Wall clock time and date at job start Tue Mar 31 2020 14:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46676 * 90.00727 * 10 8 6 12 12 H 1.48502 * 109.46977 * 210.00025 * 10 8 6 13 13 H 1.48494 * 109.47494 * 330.00753 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21632 * 120.00217 * 0.02562 * 20 19 18 22 22 C 1.47247 * 119.99618 * 179.97438 * 20 19 18 23 23 C 1.36257 * 126.16517 * 179.97438 * 22 20 19 24 24 N 1.36332 * 106.88999 * 180.02562 * 23 22 20 25 25 C 1.46502 * 126.20148 * 180.02562 * 24 23 22 26 26 C 1.36166 * 107.60393 * 0.02562 * 24 23 22 27 27 O 1.35459 * 125.55732 * 179.97438 * 26 24 23 28 28 N 1.30707 * 108.89563 * 359.71965 * 26 24 23 29 29 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 30 30 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 31 31 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 32 32 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 33 33 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 36 36 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 37 37 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 38 38 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 39 39 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 40 40 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 41 41 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 42 42 H 1.07999 * 126.55232 * 0.04642 * 23 22 20 43 43 H 1.08997 * 109.46820 * 90.00059 * 25 24 23 44 44 H 1.08999 * 109.47075 * 210.00312 * 25 24 23 45 45 H 1.08998 * 109.47178 * 330.00347 * 25 24 23 46 46 H 0.96701 * 113.99682 * 89.99572 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 5.6572 -3.3841 -4.4402 12 1 5.5988 -1.1482 -5.3774 13 1 6.9988 -1.6208 -3.4545 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3968 -1.6322 6.0777 22 6 3.3154 0.4217 7.1792 23 6 3.6827 0.0173 8.4274 24 7 3.6859 1.1275 9.2186 25 6 4.0206 1.1732 10.6441 26 6 3.3216 2.1864 8.4438 27 8 3.2066 3.4685 8.8656 28 7 3.1061 1.7650 7.2254 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4756 -0.9109 32 1 2.1553 -0.1715 -2.0839 33 1 1.4522 -1.6703 -1.4026 34 1 3.0220 -1.0667 -4.4488 35 1 3.6616 -2.2956 1.0356 36 1 4.2431 -0.6073 1.0620 37 1 2.9836 0.8519 2.2422 38 1 1.2757 0.5631 2.6523 39 1 1.9108 -1.5272 3.8253 40 1 3.6187 -1.2383 3.4154 41 1 2.6254 1.0460 4.7454 42 1 3.9253 -0.9902 8.7317 43 1 5.0898 1.3505 10.7607 44 1 3.4643 1.9794 11.1223 45 1 3.7569 0.2237 11.1099 46 1 4.0210 3.9836 8.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103402042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:37 Heat of formation + Delta-G solvation = 6.488647 kcal Electronic energy + Delta-G solvation = -26542.861270 eV Core-core repulsion = 22662.633708 eV Total energy + Delta-G solvation = -3880.227563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.57062 -39.40420 -38.06340 -37.69480 -35.12934 -34.63002 -33.14573 -31.07151 -30.60154 -29.51645 -27.94599 -26.67174 -25.58458 -24.30351 -23.09679 -21.95449 -21.70632 -20.39772 -19.62971 -19.15384 -18.91168 -17.76797 -16.78462 -16.69583 -16.07930 -15.72843 -15.52338 -14.93925 -14.88485 -14.71434 -14.29430 -13.91079 -13.66036 -13.52471 -13.35716 -13.03880 -12.85650 -12.70976 -12.40475 -11.98133 -11.90906 -11.54364 -11.41723 -11.04006 -10.93869 -10.77513 -10.72697 -10.67823 -10.25987 -10.18236 -10.01986 -9.79738 -9.72678 -9.63182 -9.23851 -9.07738 -8.80072 -8.57104 -6.73213 -5.57161 -2.98204 1.16862 1.72422 1.97223 3.03729 3.36754 3.45071 3.49768 3.50051 3.51865 4.12936 4.21782 4.48500 4.55980 4.75686 4.78705 5.01428 5.08584 5.22695 5.40663 5.41950 5.54207 5.63339 5.65827 5.77759 5.82536 5.90187 6.05618 6.05699 6.09469 6.25334 6.35276 6.37874 6.44191 6.52700 6.66047 6.71178 6.79358 6.93224 7.03899 7.12628 7.20656 7.63144 7.64405 7.72287 7.95589 8.24019 8.45548 9.31042 9.92138 10.58113 11.46529 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.002124 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.042243 B =13180.009937 C =13678.747125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.159 3.841 5 N -0.606 5.606 6 C -0.218 4.218 7 H 0.076 0.924 8 C -0.014 4.014 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.139 3.861 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.116 4.116 18 C 0.118 3.882 19 N -0.712 5.712 20 C 0.601 3.399 21 O -0.543 6.543 22 C -0.044 4.044 23 C 0.043 3.957 24 N -0.465 5.465 25 C 0.068 3.932 26 C 0.377 3.623 27 O -0.440 6.440 28 N -0.454 5.454 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.011 0.989 34 H 0.251 0.749 35 H 0.020 0.980 36 H 0.023 0.977 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.408 0.592 42 H 0.197 0.803 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 8.209 28.724 29.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.135 4.135 3 H 0.086 0.914 4 C 0.034 3.966 5 N -0.332 5.332 6 C -0.347 4.347 7 H 0.094 0.906 8 C -0.209 4.209 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.013 3.987 15 C -0.111 4.111 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.362 5.362 20 C 0.386 3.614 21 O -0.421 6.421 22 C -0.173 4.173 23 C -0.094 4.094 24 N -0.159 5.159 25 C -0.075 4.075 26 C 0.076 3.924 27 O -0.240 6.240 28 N -0.184 5.184 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.041 0.959 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.243 0.757 42 H 0.213 0.787 43 H 0.100 0.900 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.600 7.809 28.140 29.247 hybrid contribution 1.367 0.002 0.173 1.378 sum -0.233 7.811 28.313 29.371 Atomic orbital electron populations 1.21632 0.95799 1.01103 1.00546 1.22628 0.94348 0.99383 0.97101 0.91374 1.21962 0.84063 0.95841 0.94752 1.44515 1.10521 1.78903 0.99234 1.19095 0.90989 1.37384 0.87237 0.90575 1.24784 0.97279 1.02248 0.96619 1.69809 1.22408 1.54073 1.10910 0.86082 0.81294 0.77802 0.80400 1.21707 1.21727 1.20758 1.21382 0.93810 0.97208 0.86275 1.22144 0.98089 0.97599 0.93309 0.90944 1.21786 1.01623 0.98483 0.93555 1.21539 1.02264 0.93301 0.83382 1.45873 1.68580 1.12859 1.08926 1.16789 0.76884 0.86074 0.81655 1.90822 1.51628 1.14634 1.84991 1.20490 1.11743 0.90287 0.94792 1.22682 1.04164 0.92396 0.90194 1.45836 1.50945 1.08097 1.11051 1.22161 1.02575 1.05460 0.77270 1.20276 1.04177 0.82741 0.85191 1.84900 1.39162 1.15611 1.84333 1.70872 1.20770 1.10385 1.16401 0.93109 0.93817 0.92859 0.87805 0.97108 0.93851 0.96248 0.95944 0.91155 0.91511 0.91362 0.90869 0.75699 0.78658 0.89989 0.88845 0.88899 0.74018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.30 37.16 0.35 -1.78 16 2 C -0.11 -2.19 3.09 -88.47 -0.27 -2.46 16 3 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 4 C 0.16 3.93 5.36 -2.53 -0.01 3.92 16 5 N -0.61 -16.05 3.39 -170.06 -0.58 -16.63 16 6 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 9 N -0.92 -27.50 10.09 55.49 0.56 -26.94 16 10 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 C 0.14 3.00 6.25 -3.06 -0.02 2.98 16 15 C -0.09 -1.61 2.38 -88.77 -0.21 -1.82 16 16 H 0.07 1.25 8.02 -51.93 -0.42 0.83 16 17 C -0.12 -1.63 4.74 -26.73 -0.13 -1.76 16 18 C 0.12 1.66 5.56 -4.04 -0.02 1.63 16 19 N -0.71 -9.38 5.55 -61.44 -0.34 -9.72 16 20 C 0.60 8.54 7.81 -12.60 -0.10 8.44 16 21 O -0.54 -9.17 16.88 5.25 0.09 -9.08 16 22 C -0.04 -0.53 6.97 -83.06 -0.58 -1.11 16 23 C 0.04 0.38 11.29 -16.26 -0.18 0.20 16 24 N -0.46 -3.24 3.16 -125.77 -0.40 -3.64 16 25 C 0.07 0.16 11.11 59.85 0.66 0.82 16 26 C 0.38 3.41 9.03 -89.17 -0.81 2.60 16 27 O -0.44 -2.83 13.55 -18.07 -0.24 -3.07 16 28 N -0.45 -5.34 11.03 -11.21 -0.12 -5.47 16 29 H 0.05 0.81 8.11 -51.93 -0.42 0.38 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 2.90 5.87 -51.93 -0.31 2.59 16 33 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 34 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 36 H 0.02 0.48 7.70 -51.93 -0.40 0.08 16 37 H 0.07 1.01 7.95 -51.92 -0.41 0.59 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 41 H 0.41 4.84 8.18 -40.82 -0.33 4.50 16 42 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 43 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 46 H 0.40 0.55 9.06 45.56 0.41 0.96 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -36.59 381.16 -8.35 -44.94 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.46 Total: 1.53 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.57 Total: 4.73 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: -0.88 Total: -62.40 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.16 Total: -12.15 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.59 -8.35 -44.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103402042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.425 kcal (2) G-P(sol) polarization free energy of solvation -36.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds