Wall clock time and date at job start Tue Mar 31 2020 14:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46718 * 2 1 4 4 O 1.42909 * 109.46699 * 180.02562 * 3 2 1 5 5 C 1.42905 * 113.99728 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46806 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00201 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99603 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.46729 * 179.97438 * 9 8 6 11 11 C 1.40073 * 126.12313 * 259.88192 * 10 9 8 12 12 N 1.31006 * 108.25295 * 179.83823 * 11 10 9 13 13 N 1.39749 * 108.17885 * 0.35335 * 12 11 10 14 14 C 1.34642 * 126.12567 * 79.99778 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68657 * 14 10 9 16 16 N 1.47494 * 107.00460 * 169.71753 * 15 14 10 17 17 C 1.36935 * 121.01655 * 222.90206 * 16 15 14 18 18 H 1.08003 * 120.00000 * 155.90950 * 17 16 15 19 19 C 1.38810 * 120.00058 * 335.91821 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.45450 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45798 * 19 17 16 22 22 H 1.48501 * 109.46987 * 89.99326 * 21 19 17 23 23 H 1.48493 * 109.47222 * 209.99609 * 21 19 17 24 24 H 1.48502 * 109.46853 * 330.00010 * 21 19 17 25 25 C 1.47090 * 117.97260 * 42.92063 * 16 15 14 26 26 C 1.46556 * 127.32195 * 179.45647 * 13 12 11 27 27 H 1.09000 * 109.46830 * 299.99871 * 1 2 3 28 28 H 1.09000 * 109.47509 * 59.99488 * 1 2 3 29 29 H 1.08994 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46830 * 240.00129 * 2 1 3 31 31 H 1.08996 * 109.47318 * 119.99777 * 2 1 3 32 32 H 1.09000 * 109.47365 * 60.00457 * 3 2 1 33 33 H 1.08996 * 109.47568 * 299.99980 * 3 2 1 34 34 H 1.09002 * 109.47084 * 60.00398 * 5 4 3 35 35 H 1.08995 * 109.46990 * 300.00286 * 5 4 3 36 36 H 0.96995 * 120.00182 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47524 * 60.00106 * 9 8 6 38 38 H 1.08991 * 109.47107 * 299.99056 * 9 8 6 39 39 H 1.08007 * 125.87116 * 0.02562 * 11 10 9 40 40 H 1.08997 * 109.95132 * 289.09278 * 15 14 10 41 41 H 1.09000 * 109.94610 * 50.34741 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.51221 * 56.33544 * 25 16 15 44 44 H 1.09002 * 109.51614 * 176.49615 * 25 16 15 45 45 H 1.09005 * 109.50594 * 41.61326 * 26 13 12 46 46 H 1.08998 * 109.50897 * 281.47318 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7481 -0.0012 6 6 5.5525 2.6290 -0.0025 7 8 6.0741 1.5341 -0.0023 8 7 6.3164 3.7394 -0.0027 9 6 7.7769 3.6236 -0.0045 10 6 8.3898 5.0004 -0.0050 11 6 8.9059 5.6741 -1.1194 12 7 9.3459 6.8433 -0.7246 13 7 9.1316 6.9475 0.6524 14 6 8.5414 5.8023 1.0659 15 6 8.1379 5.5278 2.4953 16 7 8.7354 6.5916 3.3240 17 6 9.3301 6.3018 4.5230 18 1 10.0796 6.9655 4.9284 19 6 8.9699 5.1551 5.2172 20 7 7.8660 4.5127 4.8991 21 14 10.0516 4.5236 6.6030 22 1 9.6209 5.1359 7.8855 23 1 9.9282 3.0465 6.6935 24 1 11.4658 4.8865 6.3316 25 6 8.6726 7.9733 2.8235 26 6 9.4759 8.0755 1.5224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.7290 3.2892 0.8888 35 1 3.7281 3.2887 -0.8912 36 1 5.8993 4.6151 -0.0025 37 1 8.0975 3.0833 -0.8951 38 1 8.0995 3.0824 0.8848 39 1 8.9334 5.2960 -2.1308 40 1 7.0520 5.5513 2.5862 41 1 8.5173 4.5552 2.8085 42 1 7.6140 3.7116 5.3844 43 1 7.6343 8.2446 2.6327 44 1 9.0957 8.6493 3.5666 45 1 9.2343 9.0112 1.0179 46 1 10.5416 8.0481 1.7493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128241029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:14 Heat of formation + Delta-G solvation = 14.937801 kcal Electronic energy + Delta-G solvation = -27240.097685 eV Core-core repulsion = 23360.236505 eV Total energy + Delta-G solvation = -3879.861180 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.01302 -39.45019 -37.72820 -36.32816 -34.74035 -33.82497 -33.00828 -31.37303 -30.24868 -29.42282 -27.96391 -26.16513 -25.64945 -24.42382 -23.45492 -21.80046 -21.74911 -20.33695 -20.13091 -18.44531 -17.16849 -16.86712 -16.73874 -16.58511 -15.89315 -15.52443 -15.19151 -15.08274 -14.68487 -14.33071 -14.03404 -13.87360 -13.62043 -13.43540 -13.26293 -13.16411 -12.74191 -12.49190 -12.26694 -12.14452 -12.12703 -11.71272 -11.61701 -11.31950 -11.10931 -11.06948 -10.99392 -10.89473 -10.74061 -10.22135 -10.20072 -10.09646 -9.78070 -9.62562 -8.92550 -8.75124 -8.57258 -7.94986 -7.10167 -6.02945 -3.45634 2.38738 2.76676 2.86892 2.98727 3.28031 3.32070 3.36870 3.38086 4.09723 4.30555 4.74339 4.79508 4.92523 4.96179 5.04603 5.07973 5.12171 5.17939 5.19225 5.26058 5.29278 5.35960 5.50322 5.51702 5.54335 5.59466 5.70033 5.74978 5.84532 5.91706 6.00294 6.13435 6.20230 6.35504 6.39173 6.52599 6.68753 6.88892 6.99006 7.06784 7.12772 7.55520 7.58638 7.77824 8.07661 8.21333 8.47657 8.90420 9.52932 10.05252 11.08031 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.003321 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.691462 B = 8430.063979 C =10244.077352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.513 3.487 7 O -0.526 6.526 8 N -0.718 5.718 9 C 0.212 3.788 10 C -0.288 4.288 11 C 0.057 3.943 12 N -0.318 5.318 13 N -0.358 5.358 14 C 0.120 3.880 15 C 0.231 3.769 16 N -0.596 5.596 17 C -0.265 4.265 18 H 0.073 0.927 19 C 0.009 3.991 20 N -0.903 5.903 21 Si 0.908 3.092 22 H -0.285 1.285 23 H -0.286 1.286 24 H -0.278 1.278 25 C 0.129 3.871 26 C 0.113 3.887 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.176 0.824 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.260 0.740 43 H 0.036 0.964 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 0.097 -10.427 14.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.401 6.401 8 N -0.371 5.371 9 C 0.089 3.911 10 C -0.301 4.301 11 C -0.130 4.130 12 N -0.138 5.138 13 N -0.139 5.139 14 C -0.012 4.012 15 C 0.104 3.896 16 N -0.319 5.319 17 C -0.393 4.393 18 H 0.091 0.909 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.212 1.212 24 H -0.204 1.204 25 C 0.001 3.999 26 C -0.010 4.010 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.193 0.807 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.132 0.209 -10.584 13.980 hybrid contribution -0.158 -0.248 0.885 0.933 sum -9.290 -0.039 -9.699 13.430 Atomic orbital electron populations 1.21696 0.94810 1.02195 1.01948 1.21447 0.95465 0.95571 1.03678 1.22618 0.80823 0.98129 1.00178 1.88008 1.19274 1.25476 1.95426 1.22212 0.92159 0.86702 1.02479 1.20134 0.88384 0.84759 0.76975 1.90717 1.74597 1.26525 1.48277 1.46086 1.07412 1.08354 1.75249 1.19303 0.77445 0.92161 1.02224 1.19426 1.17967 0.99882 0.92793 1.23682 0.98327 0.91891 0.99118 1.77171 1.25368 1.20493 0.90762 1.48505 1.46118 1.14166 1.05108 1.22593 0.93018 0.86440 0.99156 1.19922 0.96675 0.94772 0.78232 1.44204 1.67696 0.99648 1.20354 1.19137 1.15739 1.08337 0.96115 0.90900 1.25038 0.96240 0.99621 0.98196 1.69929 1.21550 1.20153 1.42980 0.86211 0.80179 0.78277 0.81594 1.21161 1.21210 1.20380 1.21272 0.97098 0.89417 0.92143 1.22555 1.01474 0.86043 0.90947 0.92492 0.92618 0.92051 0.91054 0.90880 0.93109 0.93356 0.90110 0.90609 0.76703 0.91268 0.90748 0.80725 0.92593 0.87270 0.93005 0.94637 0.89721 0.90189 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.14 6.30 -26.73 -0.17 -1.30 16 3 C 0.06 0.59 5.94 37.16 0.22 0.81 16 4 O -0.36 -5.12 9.88 -55.14 -0.54 -5.67 16 5 C 0.04 0.54 6.42 36.01 0.23 0.77 16 6 C 0.51 8.07 7.91 -10.99 -0.09 7.99 16 7 O -0.53 -10.62 16.50 -14.35 -0.24 -10.86 16 8 N -0.72 -10.31 5.55 -61.47 -0.34 -10.65 16 9 C 0.21 3.40 5.95 -5.19 -0.03 3.37 16 10 C -0.29 -4.91 5.46 -105.20 -0.57 -5.49 16 11 C 0.06 0.91 11.97 -17.22 -0.21 0.70 16 12 N -0.32 -5.78 12.61 30.70 0.39 -5.39 16 13 N -0.36 -6.75 4.03 -56.93 -0.23 -6.98 16 14 C 0.12 2.33 6.71 -82.17 -0.55 1.78 16 15 C 0.23 5.11 5.11 -4.49 -0.02 5.09 16 16 N -0.60 -13.69 3.01 -172.97 -0.52 -14.22 16 17 C -0.26 -6.71 9.67 -15.06 -0.15 -6.85 16 18 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 19 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 20 N -0.90 -24.41 11.07 55.49 0.61 -23.79 16 21 Si 0.91 20.76 29.58 -169.99 -5.03 15.73 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.13 2.36 6.49 -3.59 -0.02 2.34 16 26 C 0.11 1.90 7.44 -3.88 -0.03 1.87 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 4.94 8.46 -40.82 -0.35 4.59 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.18 2.17 8.06 -52.48 -0.42 1.75 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.11 2.75 6.46 -51.93 -0.34 2.41 16 42 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.43 7.94 -51.93 -0.41 1.02 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 383.08 15.07 5.77 5.77 Total: -1.00 -32.09 383.08 -8.64 -40.73 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.41 Total: 4.76 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -1.11 Total: 10.57 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.09 Total: -61.03 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.78 Total: -16.53 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.09 -8.64 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128241029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.667 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds