Wall clock time and date at job start Tue Mar 31 2020 14:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34777 * 125.64528 * 178.90269 * 5 4 2 7 7 O 1.21282 * 119.99501 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00291 * 0.02824 * 6 5 4 9 9 O 1.42893 * 109.47246 * 179.97438 * 8 6 5 10 10 C 1.36231 * 117.00243 * 180.02562 * 9 8 6 11 11 C 1.40116 * 126.05071 * 0.02562 * 10 9 8 12 12 N 1.30867 * 108.35475 * 179.97438 * 11 10 9 13 13 N 1.40076 * 108.32295 * 0.02562 * 12 11 10 14 14 C 1.46500 * 126.07587 * 180.02562 * 13 12 11 15 15 C 1.35589 * 126.05066 * 179.71446 * 10 9 8 16 16 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 17 17 C 1.54915 * 104.83334 * 24.12789 * 16 5 4 18 18 H 1.09001 * 111.00387 * 81.05917 * 17 16 5 19 19 C 1.52992 * 111.00370 * 204.91773 * 17 16 5 20 20 N 1.46505 * 109.47185 * 287.19302 * 19 17 16 21 21 C 1.36934 * 120.00041 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99997 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99930 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00060 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00120 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47079 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47092 * 120.00190 * 25 23 21 28 28 H 1.48501 * 109.47215 * 240.00416 * 25 23 21 29 29 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 30 30 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 31 31 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 32 32 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 33 33 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 34 34 H 1.08998 * 109.47080 * 299.99828 * 8 6 5 35 35 H 1.09005 * 109.47183 * 59.99784 * 8 6 5 36 36 H 1.07997 * 125.82178 * 359.92956 * 11 10 9 37 37 H 1.09000 * 109.47259 * 89.97030 * 14 13 12 38 38 H 1.08993 * 109.47308 * 209.97181 * 14 13 12 39 39 H 1.09000 * 109.47291 * 329.97301 * 14 13 12 40 40 H 1.07999 * 126.21183 * 0.02562 * 15 10 9 41 41 H 1.08997 * 110.36855 * 142.96531 * 16 5 4 42 42 H 1.08999 * 110.36490 * 265.17846 * 16 5 4 43 43 H 1.08998 * 109.47538 * 47.19494 * 19 17 16 44 44 H 1.09002 * 109.47454 * 167.19693 * 19 17 16 45 45 H 0.96995 * 119.99498 * 0.02562 * 20 19 17 46 46 H 0.97000 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9913 -2.3848 -1.4894 7 8 4.9369 -2.9620 -0.9958 8 6 3.6516 -2.6000 -2.9417 9 8 4.5820 -3.5191 -3.5174 10 6 4.4154 -3.8243 -4.8346 11 6 3.4164 -3.3203 -5.6779 12 7 3.5796 -3.8411 -6.8673 13 7 4.6882 -4.6964 -6.8252 14 6 5.2165 -5.4797 -7.9448 15 6 5.1905 -4.6652 -5.5631 16 6 3.4632 -1.2499 0.6876 17 6 2.0789 -0.7955 1.2139 18 1 1.4450 -1.6536 1.4375 19 6 2.2278 0.1079 2.4396 20 7 2.6328 -0.6981 3.5940 21 6 2.8290 -0.1013 4.8107 22 1 2.6849 0.9636 4.9194 23 6 3.2122 -0.8650 5.9046 24 7 3.3874 -2.1628 5.7723 25 14 3.4793 -0.0510 7.5646 26 1 3.2187 1.4064 7.4489 27 1 2.5501 -0.6420 8.5609 28 1 4.8808 -0.2704 8.0038 29 1 -0.3634 -1.0271 0.0321 30 1 -0.3633 0.5414 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 1.3129 -1.4758 -1.5775 33 1 2.3715 -0.1026 -1.9988 34 1 2.6429 -3.0050 -3.0227 35 1 3.7051 -1.6492 -3.4721 36 1 2.6431 -2.6217 -5.3944 37 1 5.9609 -4.8910 -8.4809 38 1 5.6786 -6.3907 -7.5648 39 1 4.4029 -5.7401 -8.6219 40 1 6.0494 -5.2130 -5.2045 41 1 3.7959 -2.1427 1.2170 42 1 4.1946 -0.4493 0.7985 43 1 2.9854 0.8663 2.2422 44 1 1.2748 0.5929 2.6515 45 1 2.7626 -1.6543 3.4962 46 1 3.6556 -2.6964 6.5366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106589059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:00 Heat of formation + Delta-G solvation = 28.936134 kcal Electronic energy + Delta-G solvation = -26530.037961 eV Core-core repulsion = 22650.783794 eV Total energy + Delta-G solvation = -3879.254167 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58098 -40.19144 -38.52623 -37.37548 -34.68633 -33.31503 -32.96094 -31.43785 -30.60135 -29.47287 -28.00141 -26.78814 -26.37567 -25.13210 -23.10160 -21.71018 -21.35908 -21.08640 -20.03234 -19.31516 -18.41730 -17.21421 -16.89357 -16.62104 -16.24503 -15.78979 -15.59697 -15.15735 -14.69709 -14.59090 -14.40515 -14.08234 -13.82650 -13.64924 -13.19550 -13.17467 -13.08335 -12.90980 -12.75122 -12.56134 -12.27334 -12.18989 -11.99626 -11.39827 -11.35420 -11.09979 -11.02268 -10.87409 -10.62041 -10.47454 -10.38073 -9.98834 -9.80707 -9.78000 -9.66355 -8.87395 -8.61359 -8.19831 -6.91748 -5.74760 -3.04220 1.45368 1.97148 2.44044 2.54580 2.58233 3.44826 3.45439 3.50112 3.52758 4.22651 4.35710 4.43701 4.48037 4.57700 4.72620 4.73949 4.74962 4.78021 4.85177 4.92965 4.98034 5.16703 5.24503 5.34805 5.39115 5.46289 5.49237 5.58964 5.70796 5.78958 5.86964 5.97228 6.03070 6.11447 6.17642 6.23994 6.38207 6.40790 6.54641 6.69562 6.81937 7.11340 7.25148 7.49605 7.71422 8.14460 8.43371 9.54743 10.11626 10.45783 11.47930 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.002123 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.851096 B =13182.912016 C =14154.164971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.088 0.912 4 C 0.100 3.900 5 N -0.616 5.616 6 C 0.528 3.472 7 O -0.515 6.515 8 C 0.055 3.945 9 O -0.278 6.278 10 C -0.027 4.027 11 C -0.006 4.006 12 N -0.273 5.273 13 N -0.371 5.371 14 C 0.108 3.892 15 C 0.025 3.975 16 C 0.117 3.883 17 C -0.101 4.101 18 H 0.087 0.913 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.186 0.814 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.184 0.816 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.022 0.978 44 H 0.025 0.975 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.442 -1.667 -28.367 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.106 0.894 4 C -0.023 4.023 5 N -0.352 5.352 6 C 0.314 3.686 7 O -0.390 6.390 8 C -0.024 4.024 9 O -0.189 6.189 10 C -0.082 4.082 11 C -0.192 4.192 12 N -0.097 5.097 13 N -0.159 5.159 14 C -0.033 4.033 15 C -0.119 4.119 16 C -0.004 4.004 17 C -0.120 4.120 18 H 0.105 0.895 19 C 0.038 3.962 20 N -0.377 5.377 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.203 0.797 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.201 0.799 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.039 0.961 44 H 0.043 0.957 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.067 -2.127 -29.157 29.307 hybrid contribution 0.295 0.280 1.681 1.729 sum -1.772 -1.847 -27.476 27.595 Atomic orbital electron populations 1.21746 0.93657 1.02278 1.02084 1.22216 0.96416 0.99569 0.93506 0.89355 1.22221 0.87656 0.94758 0.97654 1.48432 1.30201 1.44333 1.12265 1.19588 0.82784 0.79199 0.86991 1.90781 1.27971 1.47084 1.73123 1.22314 0.93556 0.94151 0.92403 1.86113 1.51920 1.61656 1.19206 1.18679 0.99644 1.04204 0.85639 1.24054 1.00952 1.03134 0.91061 1.77253 1.03690 1.07694 1.21095 1.48250 1.23072 1.36097 1.08513 1.21857 0.99920 0.94480 0.87033 1.21565 1.01881 1.03606 0.84832 1.22382 0.97660 1.01876 0.78459 1.22684 0.95265 0.99299 0.94772 0.89479 1.20579 0.97301 0.92724 0.85624 1.42374 1.82618 1.07530 1.05197 1.19248 1.38718 0.92702 0.86539 0.91105 1.24756 1.02453 0.95594 0.98159 1.69672 1.53752 1.04379 1.30145 0.86123 0.77420 0.78294 0.84365 1.20568 1.21901 1.21864 0.92386 0.91559 0.92653 0.91261 0.91412 0.89482 0.89548 0.79706 0.90634 0.89196 0.89162 0.79908 0.89689 0.90911 0.96069 0.95726 0.78209 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.13 37.16 0.34 -0.95 16 2 C -0.10 -1.05 3.02 -88.78 -0.27 -1.32 16 3 H 0.09 0.91 8.04 -51.93 -0.42 0.50 16 4 C 0.10 0.96 6.08 -3.06 -0.02 0.94 16 5 N -0.62 -8.34 3.33 -170.52 -0.57 -8.91 16 6 C 0.53 7.89 7.93 -10.99 -0.09 7.81 16 7 O -0.52 -10.29 16.75 -14.35 -0.24 -10.53 16 8 C 0.05 0.59 4.75 36.00 0.17 0.76 16 9 O -0.28 -3.70 9.76 -40.39 -0.39 -4.09 16 10 C -0.03 -0.30 6.96 -39.82 -0.28 -0.58 16 11 C -0.01 -0.06 11.07 -17.26 -0.19 -0.25 16 12 N -0.27 -2.92 12.57 30.68 0.39 -2.53 16 13 N -0.37 -3.27 4.04 -67.85 -0.27 -3.55 16 14 C 0.11 0.45 11.48 59.85 0.69 1.13 16 15 C 0.03 0.24 11.56 -16.71 -0.19 0.05 16 16 C 0.12 1.91 6.32 -2.53 -0.02 1.89 16 17 C -0.10 -1.51 2.50 -88.47 -0.22 -1.73 16 18 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 19 C 0.17 3.14 5.72 -4.04 -0.02 3.11 16 20 N -0.73 -18.25 5.55 -59.91 -0.33 -18.58 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 25 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.55 7.82 -51.93 -0.41 0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.19 1.22 7.69 -52.49 -0.40 0.81 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.18 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.08 1.63 8.04 -51.93 -0.42 1.21 16 42 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 43 H 0.02 0.41 7.97 -51.93 -0.41 0.00 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.38 10.19 7.67 -40.82 -0.31 9.87 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -37.19 386.62 -7.63 -44.82 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -7.39 Total: 4.27 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -0.34 Total: 3.51 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: -0.06 Total: -61.31 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.63 Total: -14.62 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.19 -7.63 -44.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106589059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.758 kcal (2) G-P(sol) polarization free energy of solvation -37.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds