Wall clock time and date at job start Tue Mar 31 2020 14:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46676 * 90.00727 * 10 8 6 12 12 H 1.48502 * 109.46977 * 210.00025 * 10 8 6 13 13 H 1.48494 * 109.47494 * 330.00753 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21632 * 120.00217 * 0.02562 * 20 19 18 22 22 C 1.47247 * 119.99618 * 179.97438 * 20 19 18 23 23 C 1.36257 * 126.16517 * 179.97438 * 22 20 19 24 24 N 1.36332 * 106.88999 * 180.02562 * 23 22 20 25 25 C 1.46502 * 126.20148 * 180.02562 * 24 23 22 26 26 C 1.36166 * 107.60393 * 0.02562 * 24 23 22 27 27 O 1.35459 * 125.55732 * 179.97438 * 26 24 23 28 28 N 1.30707 * 108.89563 * 359.71965 * 26 24 23 29 29 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 30 30 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 31 31 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 32 32 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 33 33 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 34 34 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 35 35 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 36 36 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 37 37 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 38 38 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 39 39 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 40 40 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 41 41 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 42 42 H 1.07999 * 126.55232 * 0.04642 * 23 22 20 43 43 H 1.08997 * 109.46820 * 90.00059 * 25 24 23 44 44 H 1.08999 * 109.47075 * 210.00312 * 25 24 23 45 45 H 1.08998 * 109.47178 * 330.00347 * 25 24 23 46 46 H 0.96701 * 113.99682 * 89.99572 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 5.6572 -3.3841 -4.4402 12 1 5.5988 -1.1482 -5.3774 13 1 6.9988 -1.6208 -3.4545 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3968 -1.6322 6.0777 22 6 3.3154 0.4217 7.1792 23 6 3.6827 0.0173 8.4274 24 7 3.6859 1.1275 9.2186 25 6 4.0206 1.1732 10.6441 26 6 3.3216 2.1864 8.4438 27 8 3.2066 3.4685 8.8656 28 7 3.1061 1.7650 7.2254 29 1 -0.3634 -1.0267 0.0436 30 1 -0.3632 0.5511 0.8675 31 1 -0.3633 0.4756 -0.9109 32 1 2.1553 -0.1715 -2.0839 33 1 1.4522 -1.6703 -1.4026 34 1 3.0220 -1.0667 -4.4488 35 1 3.6616 -2.2956 1.0356 36 1 4.2431 -0.6073 1.0620 37 1 2.9836 0.8519 2.2422 38 1 1.2757 0.5631 2.6523 39 1 1.9108 -1.5272 3.8253 40 1 3.6187 -1.2383 3.4154 41 1 2.6254 1.0460 4.7454 42 1 3.9253 -0.9902 8.7317 43 1 5.0898 1.3505 10.7607 44 1 3.4643 1.9794 11.1223 45 1 3.7569 0.2237 11.1099 46 1 4.0210 3.9836 8.7848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103402042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:36 Heat of formation + Delta-G solvation = -22.714410 kcal Electronic energy + Delta-G solvation = -26544.127610 eV Core-core repulsion = 22662.633708 eV Total energy + Delta-G solvation = -3881.493902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.21682 -40.49838 -39.64911 -38.24507 -36.43435 -35.25398 -34.89978 -32.53322 -32.39900 -30.26065 -28.78898 -27.96716 -27.27750 -25.73247 -24.25128 -23.21272 -22.40378 -21.48235 -21.24994 -20.59060 -19.52783 -18.85223 -18.54283 -17.44685 -17.05288 -16.83723 -16.63792 -16.39878 -15.90446 -15.59271 -15.42615 -15.31612 -14.91384 -14.73112 -14.55564 -14.14602 -13.68920 -13.61748 -13.54270 -13.38791 -13.33116 -12.93065 -12.84117 -12.75532 -12.71742 -12.39036 -12.18575 -11.94064 -11.77079 -11.54513 -11.40003 -11.25017 -11.17127 -10.89674 -10.84008 -10.72370 -10.12468 -9.56438 -8.85789 -7.75720 -5.20243 0.46177 1.05246 1.40869 1.45318 1.47779 1.56547 2.15798 2.42801 2.50165 2.81588 3.32514 3.61649 3.72871 3.75425 3.81466 3.93250 4.08108 4.10127 4.28352 4.36841 4.39644 4.42846 4.53975 4.65963 4.71345 4.74519 4.81101 4.85556 4.86921 5.03535 5.05761 5.13832 5.20370 5.23930 5.30203 5.41820 5.45903 5.47284 5.56763 5.63246 5.78484 5.87386 6.34010 6.40409 6.62061 6.73017 7.13118 7.21670 7.81103 8.45547 9.25640 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021385 B = 0.002124 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.042243 B =13180.009937 C =13678.747125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.070 0.930 4 C 0.160 3.840 5 N -0.630 5.630 6 C -0.239 4.239 7 H 0.077 0.923 8 C -0.070 4.070 9 N -0.948 5.948 10 Si 0.981 3.019 11 H -0.287 1.287 12 H -0.291 1.291 13 H -0.270 1.270 14 C 0.134 3.866 15 C -0.077 4.077 16 H 0.079 0.921 17 C -0.100 4.100 18 C 0.125 3.875 19 N -0.706 5.706 20 C 0.598 3.402 21 O -0.579 6.579 22 C -0.081 4.081 23 C 0.059 3.941 24 N -0.455 5.455 25 C 0.060 3.940 26 C 0.379 3.621 27 O -0.442 6.442 28 N -0.487 5.487 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.069 0.931 33 H -0.017 1.017 34 H 0.247 0.753 35 H 0.014 0.986 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.415 0.585 42 H 0.216 0.784 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 9.346 31.488 32.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 H 0.088 0.912 4 C 0.035 3.965 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.095 0.905 8 C -0.262 4.262 9 N -0.598 5.598 10 Si 0.809 3.191 11 H -0.214 1.214 12 H -0.217 1.217 13 H -0.195 1.195 14 C 0.009 3.991 15 C -0.097 4.097 16 H 0.097 0.903 17 C -0.138 4.138 18 C 0.002 3.998 19 N -0.357 5.357 20 C 0.385 3.615 21 O -0.460 6.460 22 C -0.209 4.209 23 C -0.081 4.081 24 N -0.149 5.149 25 C -0.080 4.080 26 C 0.077 3.923 27 O -0.245 6.245 28 N -0.218 5.218 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.001 0.999 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.043 0.957 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.252 0.748 42 H 0.233 0.767 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -1.514 8.996 30.956 32.272 hybrid contribution 1.385 -0.307 -0.579 1.532 sum -0.128 8.688 30.378 31.596 Atomic orbital electron populations 1.21591 0.92978 1.01716 1.02126 1.22477 0.96548 0.98407 0.94697 0.91198 1.21779 0.83579 0.94826 0.96283 1.44868 1.10571 1.78938 1.01203 1.19457 0.91848 1.37392 0.88165 0.90534 1.25658 0.99900 1.02588 0.98084 1.70075 1.24141 1.54863 1.10740 0.85038 0.78682 0.77281 0.78090 1.21427 1.21697 1.19512 1.21572 0.96583 0.97075 0.83902 1.22042 0.95349 0.98189 0.94091 0.90250 1.21625 1.03125 0.97531 0.91559 1.21350 1.01243 0.93393 0.83846 1.45776 1.68324 1.13063 1.08498 1.17134 0.76014 0.85948 0.82370 1.90787 1.53394 1.16140 1.85650 1.20253 1.14961 0.90623 0.95052 1.22990 1.02064 0.93536 0.89470 1.46046 1.49490 1.06837 1.12486 1.22542 1.04041 1.06959 0.74500 1.20343 1.03183 0.83824 0.84945 1.84866 1.40988 1.14721 1.83960 1.70741 1.22332 1.10367 1.18400 0.93188 0.90307 0.93025 0.91316 0.99861 0.94361 0.96836 0.95731 0.91112 0.88777 0.91417 0.92778 0.74846 0.76717 0.88037 0.87802 0.87172 0.71414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 9.30 71.98 0.67 -3.12 16 2 C -0.10 -3.80 3.09 -9.40 -0.03 -3.83 16 3 H 0.07 2.60 8.05 -2.39 -0.02 2.58 16 4 C 0.16 8.21 5.36 86.86 0.47 8.67 16 5 N -0.63 -34.31 3.39 -691.95 -2.35 -36.66 16 6 C -0.24 -14.14 10.27 84.04 0.86 -13.27 16 7 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 8 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 9 N -0.95 -58.39 10.09 21.65 0.22 -58.17 16 10 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 11 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 12 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 C 0.13 5.84 6.25 86.73 0.54 6.39 16 15 C -0.08 -2.63 2.38 -9.60 -0.02 -2.65 16 16 H 0.08 2.62 8.02 -2.39 -0.02 2.60 16 17 C -0.10 -2.62 4.74 30.59 0.14 -2.48 16 18 C 0.13 3.41 5.56 86.38 0.48 3.89 16 19 N -0.71 -18.13 5.55 -466.53 -2.59 -20.72 16 20 C 0.60 16.92 7.81 86.61 0.68 17.59 16 21 O -0.58 -19.70 16.88 -4.13 -0.07 -19.77 16 22 C -0.08 -1.89 6.97 40.40 0.28 -1.60 16 23 C 0.06 0.96 11.29 83.53 0.94 1.90 16 24 N -0.46 -5.23 3.16 -662.75 -2.09 -7.32 16 25 C 0.06 0.08 11.11 127.77 1.42 1.49 16 26 C 0.38 6.12 9.03 179.84 1.62 7.75 16 27 O -0.44 -4.64 13.55 -87.57 -1.19 -5.82 16 28 N -0.49 -10.96 11.03 -303.15 -3.34 -14.31 16 29 H 0.05 1.50 8.11 -2.39 -0.02 1.49 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 4.01 5.87 -2.39 -0.01 4.00 16 33 H -0.02 -0.92 8.04 -2.39 -0.02 -0.94 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.02 1.06 7.70 -2.39 -0.02 1.05 16 37 H 0.07 1.89 7.95 -2.38 -0.02 1.87 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.68 7.69 -2.39 -0.02 1.67 16 41 H 0.41 9.40 8.18 -92.71 -0.76 8.64 16 42 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 44 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 46 H 0.43 0.07 9.06 -74.06 -0.67 -0.60 16 Total: -1.00 -82.57 381.16 -1.29 -83.86 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.43 Total: 12.48 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: 8.52 Total: 17.06 kcal Atomic # 7 Polarization: -127.02 SS G_CDS: -10.16 Total: -137.18 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.26 Total: -25.59 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -82.57 -1.29 -83.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103402042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.145 kcal (2) G-P(sol) polarization free energy of solvation -82.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds