 20 20 C 1.34772 * 119.99854 * 179.97438 * 19 18 17 21 21 O 1.21729 * 120.00058 * 354.59348 * 20 19 18 22 22 C 1.46378 * 119.99656 * 174.58585 * 20 19 18 23 23 C 1.36717 * 126.82810 * 4.93833 * 22 20 19 24 24 N 1.33220 * 107.96723 * 179.97438 * 23 22 20 25 25 C 1.31539 * 109.76073 * 359.97438 * 24 23 22 26 26 O 1.35204 * 125.49412 * 180.02562 * 25 24 23 27 27 N 1.34941 * 109.01271 * 359.72869 * 25 24 23 28 28 C 1.46502 * 126.54808 * 180.30664 * 27 25 24 29 29 H 1.09004 * 109.47227 * 182.42240 * 1 2 3 30 30 H 1.09005 * 109.47074 * 302.41946 * 1 2 3 31 31 H 1.08998 * 109.47938 * 62.42075 * 1 2 3 32 32 H 1.08997 * 110.37177 * 86.03361 * 4 2 1 33 33 H 1.08999 * 110.36428 * 323.71129 * 4 2 1 34 34 H 0.96995 * 119.99772 * 180.02562 * 9 8 6 35 35 H 1.08998 * 109.88058 * 118.13003 * 14 5 4 36 36 H 1.08999 * 109.87965 * 239.29343 * 14 5 4 37 37 H 1.09003 * 109.47296 * 48.78626 * 17 15 14 38 38 H 1.09003 * 109.47195 * 168.78215 * 17 15 14 39 39 H 1.08998 * 109.47245 * 299.99675 * 18 17 15 40 40 H 1.08993 * 109.47028 * 60.00457 * 18 17 15 41 41 H 0.96997 * 119.99752 * 359.97438 * 19 18 17 42 42 H 1.07997 * 126.01950 * 359.97438 * 23 22 20 43 43 H 0.96701 * 114.00084 * 89.97769 * 26 25 24 44 44 H 1.08998 * 109.47199 * 272.51320 * 28 27 25 45 45 H 1.09001 * 109.46911 * 32.50475 * 28 27 25 46 46 H 1.08999 * 109.47559 * 152.51058 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8060 -1.2008 5 7 3.4274 -1.2418 -0.7744 6 6 4.4641 -1.5647 -1.6087 7 1 5.4144 -1.8702 -1.1961 8 6 4.2957 -1.4938 -2.9848 9 7 3.1391 -1.1167 -3.4876 10 14 5.7096 -1.9349 -4.1229 11 1 5.6557 -3.3845 -4.4406 12 1 5.5987 -1.1486 -5.3778 13 1 6.9986 -1.6222 -3.4551 14 6 3.4666 -1.2785 0.6948 15 6 2.0870 -0.8078 1.2018 16 1 1.4482 -1.6635 1.4205 17 6 2.2317 0.0864 2.4347 18 6 2.6629 -0.7623 3.6325 19 7 2.8020 0.0941 4.8131 20 6 3.1752 -0.4400 5.9928 21 8 3.3010 -1.6458 6.1024 22 6 3.4293 0.4299 7.1423 23 6 3.2417 1.7828 7.2035 24 7 3.5898 2.1912 8.4228 25 6 3.9889 1.1627 9.1393 26 8 4.4122 1.2167 10.4222 27 7 3.9014 0.0442 8.3894 28 6 4.2429 -1.3169 8.8100 29 1 -0.3634 -1.0268 0.0434 30 1 -0.3633 0.5510 0.8675 31 1 -0.3635 0.4757 -0.9108 32 1 2.1552 -0.1712 -2.0840 33 1 1.4522 -1.6701 -1.4029 34 1 3.0213 -1.0675 -4.4491 35 1 3.6616 -2.2954 1.0352 36 1 4.2431 -0.6072 1.0617 37 1 2.9835 0.8518 2.2423 38 1 1.2757 0.5628 2.6523 39 1 1.9110 -1.5276 3.8251 40 1 3.6188 -1.2386 3.4150 41 1 2.6256 1.0455 4.7455 42 1 2.8759 2.4100 6.4041 43 1 3.7067 1.1054 11.0742 44 1 5.3029 -1.4973 8.6313 45 1 4.0288 -1.4334 9.8724 46 1 3.6513 -2.0328 8.2395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103316297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:34 Heat of formation + Delta-G solvation = 8.061367 kcal Electronic energy + Delta-G solvation = -26786.706263 eV Core-core repulsion = 22906.546899 eV Total energy + Delta-G solvation = -3880.159364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63619 -39.63175 -38.16933 -37.75422 -35.51674 -34.40613 -33.28801 -31.50375 -30.69942 -29.57825 -27.50626 -26.81932 -25.65893 -24.35952 -23.21212 -22.20472 -21.77709 -20.58430 -19.68965 -19.25616 -19.04017 -17.80087 -16.85756 -16.83036 -16.37667 -15.80300 -15.62233 -15.05080 -14.76696 -14.54976 -14.31613 -13.97022 -13.79704 -13.55318 -13.15244 -13.10895 -12.97762 -12.81715 -12.62846 -12.09541 -12.04167 -11.67812 -11.49981 -11.12978 -11.04075 -10.84915 -10.75214 -10.68763 -10.25581 -10.18904 -10.08442 -9.89234 -9.82021 -9.71315 -9.33205 -9.30724 -8.85153 -8.62758 -6.79776 -5.62982 -3.04349 0.80313 1.76810 2.22088 2.99107 3.04304 3.35110 3.41217 3.46230 3.48040 4.26832 4.34901 4.50881 4.61179 4.79590 4.87222 4.91257 5.07587 5.15754 5.26407 5.45588 5.50685 5.54857 5.57987 5.65631 5.75140 5.90428 5.94211 5.96132 6.03042 6.11899 6.21555 6.26588 6.28936 6.34462 6.56721 6.62802 6.69783 6.83937 7.02522 7.02737 7.20847 7.37445 7.57434 7.66057 7.89289 7.90865 8.39457 9.25114 9.86092 10.51397 11.40713 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021123 B = 0.002206 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.261896 B =12688.795428 C =13344.479563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.076 0.924 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.117 4.117 18 C 0.121 3.879 19 N -0.712 5.712 20 C 0.593 3.407 21 O -0.544 6.544 22 C -0.076 4.076 23 C 0.055 3.945 24 N -0.487 5.487 25 C 0.394 3.606 26 O -0.439 6.439 27 N -0.428 5.428 28 C 0.065 3.935 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.011 0.989 34 H 0.251 0.749 35 H 0.019 0.981 36 H 0.022 0.978 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.403 0.597 42 H 0.187 0.813 43 H 0.404 0.596 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.404 4.623 24.578 25.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.349 4.349 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.002 4.002 19 N -0.363 5.363 20 C 0.379 3.621 21 O -0.423 6.423 22 C -0.193 4.193 23 C -0.100 4.100 24 N -0.215 5.215 25 C 0.095 3.905 26 O -0.240 6.240 27 N -0.120 5.120 28 C -0.077 4.077 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.029 0.971 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.238 0.762 42 H 0.204 0.796 43 H 0.262 0.738 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.615 4.432 24.638 25.293 hybrid contribution 0.354 -0.807 -0.450 0.989 sum -3.261 3.626 24.188 24.675 Atomic orbital electron populations 1.21634 0.95754 1.01123 1.00587 1.22627 0.94363 0.99382 0.97049 0.91328 1.21969 0.84059 0.95872 0.94764 1.44506 1.10534 1.78932 0.99177 1.19085 0.90978 1.37597 0.87234 0.90579 1.24786 0.97294 1.02112 0.96628 1.69807 1.22388 1.53971 1.10985 0.86080 0.81253 0.77829 0.80398 1.21677 1.21676 1.20734 1.21377 0.93721 0.97181 0.86407 1.22141 0.98172 0.97608 0.93255 0.90911 1.21804 1.01689 0.98547 0.93488 1.21582 1.02538 0.93254 0.82811 1.45697 1.69245 1.12616 1.08760 1.16593 0.77234 0.86581 0.81645 1.90815 1.53049 1.14474 1.83928 1.20637 1.14364 0.95838 0.88429 1.22573 1.01283 0.90940 0.95231 1.70312 1.18376 1.27663 1.05181 1.20246 1.01604 0.81743 0.86910 1.84839 1.36232 1.93077 1.09828 1.45668 1.46627 1.09113 1.10605 1.22324 1.03605 0.79945 1.01851 0.93104 0.93826 0.92802 0.87760 0.97090 0.93798 0.96315 0.95970 0.90988 0.91363 0.91072 0.90727 0.76241 0.79594 0.73835 0.89894 0.89601 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.30 37.15 0.35 -1.62 16 2 C -0.11 -2.04 3.09 -88.48 -0.27 -2.31 16 3 H 0.07 1.22 8.05 -51.93 -0.42 0.81 16 4 C 0.16 3.77 5.36 -2.53 -0.01 3.76 16 5 N -0.61 -15.49 3.39 -170.07 -0.58 -16.07 16 6 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 8 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 9 N -0.92 -26.92 10.09 55.49 0.56 -26.36 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 C 0.14 2.84 6.25 -3.06 -0.02 2.82 16 15 C -0.09 -1.48 2.38 -88.79 -0.21 -1.69 16 16 H 0.07 1.15 8.02 -51.93 -0.42 0.73 16 17 C -0.12 -1.38 4.74 -26.73 -0.13 -1.51 16 18 C 0.12 1.41 5.57 -4.04 -0.02 1.38 16 19 N -0.71 -7.01 5.54 -61.71 -0.34 -7.35 16 20 C 0.59 6.97 7.77 -12.99 -0.10 6.87 16 21 O -0.54 -8.01 14.84 5.16 0.08 -7.94 16 22 C -0.08 -0.80 6.92 -81.97 -0.57 -1.37 16 23 C 0.05 0.51 11.35 -17.50 -0.20 0.32 16 24 N -0.49 -5.41 11.22 -14.62 -0.16 -5.57 16 25 C 0.39 3.87 9.01 -89.60 -0.81 3.07 16 26 O -0.44 -3.11 13.53 -17.31 -0.23 -3.34 16 27 N -0.43 -4.17 3.20 -122.12 -0.39 -4.56 16 28 C 0.06 0.47 10.75 59.85 0.64 1.12 16 29 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 2.82 5.87 -51.93 -0.31 2.52 16 33 H 0.01 0.28 8.04 -51.93 -0.42 -0.13 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 37 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 41 H 0.40 2.80 7.40 -40.82 -0.30 2.49 16 42 H 0.19 1.10 7.45 -52.49 -0.39 0.71 16 43 H 0.40 0.65 9.06 45.56 0.41 1.06 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.11 0.97 6.30 -51.93 -0.33 0.64 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -35.62 375.70 -8.34 -43.96 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.30 Total: 0.36 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.60 Total: 4.03 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.91 Total: -59.92 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.16 Total: -11.28 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.62 -8.34 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103316297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.019 kcal (2) G-P(sol) polarization free energy of solvation -35.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds