Wall clock time and date at job start Tue Mar 31 2020 13:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47108 * 2 1 4 4 H 1.08992 * 109.47190 * 301.81444 * 3 2 1 5 5 O 1.42904 * 109.46979 * 61.81658 * 3 2 1 6 6 C 1.42895 * 113.99921 * 256.13703 * 5 3 2 7 7 C 1.50705 * 109.46872 * 181.81482 * 3 2 1 8 8 O 1.21278 * 119.99761 * 244.99960 * 7 3 2 9 9 N 1.34773 * 120.00236 * 65.00206 * 7 3 2 10 10 C 1.46495 * 120.00019 * 179.97438 * 9 7 3 11 11 C 1.50705 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.40074 * 126.12438 * 259.69246 * 11 10 9 13 13 N 1.31013 * 108.25416 * 179.97438 * 12 11 10 14 14 N 1.39744 * 108.17851 * 0.52452 * 13 12 11 15 15 C 1.34647 * 126.12702 * 79.99556 * 11 10 9 16 16 C 1.51037 * 127.90819 * 359.45330 * 15 11 10 17 17 N 1.47491 * 106.99854 * 169.56064 * 16 15 11 18 18 C 1.36941 * 121.01496 * 222.97192 * 17 16 15 19 19 H 1.07997 * 119.99720 * 153.95068 * 18 17 16 20 20 C 1.38817 * 119.99792 * 333.94867 * 18 17 16 21 21 N 1.31615 * 119.99754 * 348.76119 * 20 18 17 22 22 Si 1.86797 * 119.99746 * 168.76268 * 20 18 17 23 23 H 1.48498 * 109.47335 * 94.96161 * 22 20 18 24 24 H 1.48501 * 109.47009 * 214.96673 * 22 20 18 25 25 H 1.48506 * 109.46976 * 334.96330 * 22 20 18 26 26 C 1.47088 * 117.97343 * 42.98085 * 17 16 15 27 27 C 1.46551 * 127.33014 * 179.23568 * 14 13 12 28 28 H 1.08998 * 109.47238 * 182.46760 * 1 2 3 29 29 H 1.09001 * 109.46966 * 62.46308 * 1 2 3 30 30 H 1.09003 * 109.47312 * 302.46199 * 1 2 3 31 31 H 1.09002 * 109.47366 * 119.99899 * 2 1 3 32 32 H 1.09006 * 109.47443 * 240.00319 * 2 1 3 33 33 H 1.09007 * 109.47068 * 62.21642 * 6 5 3 34 34 H 1.08997 * 109.47498 * 182.21848 * 6 5 3 35 35 H 1.09002 * 109.47054 * 302.22058 * 6 5 3 36 36 H 0.97010 * 119.99951 * 359.97438 * 9 7 3 37 37 H 1.08998 * 109.47305 * 299.99627 * 10 9 7 38 38 H 1.08999 * 109.47344 * 60.00218 * 10 9 7 39 39 H 1.08002 * 125.87318 * 0.08961 * 12 11 10 40 40 H 1.09003 * 109.94766 * 288.94142 * 16 15 11 41 41 H 1.09003 * 109.94620 * 50.18881 * 16 15 11 42 42 H 0.97003 * 119.99314 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.50752 * 176.51909 * 26 17 16 44 44 H 1.08998 * 109.51565 * 56.36756 * 26 17 16 45 45 H 1.09000 * 109.50587 * 281.40343 * 27 14 13 46 46 H 1.08999 * 109.50551 * 41.53937 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6503 1.9657 -0.8732 5 8 1.5988 2.1037 1.1876 6 6 0.5108 3.0066 0.9801 7 6 3.5463 1.4427 -0.0450 8 8 4.1809 1.8766 0.8930 9 7 4.1883 0.9608 -1.1276 10 6 5.6526 0.9615 -1.1715 11 6 6.1162 0.3752 -2.4802 12 6 6.5771 -0.9320 -2.6822 13 7 6.8866 -1.0669 -3.9481 14 7 6.6444 0.1514 -4.5884 15 6 6.1669 1.0158 -3.6634 16 6 5.7701 2.4417 -3.9644 17 7 6.2449 2.7427 -5.3280 18 6 6.8477 3.9377 -5.6176 19 1 7.5446 4.0056 -6.4399 20 6 6.5631 5.0616 -4.8542 21 7 5.5605 5.0415 -4.0018 22 14 7.6030 6.6025 -5.0369 23 1 6.9529 7.5272 -6.0000 24 1 7.7319 7.2720 -3.7177 25 1 8.9512 6.2333 -5.5384 26 6 6.0508 1.7203 -6.3675 27 6 6.8611 0.4708 -6.0022 28 1 -0.3633 -1.0267 0.0442 29 1 -0.3633 0.4751 -0.9113 30 1 -0.3634 0.5516 0.8671 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 -0.3558 2.4540 0.6170 34 1 0.2610 3.4969 1.9210 35 1 0.7973 3.7577 0.2439 36 1 3.6807 0.6134 -1.8778 37 1 6.0183 1.9844 -1.0823 38 1 6.0411 0.3635 -0.3472 39 1 6.6609 -1.6976 -1.9251 40 1 4.6860 2.5440 -3.9169 41 1 6.2400 3.1173 -3.2495 42 1 5.3619 5.8268 -3.4681 43 1 6.3928 2.1075 -7.3273 44 1 4.9934 1.4640 -6.4333 45 1 7.9208 0.6587 -6.1746 46 1 6.5341 -0.3665 -6.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128235857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:49 Heat of formation + Delta-G solvation = 18.594547 kcal Electronic energy + Delta-G solvation = -28088.276308 eV Core-core repulsion = 24208.573696 eV Total energy + Delta-G solvation = -3879.702611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.00678 -39.76040 -37.61718 -36.31964 -34.74393 -33.49610 -32.91354 -31.27027 -30.23593 -29.21615 -28.10245 -26.27671 -25.67512 -24.46676 -23.47177 -22.17632 -21.76989 -20.24034 -20.10600 -18.46888 -17.38719 -17.02933 -16.74524 -16.02530 -15.80094 -15.42120 -15.05937 -14.80799 -14.43556 -14.40393 -14.03702 -13.85431 -13.62652 -13.40282 -13.24641 -13.18831 -12.79001 -12.49386 -12.46867 -12.07990 -11.81449 -11.70450 -11.60164 -11.47141 -11.29174 -11.01696 -10.92748 -10.90063 -10.74110 -10.22163 -10.19160 -10.12280 -10.05018 -9.28840 -8.93799 -8.72542 -8.56721 -7.93357 -7.08118 -6.03767 -3.49433 2.40213 2.84296 2.86870 2.99754 3.26900 3.35174 3.36455 3.42217 4.07777 4.29180 4.71314 4.71461 4.92300 4.95090 5.05703 5.09117 5.18152 5.18824 5.30240 5.36459 5.38411 5.52846 5.54110 5.55917 5.59709 5.60147 5.70707 5.73574 5.85367 5.88796 6.04357 6.14719 6.20589 6.36368 6.39367 6.53869 6.71107 6.90064 6.99866 7.07829 7.14791 7.55451 7.58936 7.80312 8.08445 8.22163 8.49826 8.90277 9.51543 10.04748 11.07065 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.004159 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.347526 B = 6730.004296 C = 8387.122406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.072 3.928 4 H 0.089 0.911 5 O -0.357 6.357 6 C 0.024 3.976 7 C 0.508 3.492 8 O -0.526 6.526 9 N -0.717 5.717 10 C 0.211 3.789 11 C -0.288 4.288 12 C 0.057 3.943 13 N -0.318 5.318 14 N -0.358 5.358 15 C 0.119 3.881 16 C 0.231 3.769 17 N -0.597 5.597 18 C -0.264 4.264 19 H 0.073 0.927 20 C 0.010 3.990 21 N -0.905 5.905 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.129 3.871 27 C 0.113 3.887 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.398 0.602 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.176 0.824 40 H 0.056 0.944 41 H 0.111 0.889 42 H 0.260 0.740 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.076 0.924 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 -9.504 3.406 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C 0.010 3.990 4 H 0.107 0.893 5 O -0.274 6.274 6 C -0.072 4.072 7 C 0.292 3.708 8 O -0.402 6.402 9 N -0.370 5.370 10 C 0.088 3.912 11 C -0.301 4.301 12 C -0.130 4.130 13 N -0.138 5.138 14 N -0.139 5.139 15 C -0.012 4.012 16 C 0.104 3.896 17 N -0.319 5.319 18 C -0.393 4.393 19 H 0.091 0.909 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.212 1.212 25 H -0.203 1.203 26 C 0.001 3.999 27 C -0.010 4.010 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.193 0.807 40 H 0.073 0.927 41 H 0.128 0.872 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.915 -9.818 3.301 13.036 hybrid contribution -0.122 1.165 -0.153 1.181 sum -8.037 -8.653 3.147 12.222 Atomic orbital electron populations 1.21827 0.95002 1.02199 1.02086 1.21907 0.96965 0.94863 1.03513 1.22046 0.92104 0.94886 0.89946 0.89341 1.88007 1.51159 1.58655 1.29615 1.22999 0.89011 0.92584 1.02644 1.20506 0.89511 0.78003 0.82775 1.90702 1.68118 1.45249 1.36121 1.46165 1.07963 1.63648 1.19195 1.19305 0.78333 1.00757 0.92851 1.19433 1.19713 0.95699 0.95216 1.23679 0.99052 0.96408 0.93877 1.77170 1.25381 1.03950 1.07339 1.48499 1.49250 1.07453 1.08726 1.22623 0.93777 0.96046 0.88793 1.19944 0.97932 0.83613 0.88070 1.44184 1.69697 1.14998 1.03052 1.19170 1.18900 0.85039 1.16172 0.90948 1.25093 0.96789 0.97723 0.99364 1.69895 1.27824 1.29824 1.27341 0.86161 0.79887 0.82647 0.77382 1.21185 1.21246 1.20283 1.21293 0.96565 0.87918 0.94152 1.22562 1.02281 0.99777 0.76398 0.92233 0.92619 0.91939 0.90521 0.90376 0.93676 0.89423 0.93591 0.76781 0.90816 0.91306 0.80747 0.92657 0.87153 0.93029 0.89746 0.94608 0.90598 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.09 37.15 0.34 -0.91 16 2 C -0.13 -1.33 5.62 -26.73 -0.15 -1.48 16 3 C 0.07 0.90 2.71 -27.88 -0.08 0.83 16 4 H 0.09 0.98 7.64 -51.93 -0.40 0.59 16 5 O -0.36 -5.00 9.49 -55.09 -0.52 -5.52 16 6 C 0.02 0.25 10.34 101.05 1.04 1.29 16 7 C 0.51 8.09 7.18 -10.98 -0.08 8.01 16 8 O -0.53 -10.68 16.51 -14.30 -0.24 -10.91 16 9 N -0.72 -10.42 5.49 -61.47 -0.34 -10.76 16 10 C 0.21 3.41 5.95 -5.19 -0.03 3.38 16 11 C -0.29 -4.93 5.46 -105.20 -0.57 -5.50 16 12 C 0.06 0.91 11.97 -17.21 -0.21 0.70 16 13 N -0.32 -5.80 12.61 30.70 0.39 -5.41 16 14 N -0.36 -6.76 4.03 -56.89 -0.23 -6.99 16 15 C 0.12 2.32 6.71 -82.16 -0.55 1.77 16 16 C 0.23 5.12 5.07 -4.49 -0.02 5.10 16 17 N -0.60 -13.68 3.01 -172.92 -0.52 -14.20 16 18 C -0.26 -6.68 9.67 -15.06 -0.15 -6.82 16 19 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 20 C 0.01 0.25 5.09 -17.43 -0.09 0.16 16 21 N -0.91 -24.34 10.95 55.49 0.61 -23.73 16 22 Si 0.91 20.65 29.57 -169.99 -5.03 15.62 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.13 2.36 6.50 -3.55 -0.02 2.34 16 27 C 0.11 1.90 7.45 -3.84 -0.03 1.87 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 6.22 -51.93 -0.32 0.20 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.67 7.86 -51.93 -0.41 0.26 16 33 H 0.04 0.36 6.19 -51.92 -0.32 0.04 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.40 5.07 8.21 -40.82 -0.34 4.73 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.18 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.11 2.78 6.47 -51.93 -0.34 2.45 16 42 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.08 1.42 7.94 -51.93 -0.41 1.01 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -31.73 376.06 -7.95 -39.69 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.15 Total: 5.81 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: -0.59 Total: 10.75 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.09 Total: -61.09 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.76 Total: -16.44 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.73 -7.95 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128235857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.280 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds