Wall clock time and date at job start Tue Mar 31 2020 13:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47101 * 2 1 4 4 H 1.08999 * 109.47095 * 55.00246 * 3 2 1 5 5 O 1.42899 * 109.46917 * 294.99933 * 3 2 1 6 6 C 1.42896 * 113.99833 * 149.99972 * 5 3 2 7 7 C 1.50700 * 109.47056 * 174.99826 * 3 2 1 8 8 O 1.21280 * 119.99533 * 114.99557 * 7 3 2 9 9 N 1.34775 * 120.00260 * 295.00200 * 7 3 2 10 10 C 1.46494 * 119.99930 * 180.02562 * 9 7 3 11 11 C 1.50697 * 109.47229 * 179.97438 * 10 9 7 12 12 C 1.40073 * 126.12726 * 259.68983 * 11 10 9 13 13 N 1.31010 * 108.25695 * 179.84817 * 12 11 10 14 14 N 1.39741 * 108.17563 * 0.60861 * 13 12 11 15 15 C 1.34641 * 126.12499 * 79.99739 * 11 10 9 16 16 C 1.51036 * 127.91197 * 359.65470 * 15 11 10 17 17 N 1.47504 * 107.00208 * 169.52707 * 16 15 11 18 18 C 1.36936 * 121.01201 * 222.90210 * 17 16 15 19 19 H 1.08004 * 120.00163 * 155.91380 * 18 17 16 20 20 C 1.38810 * 120.00079 * 335.91322 * 18 17 16 21 21 N 1.31619 * 120.00137 * 344.46338 * 20 18 17 22 22 Si 1.86805 * 120.00174 * 164.46311 * 20 18 17 23 23 H 1.48502 * 109.47014 * 60.00099 * 22 20 18 24 24 H 1.48501 * 109.47205 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47152 * 300.00199 * 22 20 18 26 26 C 1.47084 * 117.97761 * 42.92652 * 17 16 15 27 27 C 1.46553 * 127.32104 * 179.18230 * 14 13 12 28 28 H 1.08997 * 109.47288 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47062 * 300.00169 * 1 2 3 30 30 H 1.08997 * 109.47403 * 59.99985 * 1 2 3 31 31 H 1.08998 * 109.46823 * 239.99924 * 2 1 3 32 32 H 1.08996 * 109.47012 * 119.99643 * 2 1 3 33 33 H 1.08997 * 109.47347 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.47042 * 59.99992 * 6 5 3 35 35 H 1.09005 * 109.47550 * 300.00006 * 6 5 3 36 36 H 0.96998 * 120.00032 * 359.97438 * 9 7 3 37 37 H 1.09004 * 109.47103 * 299.99539 * 10 9 7 38 38 H 1.08993 * 109.47556 * 59.99673 * 10 9 7 39 39 H 1.08001 * 125.86567 * 0.03865 * 12 11 10 40 40 H 1.09002 * 109.95124 * 288.90206 * 16 15 11 41 41 H 1.09002 * 109.94701 * 50.15561 * 16 15 11 42 42 H 0.96998 * 120.00352 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.51640 * 56.34237 * 26 17 16 44 44 H 1.08995 * 109.51472 * 176.49642 * 26 17 16 45 45 H 1.08998 * 109.51461 * 41.59949 * 27 14 13 46 46 H 1.08998 * 109.51000 * 281.45424 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 1.4559 3.4902 -1.1003 7 6 3.5419 1.4443 0.1239 8 8 4.2250 1.8610 -0.7875 9 7 4.1260 0.9828 1.2474 10 6 5.5860 0.9851 1.3679 11 6 5.9801 0.4234 2.7096 12 6 6.3536 1.1647 3.8379 13 7 6.6206 0.3272 4.8093 14 7 6.4395 -0.9718 4.3271 15 6 6.0420 -0.8812 3.0368 16 6 5.7318 -2.0730 2.1624 17 7 6.1905 -3.2720 2.8889 18 6 6.8614 -4.2753 2.2420 19 1 7.5160 -4.9319 2.7960 20 6 6.7001 -4.4486 0.8743 21 7 5.6950 -3.8703 0.2516 22 14 7.9097 -5.5025 -0.0828 23 1 7.8970 -6.8855 0.4580 24 1 7.5193 -5.5270 -1.5154 25 1 9.2746 -4.9323 0.0482 26 6 5.9048 -3.3574 4.3292 27 6 6.6398 -2.2266 5.0572 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.1723 3.9004 -2.0695 34 1 2.3769 3.9644 -0.7610 35 1 0.6618 3.6808 -0.3783 36 1 3.5797 0.6498 1.9764 37 1 6.0169 0.3721 0.5762 38 1 5.9564 2.0063 1.2790 39 1 6.4086 2.2416 3.8976 40 1 4.6582 -2.1342 1.9841 41 1 6.2628 -1.9869 1.2143 42 1 5.5825 -3.9911 -0.7042 43 1 4.8317 -3.2595 4.4940 44 1 6.2463 -4.3192 4.7117 45 1 6.2443 -2.1269 6.0679 46 1 7.7046 -2.4550 5.1031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128235858.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:51 Heat of formation + Delta-G solvation = -3.693069 kcal Electronic energy + Delta-G solvation = -28231.670113 eV Core-core repulsion = 24351.001038 eV Total energy + Delta-G solvation = -3880.669075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.44018 -41.00457 -38.50725 -37.95406 -36.13173 -34.79029 -34.37492 -32.85897 -31.82517 -30.48516 -28.81086 -27.79787 -27.08943 -25.81287 -25.06733 -23.35608 -22.97999 -21.60465 -21.36949 -19.99539 -18.67760 -18.53934 -18.04913 -17.49307 -16.90637 -16.73889 -16.36733 -16.18972 -15.76620 -15.59139 -15.44714 -15.17651 -14.95362 -14.87110 -14.70567 -14.33036 -14.08409 -13.95043 -13.39560 -13.34385 -13.09823 -12.98350 -12.92295 -12.72124 -12.61514 -12.43657 -12.37464 -12.04235 -12.02945 -11.92183 -11.72239 -11.65391 -11.53407 -10.77349 -10.36831 -10.06843 -10.04708 -9.37657 -8.94874 -7.98836 -5.42188 0.92511 1.45300 1.48940 1.53742 1.55566 1.60418 1.65672 2.39247 2.44961 2.86333 3.20364 3.43536 3.60346 3.73374 3.83396 3.91055 3.94429 4.14570 4.19424 4.24020 4.35903 4.37716 4.45639 4.47335 4.55319 4.60176 4.75823 4.78570 4.83776 4.86861 4.88721 4.93348 5.02260 5.12264 5.18980 5.23894 5.36875 5.42285 5.44330 5.58311 5.75000 6.06255 6.08874 6.20191 6.60426 6.80048 6.99160 7.25176 7.65770 8.16544 9.09968 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.004293 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.002734 B = 6521.164725 C = 7965.345980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.083 3.917 4 H 0.120 0.880 5 O -0.381 6.381 6 C 0.024 3.976 7 C 0.484 3.516 8 O -0.579 6.579 9 N -0.706 5.706 10 C 0.216 3.784 11 C -0.275 4.275 12 C 0.068 3.932 13 N -0.326 5.326 14 N -0.366 5.366 15 C 0.097 3.903 16 C 0.250 3.750 17 N -0.616 5.616 18 C -0.270 4.270 19 H 0.079 0.921 20 C -0.040 4.040 21 N -0.929 5.929 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.297 1.297 25 H -0.283 1.283 26 C 0.129 3.871 27 C 0.117 3.883 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.032 0.968 35 H 0.069 0.931 36 H 0.409 0.591 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.215 0.785 40 H 0.038 0.962 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 11.054 6.639 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C 0.021 3.979 4 H 0.138 0.862 5 O -0.299 6.299 6 C -0.072 4.072 7 C 0.270 3.730 8 O -0.458 6.458 9 N -0.359 5.359 10 C 0.092 3.908 11 C -0.287 4.287 12 C -0.119 4.119 13 N -0.146 5.146 14 N -0.148 5.148 15 C -0.035 4.035 16 C 0.123 3.877 17 N -0.339 5.339 18 C -0.399 4.399 19 H 0.097 0.903 20 C -0.236 4.236 21 N -0.574 5.574 22 Si 0.791 3.209 23 H -0.195 1.195 24 H -0.223 1.223 25 H -0.209 1.209 26 C 0.002 3.998 27 C -0.006 4.006 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.116 0.884 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.245 0.755 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.232 0.768 40 H 0.056 0.944 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.466 10.940 6.986 15.497 hybrid contribution 0.513 -0.634 -1.240 1.484 sum -7.954 10.307 5.745 14.230 Atomic orbital electron populations 1.21671 0.92585 1.02622 1.02899 1.21599 0.98744 0.92152 1.03044 1.22205 0.88606 0.97140 0.89913 0.86235 1.87970 1.87950 1.22392 1.31577 1.23022 1.00046 0.80017 1.04076 1.22017 0.92523 0.76798 0.81616 1.90667 1.66406 1.48573 1.40167 1.46128 1.07672 1.63667 1.18395 1.19137 0.80016 1.00076 0.91590 1.19511 1.19689 0.91233 0.98312 1.24242 0.97601 1.00800 0.89243 1.77166 1.25983 0.87323 1.24124 1.48686 1.51531 1.05791 1.08773 1.22213 0.96347 0.97722 0.87200 1.19353 0.97097 0.79333 0.91961 1.44418 1.66544 1.18289 1.04638 1.19453 1.19368 1.09424 0.91691 0.90327 1.25680 0.98470 1.00706 0.98744 1.70066 1.29578 1.48495 1.09232 0.85409 0.78890 0.79204 0.77365 1.19543 1.22304 1.20933 1.21437 0.97422 0.97089 0.83877 1.22548 1.02231 0.79372 0.96441 0.91909 0.90700 0.92285 0.93055 0.89463 0.88376 0.94880 0.91230 0.75494 0.94156 0.89898 0.76842 0.94441 0.91225 0.93881 0.93995 0.88296 0.86907 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.81 71.98 0.71 -1.83 16 2 C -0.12 -2.78 5.61 30.60 0.17 -2.61 16 3 C 0.08 1.99 2.51 29.85 0.08 2.06 16 4 H 0.12 1.96 7.79 -2.39 -0.02 1.94 16 5 O -0.38 -10.24 9.42 -129.99 -1.22 -11.46 16 6 C 0.02 0.47 10.81 113.37 1.23 1.69 16 7 C 0.48 15.16 7.13 87.66 0.63 15.78 16 8 O -0.58 -23.42 16.51 15.96 0.26 -23.16 16 9 N -0.71 -20.13 5.45 -466.81 -2.54 -22.67 16 10 C 0.22 6.96 5.95 85.63 0.51 7.47 16 11 C -0.28 -9.09 5.46 -20.24 -0.11 -9.20 16 12 C 0.07 1.97 11.97 85.26 1.02 2.99 16 13 N -0.33 -10.93 12.61 -56.80 -0.72 -11.65 16 14 N -0.37 -13.17 4.03 -334.03 -1.35 -14.51 16 15 C 0.10 3.73 6.71 41.30 0.28 4.00 16 16 C 0.25 11.39 5.11 85.55 0.44 11.83 16 17 N -0.62 -28.41 3.01 -701.12 -2.11 -30.52 16 18 C -0.27 -13.78 9.66 84.03 0.81 -12.97 16 19 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 20 C -0.04 -2.09 5.00 84.86 0.42 -1.67 16 21 N -0.93 -52.06 11.07 21.65 0.24 -51.82 16 22 Si 0.96 43.43 29.58 68.60 2.03 45.46 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 C 0.13 4.55 6.49 86.36 0.56 5.11 16 27 C 0.12 3.65 7.45 86.46 0.64 4.29 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.11 7.82 -2.39 -0.02 1.09 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.97 7.77 -2.39 -0.02 1.96 16 33 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.91 8.09 -2.38 -0.02 0.89 16 36 H 0.41 9.93 8.17 -92.71 -0.76 9.17 16 37 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.22 4.35 8.06 -2.91 -0.02 4.33 16 40 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 3.71 6.46 -2.39 -0.02 3.70 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 3.17 7.94 -2.39 -0.02 3.15 16 45 H 0.11 2.79 8.14 -2.39 -0.02 2.78 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -69.99 380.53 2.19 -67.80 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.22 Total: 25.60 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 7.38 Total: 26.94 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -6.48 Total: -131.18 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.96 Total: -34.62 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -69.99 2.19 -67.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128235858.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.109 kcal (2) G-P(sol) polarization free energy of solvation -69.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds