Wall clock time and date at job start Tue Mar 31 2020 13:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47101 * 2 1 4 4 H 1.08999 * 109.47095 * 55.00246 * 3 2 1 5 5 O 1.42899 * 109.46917 * 294.99933 * 3 2 1 6 6 C 1.42896 * 113.99833 * 149.99972 * 5 3 2 7 7 C 1.50700 * 109.47056 * 174.99826 * 3 2 1 8 8 O 1.21280 * 119.99533 * 114.99557 * 7 3 2 9 9 N 1.34775 * 120.00260 * 295.00200 * 7 3 2 10 10 C 1.46494 * 119.99930 * 180.02562 * 9 7 3 11 11 C 1.50697 * 109.47229 * 179.97438 * 10 9 7 12 12 C 1.40073 * 126.12726 * 259.68983 * 11 10 9 13 13 N 1.31010 * 108.25695 * 179.84817 * 12 11 10 14 14 N 1.39741 * 108.17563 * 0.60861 * 13 12 11 15 15 C 1.34641 * 126.12499 * 79.99739 * 11 10 9 16 16 C 1.51036 * 127.91197 * 359.65470 * 15 11 10 17 17 N 1.47504 * 107.00208 * 169.52707 * 16 15 11 18 18 C 1.36936 * 121.01201 * 222.90210 * 17 16 15 19 19 H 1.08004 * 120.00163 * 155.91380 * 18 17 16 20 20 C 1.38810 * 120.00079 * 335.91322 * 18 17 16 21 21 N 1.31619 * 120.00137 * 344.46338 * 20 18 17 22 22 Si 1.86805 * 120.00174 * 164.46311 * 20 18 17 23 23 H 1.48502 * 109.47014 * 60.00099 * 22 20 18 24 24 H 1.48501 * 109.47205 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47152 * 300.00199 * 22 20 18 26 26 C 1.47084 * 117.97761 * 42.92652 * 17 16 15 27 27 C 1.46553 * 127.32104 * 179.18230 * 14 13 12 28 28 H 1.08997 * 109.47288 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47062 * 300.00169 * 1 2 3 30 30 H 1.08997 * 109.47403 * 59.99985 * 1 2 3 31 31 H 1.08998 * 109.46823 * 239.99924 * 2 1 3 32 32 H 1.08996 * 109.47012 * 119.99643 * 2 1 3 33 33 H 1.08997 * 109.47347 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47042 * 59.99992 * 6 5 3 35 35 H 1.09005 * 109.47550 * 300.00006 * 6 5 3 36 36 H 0.96998 * 120.00032 * 359.97438 * 9 7 3 37 37 H 1.09004 * 109.47103 * 299.99539 * 10 9 7 38 38 H 1.08993 * 109.47556 * 59.99673 * 10 9 7 39 39 H 1.08001 * 125.86567 * 0.03865 * 12 11 10 40 40 H 1.09002 * 109.95124 * 288.90206 * 16 15 11 41 41 H 1.09002 * 109.94701 * 50.15561 * 16 15 11 42 42 H 0.96998 * 120.00352 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.51640 * 56.34237 * 26 17 16 44 44 H 1.08995 * 109.51472 * 176.49642 * 26 17 16 45 45 H 1.08998 * 109.51461 * 41.59949 * 27 14 13 46 46 H 1.08998 * 109.51000 * 281.45424 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 1.4559 3.4902 -1.1003 7 6 3.5419 1.4443 0.1239 8 8 4.2250 1.8610 -0.7875 9 7 4.1260 0.9828 1.2474 10 6 5.5860 0.9851 1.3679 11 6 5.9801 0.4234 2.7096 12 6 6.3536 1.1647 3.8379 13 7 6.6206 0.3272 4.8093 14 7 6.4395 -0.9718 4.3271 15 6 6.0420 -0.8812 3.0368 16 6 5.7318 -2.0730 2.1624 17 7 6.1905 -3.2720 2.8889 18 6 6.8614 -4.2753 2.2420 19 1 7.5160 -4.9319 2.7960 20 6 6.7001 -4.4486 0.8743 21 7 5.6950 -3.8703 0.2516 22 14 7.9097 -5.5025 -0.0828 23 1 7.8970 -6.8855 0.4580 24 1 7.5193 -5.5270 -1.5154 25 1 9.2746 -4.9323 0.0482 26 6 5.9048 -3.3574 4.3292 27 6 6.6398 -2.2266 5.0572 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.1723 3.9004 -2.0695 34 1 2.3769 3.9644 -0.7610 35 1 0.6618 3.6808 -0.3783 36 1 3.5797 0.6498 1.9764 37 1 6.0169 0.3721 0.5762 38 1 5.9564 2.0063 1.2790 39 1 6.4086 2.2416 3.8976 40 1 4.6582 -2.1342 1.9841 41 1 6.2628 -1.9869 1.2143 42 1 5.5825 -3.9911 -0.7042 43 1 4.8317 -3.2595 4.4940 44 1 6.2463 -4.3192 4.7117 45 1 6.2443 -2.1269 6.0679 46 1 7.7046 -2.4550 5.1031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128235858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:52 Heat of formation + Delta-G solvation = 16.978974 kcal Electronic energy + Delta-G solvation = -28230.773706 eV Core-core repulsion = 24351.001038 eV Total energy + Delta-G solvation = -3879.772668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.02205 -39.80768 -37.41745 -36.32218 -34.76924 -33.63044 -32.92715 -31.27200 -30.24278 -29.10656 -27.76834 -26.39839 -25.77369 -24.49260 -23.47369 -22.06746 -21.74743 -20.23891 -20.11503 -18.47378 -17.46524 -17.00128 -16.73727 -16.05192 -15.64580 -15.37965 -14.98507 -14.75493 -14.54268 -14.33956 -13.96635 -13.86458 -13.66158 -13.46097 -13.28389 -13.20033 -12.75491 -12.49957 -12.39060 -11.98266 -11.72673 -11.64064 -11.57427 -11.32872 -11.15510 -10.99338 -10.87807 -10.79256 -10.75571 -10.51630 -10.22531 -10.19702 -10.09418 -9.20902 -8.91862 -8.74498 -8.57140 -7.93860 -7.10119 -6.02479 -3.45431 2.39378 2.80431 2.90563 2.99092 3.29098 3.36965 3.37180 3.53261 3.87797 4.30789 4.77600 4.85411 4.92029 4.94219 5.04644 5.19245 5.19517 5.25029 5.35644 5.36125 5.44111 5.52724 5.54871 5.59330 5.61396 5.70012 5.70604 5.83926 5.94273 6.08617 6.12882 6.20267 6.24971 6.35227 6.39240 6.52166 6.70007 6.88952 6.98158 7.06211 7.12645 7.55424 7.58515 7.78350 8.07949 8.20939 8.46669 8.90743 9.53163 10.05490 11.08392 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.004293 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.002734 B = 6521.164725 C = 7965.345980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.076 3.924 4 H 0.082 0.918 5 O -0.356 6.356 6 C 0.030 3.970 7 C 0.488 3.512 8 O -0.532 6.532 9 N -0.717 5.717 10 C 0.210 3.790 11 C -0.289 4.289 12 C 0.056 3.944 13 N -0.318 5.318 14 N -0.358 5.358 15 C 0.120 3.880 16 C 0.231 3.769 17 N -0.596 5.596 18 C -0.267 4.267 19 H 0.073 0.927 20 C 0.010 3.990 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.282 1.282 26 C 0.129 3.871 27 C 0.113 3.887 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.039 0.961 36 H 0.398 0.602 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.175 0.825 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.261 0.739 43 H 0.036 0.964 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.605 9.913 4.440 13.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C 0.014 3.986 4 H 0.100 0.900 5 O -0.273 6.273 6 C -0.066 4.066 7 C 0.273 3.727 8 O -0.408 6.408 9 N -0.370 5.370 10 C 0.086 3.914 11 C -0.301 4.301 12 C -0.131 4.131 13 N -0.138 5.138 14 N -0.139 5.139 15 C -0.012 4.012 16 C 0.104 3.896 17 N -0.319 5.319 18 C -0.395 4.395 19 H 0.091 0.909 20 C -0.189 4.189 21 N -0.545 5.545 22 Si 0.737 3.263 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.208 1.208 26 C 0.001 3.999 27 C -0.010 4.010 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.192 0.808 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.765 9.817 4.720 13.377 hybrid contribution 0.289 -0.328 -0.609 0.750 sum -7.476 9.489 4.111 12.760 Atomic orbital electron populations 1.21714 0.94698 1.02119 1.01934 1.21600 0.96954 0.92646 1.04391 1.22136 0.91123 0.96485 0.88826 0.90008 1.87994 1.88096 1.20564 1.30649 1.22823 0.99597 0.81779 1.02442 1.21307 0.91066 0.77989 0.82380 1.90695 1.65073 1.46369 1.38658 1.46255 1.08273 1.64279 1.18165 1.19299 0.79036 1.00035 0.93006 1.19432 1.20903 0.91885 0.97869 1.23668 0.99482 0.99227 0.90716 1.77167 1.25591 0.87544 1.23498 1.48502 1.51342 1.04955 1.09082 1.22594 0.94023 0.97922 0.86651 1.19923 0.98855 0.77979 0.92809 1.44190 1.66368 1.18517 1.02776 1.19112 1.19642 1.09457 0.91330 0.90927 1.25024 0.97065 0.99084 0.97758 1.69917 1.28017 1.46806 1.09807 0.86281 0.80879 0.80010 0.79080 1.20697 1.21309 1.20828 1.21271 0.96745 0.95444 0.86456 1.22558 1.02364 0.80623 0.95487 0.92126 0.93009 0.91988 0.89976 0.89746 0.89472 0.93764 0.94200 0.76771 0.90827 0.91455 0.80797 0.92570 0.87309 0.92934 0.94627 0.89724 0.90196 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.81 37.16 0.36 -1.08 16 2 C -0.12 -1.41 5.61 -26.73 -0.15 -1.56 16 3 C 0.08 0.95 2.51 -27.88 -0.07 0.88 16 4 H 0.08 0.80 7.79 -51.93 -0.40 0.39 16 5 O -0.36 -4.90 9.42 -55.09 -0.52 -5.42 16 6 C 0.03 0.31 10.81 101.05 1.09 1.41 16 7 C 0.49 7.60 7.13 -10.99 -0.08 7.53 16 8 O -0.53 -10.45 16.51 -14.30 -0.24 -10.69 16 9 N -0.72 -10.31 5.45 -61.48 -0.33 -10.65 16 10 C 0.21 3.37 5.95 -5.20 -0.03 3.34 16 11 C -0.29 -4.92 5.46 -105.21 -0.57 -5.49 16 12 C 0.06 0.89 11.97 -17.21 -0.21 0.69 16 13 N -0.32 -5.78 12.61 30.70 0.39 -5.39 16 14 N -0.36 -6.74 4.03 -56.93 -0.23 -6.96 16 15 C 0.12 2.33 6.71 -82.17 -0.55 1.77 16 16 C 0.23 5.10 5.11 -4.48 -0.02 5.08 16 17 N -0.60 -13.64 3.01 -172.96 -0.52 -14.16 16 18 C -0.27 -6.75 9.66 -15.06 -0.15 -6.90 16 19 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 20 C 0.01 0.27 5.00 -17.43 -0.09 0.18 16 21 N -0.90 -24.27 11.07 55.49 0.61 -23.66 16 22 Si 0.91 20.74 29.58 -169.99 -5.03 15.71 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.13 2.36 6.49 -3.59 -0.02 2.34 16 27 C 0.11 1.89 7.45 -3.88 -0.03 1.86 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.63 7.82 -51.93 -0.41 0.22 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.08 0.97 7.77 -51.93 -0.40 0.56 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.32 8.09 -51.93 -0.42 -0.10 16 36 H 0.40 5.03 8.17 -40.82 -0.33 4.70 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.18 2.16 8.06 -52.49 -0.42 1.74 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.11 2.74 6.46 -51.93 -0.34 2.40 16 42 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.43 7.94 -51.93 -0.41 1.01 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -31.37 380.53 -7.98 -39.35 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.34 Total: 6.09 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.51 Total: 10.04 kcal Atomic # 7 Polarization: -60.74 SS G_CDS: -0.08 Total: -60.82 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.76 Total: -16.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.37 -7.98 -39.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128235858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.329 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds