Wall clock time and date at job start Tue Mar 31 2020 13:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47108 * 2 1 4 4 H 1.08992 * 109.47190 * 301.81444 * 3 2 1 5 5 O 1.42904 * 109.46979 * 61.81658 * 3 2 1 6 6 C 1.42895 * 113.99921 * 256.13703 * 5 3 2 7 7 C 1.50705 * 109.46872 * 181.81482 * 3 2 1 8 8 O 1.21278 * 119.99761 * 244.99960 * 7 3 2 9 9 N 1.34773 * 120.00236 * 65.00206 * 7 3 2 10 10 C 1.46495 * 120.00019 * 179.97438 * 9 7 3 11 11 C 1.50705 * 109.47119 * 180.02562 * 10 9 7 12 12 C 1.40074 * 126.12438 * 259.69246 * 11 10 9 13 13 N 1.31013 * 108.25416 * 179.97438 * 12 11 10 14 14 N 1.39744 * 108.17851 * 0.52452 * 13 12 11 15 15 C 1.34647 * 126.12702 * 79.99556 * 11 10 9 16 16 C 1.51037 * 127.90819 * 359.45330 * 15 11 10 17 17 N 1.47491 * 106.99854 * 169.56064 * 16 15 11 18 18 C 1.36941 * 121.01496 * 222.97192 * 17 16 15 19 19 H 1.07997 * 119.99720 * 153.95068 * 18 17 16 20 20 C 1.38817 * 119.99792 * 333.94867 * 18 17 16 21 21 N 1.31615 * 119.99754 * 348.76119 * 20 18 17 22 22 Si 1.86797 * 119.99746 * 168.76268 * 20 18 17 23 23 H 1.48498 * 109.47335 * 94.96161 * 22 20 18 24 24 H 1.48501 * 109.47009 * 214.96673 * 22 20 18 25 25 H 1.48506 * 109.46976 * 334.96330 * 22 20 18 26 26 C 1.47088 * 117.97343 * 42.98085 * 17 16 15 27 27 C 1.46551 * 127.33014 * 179.23568 * 14 13 12 28 28 H 1.08998 * 109.47238 * 182.46760 * 1 2 3 29 29 H 1.09001 * 109.46966 * 62.46308 * 1 2 3 30 30 H 1.09003 * 109.47312 * 302.46199 * 1 2 3 31 31 H 1.09002 * 109.47366 * 119.99899 * 2 1 3 32 32 H 1.09006 * 109.47443 * 240.00319 * 2 1 3 33 33 H 1.09007 * 109.47068 * 62.21642 * 6 5 3 34 34 H 1.08997 * 109.47498 * 182.21848 * 6 5 3 35 35 H 1.09002 * 109.47054 * 302.22058 * 6 5 3 36 36 H 0.97010 * 119.99951 * 359.97438 * 9 7 3 37 37 H 1.08998 * 109.47305 * 299.99627 * 10 9 7 38 38 H 1.08999 * 109.47344 * 60.00218 * 10 9 7 39 39 H 1.08002 * 125.87318 * 0.08961 * 12 11 10 40 40 H 1.09003 * 109.94766 * 288.94142 * 16 15 11 41 41 H 1.09003 * 109.94620 * 50.18881 * 16 15 11 42 42 H 0.97003 * 119.99314 * 179.97438 * 21 20 18 43 43 H 1.09000 * 109.50752 * 176.51909 * 26 17 16 44 44 H 1.08998 * 109.51565 * 56.36756 * 26 17 16 45 45 H 1.09000 * 109.50587 * 281.40343 * 27 14 13 46 46 H 1.08999 * 109.50551 * 41.53937 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6503 1.9657 -0.8732 5 8 1.5988 2.1037 1.1876 6 6 0.5108 3.0066 0.9801 7 6 3.5463 1.4427 -0.0450 8 8 4.1809 1.8766 0.8930 9 7 4.1883 0.9608 -1.1276 10 6 5.6526 0.9615 -1.1715 11 6 6.1162 0.3752 -2.4802 12 6 6.5771 -0.9320 -2.6822 13 7 6.8866 -1.0669 -3.9481 14 7 6.6444 0.1514 -4.5884 15 6 6.1669 1.0158 -3.6634 16 6 5.7701 2.4417 -3.9644 17 7 6.2449 2.7427 -5.3280 18 6 6.8477 3.9377 -5.6176 19 1 7.5446 4.0056 -6.4399 20 6 6.5631 5.0616 -4.8542 21 7 5.5605 5.0415 -4.0018 22 14 7.6030 6.6025 -5.0369 23 1 6.9529 7.5272 -6.0000 24 1 7.7319 7.2720 -3.7177 25 1 8.9512 6.2333 -5.5384 26 6 6.0508 1.7203 -6.3675 27 6 6.8611 0.4708 -6.0022 28 1 -0.3633 -1.0267 0.0442 29 1 -0.3633 0.4751 -0.9113 30 1 -0.3634 0.5516 0.8671 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 -0.3558 2.4540 0.6170 34 1 0.2610 3.4969 1.9210 35 1 0.7973 3.7577 0.2439 36 1 3.6807 0.6134 -1.8778 37 1 6.0183 1.9844 -1.0823 38 1 6.0411 0.3635 -0.3472 39 1 6.6609 -1.6976 -1.9251 40 1 4.6860 2.5440 -3.9169 41 1 6.2400 3.1173 -3.2495 42 1 5.3619 5.8268 -3.4681 43 1 6.3928 2.1075 -7.3273 44 1 4.9934 1.4640 -6.4333 45 1 7.9208 0.6587 -6.1746 46 1 6.5341 -0.3665 -6.6187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128235857.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:48 Heat of formation + Delta-G solvation = -2.521004 kcal Electronic energy + Delta-G solvation = -28089.191947 eV Core-core repulsion = 24208.573696 eV Total energy + Delta-G solvation = -3880.618250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.43141 -40.95974 -38.70469 -37.95548 -36.12837 -34.72050 -34.20114 -32.84427 -31.81876 -30.53214 -29.15366 -27.81206 -26.90934 -25.74558 -25.05863 -23.33980 -23.00893 -21.60748 -21.37684 -19.99670 -18.60781 -18.54234 -18.06628 -17.46033 -16.97550 -16.69245 -16.53328 -16.22851 -15.77916 -15.60152 -15.42313 -15.17726 -14.96461 -14.84156 -14.71332 -14.12197 -14.08919 -13.92827 -13.41139 -13.33587 -13.11104 -12.97677 -12.92004 -12.74780 -12.64184 -12.57944 -12.33783 -12.27606 -12.05285 -11.91128 -11.71393 -11.61198 -11.14165 -10.79467 -10.40730 -10.06232 -10.04466 -9.37988 -8.92452 -7.99243 -5.45604 0.92952 1.44826 1.48205 1.54796 1.56898 1.61418 1.64134 2.25249 2.44232 3.06417 3.21575 3.43342 3.60766 3.70338 3.83771 3.86073 3.99013 4.14553 4.19644 4.24647 4.35557 4.38124 4.43843 4.47465 4.53370 4.60537 4.76492 4.79280 4.82872 4.86118 4.88739 4.94021 5.02975 5.08637 5.17396 5.24494 5.38489 5.39731 5.43831 5.57817 5.75775 6.07722 6.09643 6.21306 6.60625 6.80769 6.99494 7.25815 7.64805 8.16358 9.09769 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.004159 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.347526 B = 6730.004296 C = 8387.122406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.075 3.925 4 H 0.104 0.896 5 O -0.386 6.386 6 C 0.018 3.982 7 C 0.502 3.498 8 O -0.577 6.577 9 N -0.705 5.705 10 C 0.217 3.783 11 C -0.275 4.275 12 C 0.068 3.932 13 N -0.326 5.326 14 N -0.367 5.367 15 C 0.097 3.903 16 C 0.250 3.750 17 N -0.616 5.616 18 C -0.268 4.268 19 H 0.078 0.922 20 C -0.041 4.041 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.282 1.282 24 H -0.297 1.297 25 H -0.270 1.270 26 C 0.129 3.871 27 C 0.117 3.883 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.409 0.591 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.215 0.785 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.252 0.748 43 H 0.099 0.901 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.454 -11.500 2.497 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.013 3.987 4 H 0.121 0.879 5 O -0.305 6.305 6 C -0.077 4.077 7 C 0.289 3.711 8 O -0.456 6.456 9 N -0.358 5.358 10 C 0.093 3.907 11 C -0.287 4.287 12 C -0.118 4.118 13 N -0.146 5.146 14 N -0.148 5.148 15 C -0.035 4.035 16 C 0.123 3.877 17 N -0.340 5.340 18 C -0.397 4.397 19 H 0.096 0.904 20 C -0.237 4.237 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.195 1.195 26 C 0.002 3.998 27 C -0.006 4.006 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.245 0.755 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.231 0.769 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.472 -11.851 2.327 14.753 hybrid contribution 0.056 1.735 0.120 1.740 sum -8.416 -10.116 2.447 13.385 Atomic orbital electron populations 1.21814 0.93328 1.03200 1.02451 1.21897 0.98332 0.92637 1.03747 1.22144 0.89395 0.96904 0.90210 0.87858 1.87967 1.52489 1.59450 1.30553 1.23194 0.88830 0.92369 1.03340 1.21250 0.91126 0.76720 0.82008 1.90670 1.69467 1.47524 1.37953 1.46031 1.07377 1.63038 1.19311 1.19147 0.79363 0.99137 0.93078 1.19502 1.18626 0.96109 0.94471 1.24245 0.97218 0.96433 0.93929 1.77169 1.25753 1.03498 1.08211 1.48684 1.49390 1.07490 1.09241 1.22242 0.95970 0.95096 0.90193 1.19371 0.96361 0.84712 0.87299 1.44413 1.69834 1.15367 1.04360 1.19500 1.18618 0.85920 1.15689 0.90397 1.25759 0.97942 1.00278 0.99696 1.70049 1.29371 1.29947 1.28365 0.85275 0.78911 0.79749 0.76616 1.20828 1.22383 1.19453 1.21456 0.97336 0.87448 0.93580 1.22557 1.01953 0.99949 0.76138 0.90861 0.91563 0.92331 0.91541 0.88856 0.91214 0.88385 0.94094 0.75463 0.94001 0.89862 0.76852 0.94559 0.91031 0.93870 0.88296 0.93988 0.90623 0.86947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.09 71.98 0.65 -1.42 16 2 C -0.13 -2.31 5.62 30.59 0.17 -2.14 16 3 C 0.07 1.84 2.71 29.85 0.08 1.92 16 4 H 0.10 2.19 7.64 -2.39 -0.02 2.18 16 5 O -0.39 -10.76 9.49 -129.99 -1.23 -11.99 16 6 C 0.02 0.36 10.34 113.37 1.17 1.53 16 7 C 0.50 16.23 7.18 87.66 0.63 16.86 16 8 O -0.58 -24.23 16.51 15.97 0.26 -23.97 16 9 N -0.70 -20.42 5.49 -466.80 -2.56 -22.98 16 10 C 0.22 7.04 5.95 85.64 0.51 7.55 16 11 C -0.27 -9.12 5.46 -20.24 -0.11 -9.23 16 12 C 0.07 2.00 11.97 85.26 1.02 3.02 16 13 N -0.33 -10.99 12.61 -56.79 -0.72 -11.71 16 14 N -0.37 -13.20 4.03 -333.92 -1.35 -14.55 16 15 C 0.10 3.73 6.71 41.31 0.28 4.00 16 16 C 0.25 11.39 5.07 85.55 0.43 11.83 16 17 N -0.62 -28.42 3.01 -701.01 -2.11 -30.53 16 18 C -0.27 -13.63 9.67 84.03 0.81 -12.81 16 19 H 0.08 3.79 7.85 -2.91 -0.02 3.77 16 20 C -0.04 -2.14 5.09 84.86 0.43 -1.71 16 21 N -0.93 -51.95 10.95 21.65 0.24 -51.71 16 22 Si 0.97 43.12 29.57 68.60 2.03 45.15 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.30 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.13 4.54 6.50 86.38 0.56 5.11 16 27 C 0.12 3.65 7.45 86.48 0.64 4.30 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.86 6.22 -2.39 -0.01 0.85 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.38 7.86 -2.38 -0.02 1.36 16 33 H 0.07 1.00 6.19 -2.38 -0.01 0.99 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 0.83 8.09 -2.39 -0.02 0.81 16 36 H 0.41 10.05 8.21 -92.70 -0.76 9.28 16 37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.22 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.07 3.81 6.47 -2.39 -0.02 3.80 16 42 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 43 H 0.10 3.16 7.94 -2.39 -0.02 3.14 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -70.37 376.06 2.08 -68.29 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.23 Total: 25.19 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 7.29 Total: 28.80 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -6.50 Total: -131.48 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.97 Total: -35.96 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.37 2.08 -68.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128235857.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.771 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds