Wall clock time and date at job start Tue Mar 31 2020 14:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 110.78356 * 2 1 4 4 C 1.54327 * 110.72042 * 236.75772 * 2 1 3 5 5 N 1.47022 * 107.27336 * 219.44597 * 4 2 1 6 6 C 1.34777 * 125.64528 * 178.90269 * 5 4 2 7 7 O 1.21282 * 119.99501 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00291 * 0.02824 * 6 5 4 9 9 O 1.42893 * 109.47246 * 179.97438 * 8 6 5 10 10 C 1.36231 * 117.00243 * 180.02562 * 9 8 6 11 11 C 1.40116 * 126.05071 * 0.02562 * 10 9 8 12 12 N 1.30867 * 108.35475 * 179.97438 * 11 10 9 13 13 N 1.40076 * 108.32295 * 0.02562 * 12 11 10 14 14 C 1.46500 * 126.07587 * 180.02562 * 13 12 11 15 15 C 1.35589 * 126.05066 * 179.71446 * 10 9 8 16 16 C 1.47425 * 108.70334 * 358.94217 * 5 4 2 17 17 C 1.54915 * 104.83334 * 24.12789 * 16 5 4 18 18 H 1.09001 * 111.00387 * 81.05917 * 17 16 5 19 19 C 1.52992 * 111.00370 * 204.91773 * 17 16 5 20 20 N 1.46505 * 109.47185 * 287.19302 * 19 17 16 21 21 C 1.36934 * 120.00041 * 179.97438 * 20 19 17 22 22 H 1.08007 * 119.99997 * 0.02562 * 21 20 19 23 23 C 1.38808 * 119.99930 * 179.97438 * 21 20 19 24 24 N 1.31620 * 120.00060 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00120 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47079 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47092 * 120.00190 * 25 23 21 28 28 H 1.48501 * 109.47215 * 240.00416 * 25 23 21 29 29 H 1.08999 * 109.47239 * 181.78845 * 1 2 3 30 30 H 1.09007 * 109.46791 * 301.78830 * 1 2 3 31 31 H 1.08997 * 109.47298 * 61.78039 * 1 2 3 32 32 H 1.08997 * 109.87800 * 338.86780 * 4 2 1 33 33 H 1.09000 * 109.87987 * 99.87020 * 4 2 1 34 34 H 1.08998 * 109.47080 * 299.99828 * 8 6 5 35 35 H 1.09005 * 109.47183 * 59.99784 * 8 6 5 36 36 H 1.07997 * 125.82178 * 359.92956 * 11 10 9 37 37 H 1.09000 * 109.47259 * 89.97030 * 14 13 12 38 38 H 1.08993 * 109.47308 * 209.97181 * 14 13 12 39 39 H 1.09000 * 109.47291 * 329.97301 * 14 13 12 40 40 H 1.07999 * 126.21183 * 0.02562 * 15 10 9 41 41 H 1.08997 * 110.36855 * 142.96531 * 16 5 4 42 42 H 1.08999 * 110.36490 * 265.17846 * 16 5 4 43 43 H 1.08998 * 109.47538 * 47.19494 * 19 17 16 44 44 H 1.09002 * 109.47454 * 167.19693 * 19 17 16 45 45 H 0.96995 * 119.99498 * 0.02562 * 20 19 17 46 46 H 0.97000 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0190 0.0000 4 6 2.0760 -0.7913 -1.2072 5 7 3.2445 -1.5508 -0.7390 6 6 3.9913 -2.3848 -1.4894 7 8 4.9369 -2.9620 -0.9958 8 6 3.6516 -2.6000 -2.9417 9 8 4.5820 -3.5191 -3.5174 10 6 4.4154 -3.8243 -4.8346 11 6 3.4164 -3.3203 -5.6779 12 7 3.5796 -3.8411 -6.8673 13 7 4.6882 -4.6964 -6.8252 14 6 5.2165 -5.4797 -7.9448 15 6 5.1905 -4.6652 -5.5631 16 6 3.4632 -1.2499 0.6876 17 6 2.0789 -0.7955 1.2139 18 1 1.4450 -1.6536 1.4375 19 6 2.2278 0.1079 2.4396 20 7 2.6328 -0.6981 3.5940 21 6 2.8290 -0.1013 4.8107 22 1 2.6849 0.9636 4.9194 23 6 3.2122 -0.8650 5.9046 24 7 3.3874 -2.1628 5.7723 25 14 3.4793 -0.0510 7.5646 26 1 3.2187 1.4064 7.4489 27 1 2.5501 -0.6420 8.5609 28 1 4.8808 -0.2704 8.0038 29 1 -0.3634 -1.0271 0.0321 30 1 -0.3633 0.5414 0.8736 31 1 -0.3634 0.4859 -0.9055 32 1 1.3129 -1.4758 -1.5775 33 1 2.3715 -0.1026 -1.9988 34 1 2.6429 -3.0050 -3.0227 35 1 3.7051 -1.6492 -3.4721 36 1 2.6431 -2.6217 -5.3944 37 1 5.9609 -4.8910 -8.4809 38 1 5.6786 -6.3907 -7.5648 39 1 4.4029 -5.7401 -8.6219 40 1 6.0494 -5.2130 -5.2045 41 1 3.7959 -2.1427 1.2170 42 1 4.1946 -0.4493 0.7985 43 1 2.9854 0.8663 2.2422 44 1 1.2748 0.5929 2.6515 45 1 2.7626 -1.6543 3.4962 46 1 3.6556 -2.6964 6.5366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106589059.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:59 Heat of formation + Delta-G solvation = 2.626663 kcal Electronic energy + Delta-G solvation = -26531.178825 eV Core-core repulsion = 22650.783794 eV Total energy + Delta-G solvation = -3880.395031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26549 -41.28917 -39.51470 -38.45024 -36.46321 -34.30044 -33.86283 -33.03674 -31.54177 -30.69019 -29.08791 -27.34229 -27.21349 -26.70607 -24.82913 -22.67514 -22.21397 -21.95592 -21.20208 -20.34536 -19.17143 -19.10530 -17.95476 -17.63228 -17.23411 -16.68422 -16.49191 -16.39049 -15.99463 -15.44894 -15.32763 -15.25844 -15.14883 -14.92441 -14.77391 -14.23207 -13.99227 -13.50757 -13.47237 -13.41119 -13.37233 -13.33195 -13.13983 -12.91302 -12.79153 -12.42295 -12.14821 -12.08369 -11.93666 -11.78584 -11.73252 -11.57194 -11.34491 -10.98825 -10.92762 -10.44094 -9.73999 -8.99758 -8.92164 -7.94887 -5.24092 0.78808 1.30485 1.45914 1.46882 1.48250 1.58217 1.71784 1.73825 2.55759 2.61844 3.29846 3.39464 3.52692 3.67400 3.79022 3.82137 3.88192 4.07397 4.13693 4.19904 4.26604 4.29022 4.43442 4.47951 4.54313 4.56611 4.58078 4.70590 4.72749 4.74894 4.84110 4.87652 4.90911 5.08165 5.11463 5.21925 5.24699 5.28016 5.41156 5.50022 5.56858 5.97188 6.27002 6.33035 6.47958 6.58571 7.02914 7.32927 8.09536 8.30797 9.29037 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.002123 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.851096 B =13182.912016 C =14154.164971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 H 0.098 0.902 4 C 0.096 3.904 5 N -0.612 5.612 6 C 0.519 3.481 7 O -0.582 6.582 8 C 0.063 3.937 9 O -0.311 6.311 10 C -0.056 4.056 11 C -0.003 4.003 12 N -0.302 5.302 13 N -0.370 5.370 14 C 0.097 3.903 15 C 0.023 3.977 16 C 0.120 3.880 17 C -0.092 4.092 18 H 0.075 0.925 19 C 0.164 3.836 20 N -0.748 5.748 21 C -0.242 4.242 22 H 0.080 0.920 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.975 3.025 26 H -0.262 1.262 27 H -0.293 1.293 28 H -0.297 1.297 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.214 0.786 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.200 0.800 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.036 0.964 45 H 0.371 0.629 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 0.009 -30.924 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.117 0.883 4 C -0.024 4.024 5 N -0.346 5.346 6 C 0.308 3.692 7 O -0.461 6.461 8 C -0.015 4.015 9 O -0.223 6.223 10 C -0.110 4.110 11 C -0.188 4.188 12 N -0.126 5.126 13 N -0.158 5.158 14 C -0.042 4.042 15 C -0.122 4.122 16 C -0.003 4.003 17 C -0.112 4.112 18 H 0.094 0.906 19 C 0.038 3.962 20 N -0.390 5.390 21 C -0.373 4.373 22 H 0.098 0.902 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.804 3.196 26 H -0.186 1.186 27 H -0.220 1.220 28 H -0.224 1.224 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.231 0.769 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.217 0.783 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.042 0.958 44 H 0.053 0.947 45 H 0.202 0.798 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.721 -0.386 -31.787 32.006 hybrid contribution 0.809 -0.233 2.392 2.535 sum -2.912 -0.619 -29.395 29.546 Atomic orbital electron populations 1.21736 0.91990 1.02485 1.03188 1.22228 0.97664 0.99446 0.91257 0.88331 1.22577 0.86615 0.95502 0.97753 1.48479 1.31083 1.44220 1.10836 1.20513 0.81764 0.78122 0.88786 1.90746 1.30955 1.49700 1.74718 1.22394 0.94280 0.95787 0.89047 1.86049 1.53160 1.62606 1.20483 1.18939 1.01160 1.05782 0.85132 1.24469 1.01004 1.03059 0.90307 1.77205 1.04872 1.08762 1.21777 1.48643 1.22433 1.35685 1.09080 1.22228 1.00513 0.95167 0.86281 1.21997 1.02018 1.03075 0.85158 1.22100 0.98181 0.99484 0.80501 1.22499 0.94575 0.98955 0.95121 0.90632 1.20758 0.97269 0.92878 0.85288 1.42642 1.82707 1.07438 1.06260 1.19706 1.36846 0.93161 0.87629 0.90195 1.25622 1.03417 0.96204 1.01997 1.69845 1.55738 1.05930 1.30820 0.85051 0.76621 0.78225 0.79731 1.18625 1.22037 1.22415 0.92521 0.92708 0.89460 0.88452 0.87616 0.86368 0.86026 0.76908 0.89358 0.86939 0.88526 0.78292 0.94110 0.92011 0.95814 0.94658 0.79751 0.94135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.13 71.98 0.66 -1.36 16 2 C -0.09 -1.60 3.02 -9.60 -0.03 -1.63 16 3 H 0.10 1.67 8.04 -2.39 -0.02 1.65 16 4 C 0.10 1.46 6.08 86.73 0.53 1.99 16 5 N -0.61 -15.99 3.33 -811.79 -2.70 -18.69 16 6 C 0.52 15.42 7.93 87.66 0.69 16.11 16 7 O -0.58 -24.52 16.75 16.00 0.27 -24.25 16 8 C 0.06 1.21 4.75 71.23 0.34 1.55 16 9 O -0.31 -8.04 9.76 -77.15 -0.75 -8.80 16 10 C -0.06 -1.18 6.96 22.11 0.15 -1.03 16 11 C 0.00 -0.05 11.07 85.29 0.94 0.89 16 12 N -0.30 -5.89 12.57 -56.85 -0.71 -6.61 16 13 N -0.37 -5.94 4.04 -368.57 -1.49 -7.43 16 14 C 0.10 0.62 11.48 127.77 1.47 2.09 16 15 C 0.02 0.41 11.56 83.45 0.96 1.37 16 16 C 0.12 4.06 6.32 86.86 0.55 4.61 16 17 C -0.09 -2.74 2.50 -9.40 -0.02 -2.77 16 18 H 0.08 2.45 8.04 -2.39 -0.02 2.43 16 19 C 0.16 6.22 5.72 86.38 0.49 6.72 16 20 N -0.75 -38.26 5.55 -343.45 -1.91 -40.17 16 21 C -0.24 -13.60 9.99 84.03 0.84 -12.76 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 24 N -0.97 -61.50 13.06 21.65 0.28 -61.22 16 25 Si 0.97 46.99 29.55 68.60 2.03 49.01 16 26 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 29 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 1.02 7.82 -2.39 -0.02 1.00 16 33 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.12 1.51 8.10 -2.39 -0.02 1.49 16 35 H 0.12 1.46 8.10 -2.38 -0.02 1.44 16 36 H 0.21 2.01 7.69 -2.91 -0.02 1.99 16 37 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.04 1.71 8.04 -2.39 -0.02 1.69 16 42 H 0.06 2.18 7.91 -2.39 -0.02 2.16 16 43 H 0.02 0.90 7.97 -2.39 -0.02 0.88 16 44 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 46 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -86.20 386.62 3.32 -82.88 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.26 Total: 23.76 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 8.04 Total: 11.51 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -6.53 Total: -134.12 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.48 Total: -33.04 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.01 kcal Total: -86.20 3.32 -82.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106589059.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.504 kcal (2) G-P(sol) polarization free energy of solvation -86.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds