Wall clock time and date at job start Tue Mar 31 2020 14:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46718 * 2 1 4 4 O 1.42909 * 109.46699 * 180.02562 * 3 2 1 5 5 C 1.42905 * 113.99728 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46806 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00201 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99603 * 180.02562 * 8 6 5 10 10 C 1.50709 * 109.46729 * 179.97438 * 9 8 6 11 11 C 1.40073 * 126.12313 * 259.88192 * 10 9 8 12 12 N 1.31006 * 108.25295 * 179.83823 * 11 10 9 13 13 N 1.39749 * 108.17885 * 0.35335 * 12 11 10 14 14 C 1.34642 * 126.12567 * 79.99778 * 10 9 8 15 15 C 1.51035 * 127.91038 * 359.68657 * 14 10 9 16 16 N 1.47494 * 107.00460 * 169.71753 * 15 14 10 17 17 C 1.36935 * 121.01655 * 222.90206 * 16 15 14 18 18 H 1.08003 * 120.00000 * 155.90950 * 17 16 15 19 19 C 1.38810 * 120.00058 * 335.91821 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.45450 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.45798 * 19 17 16 22 22 H 1.48501 * 109.46987 * 89.99326 * 21 19 17 23 23 H 1.48493 * 109.47222 * 209.99609 * 21 19 17 24 24 H 1.48502 * 109.46853 * 330.00010 * 21 19 17 25 25 C 1.47090 * 117.97260 * 42.92063 * 16 15 14 26 26 C 1.46556 * 127.32195 * 179.45647 * 13 12 11 27 27 H 1.09000 * 109.46830 * 299.99871 * 1 2 3 28 28 H 1.09000 * 109.47509 * 59.99488 * 1 2 3 29 29 H 1.08994 * 109.47399 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46830 * 240.00129 * 2 1 3 31 31 H 1.08996 * 109.47318 * 119.99777 * 2 1 3 32 32 H 1.09000 * 109.47365 * 60.00457 * 3 2 1 33 33 H 1.08996 * 109.47568 * 299.99980 * 3 2 1 34 34 H 1.09002 * 109.47084 * 60.00398 * 5 4 3 35 35 H 1.08995 * 109.46990 * 300.00286 * 5 4 3 36 36 H 0.96995 * 120.00182 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47524 * 60.00106 * 9 8 6 38 38 H 1.08991 * 109.47107 * 299.99056 * 9 8 6 39 39 H 1.08007 * 125.87116 * 0.02562 * 11 10 9 40 40 H 1.08997 * 109.95132 * 289.09278 * 15 14 10 41 41 H 1.09000 * 109.94610 * 50.34741 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.51221 * 56.33544 * 25 16 15 44 44 H 1.09002 * 109.51614 * 176.49615 * 25 16 15 45 45 H 1.09005 * 109.50594 * 41.61326 * 26 13 12 46 46 H 1.08998 * 109.50897 * 281.47318 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7481 -0.0012 6 6 5.5525 2.6290 -0.0025 7 8 6.0741 1.5341 -0.0023 8 7 6.3164 3.7394 -0.0027 9 6 7.7769 3.6236 -0.0045 10 6 8.3898 5.0004 -0.0050 11 6 8.9059 5.6741 -1.1194 12 7 9.3459 6.8433 -0.7246 13 7 9.1316 6.9475 0.6524 14 6 8.5414 5.8023 1.0659 15 6 8.1379 5.5278 2.4953 16 7 8.7354 6.5916 3.3240 17 6 9.3301 6.3018 4.5230 18 1 10.0796 6.9655 4.9284 19 6 8.9699 5.1551 5.2172 20 7 7.8660 4.5127 4.8991 21 14 10.0516 4.5236 6.6030 22 1 9.6209 5.1359 7.8855 23 1 9.9282 3.0465 6.6935 24 1 11.4658 4.8865 6.3316 25 6 8.6726 7.9733 2.8235 26 6 9.4759 8.0755 1.5224 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.7290 3.2892 0.8888 35 1 3.7281 3.2887 -0.8912 36 1 5.8993 4.6151 -0.0025 37 1 8.0975 3.0833 -0.8951 38 1 8.0995 3.0824 0.8848 39 1 8.9334 5.2960 -2.1308 40 1 7.0520 5.5513 2.5862 41 1 8.5173 4.5552 2.8085 42 1 7.6140 3.7116 5.3844 43 1 7.6343 8.2446 2.6327 44 1 9.0957 8.6493 3.5666 45 1 9.2343 9.0112 1.0179 46 1 10.5416 8.0481 1.7493 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128241029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:13 Heat of formation + Delta-G solvation = -6.268531 kcal Electronic energy + Delta-G solvation = -27241.017261 eV Core-core repulsion = 23360.236505 eV Total energy + Delta-G solvation = -3880.780755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43290 -40.67507 -38.71620 -37.96439 -36.10509 -34.64336 -34.55521 -32.96842 -31.83743 -30.75577 -29.11785 -27.72561 -26.69389 -25.72283 -25.04817 -23.31039 -22.48806 -21.62493 -21.49532 -19.97999 -18.54362 -18.37073 -17.94860 -17.48250 -17.32981 -16.84968 -16.56422 -16.29276 -16.13891 -15.54286 -15.46759 -15.17157 -14.98146 -14.88549 -14.67429 -14.30004 -14.03075 -13.92221 -13.35299 -13.14922 -13.03937 -13.00274 -12.90567 -12.86386 -12.71829 -12.62429 -12.35103 -12.03729 -11.92215 -11.81969 -11.77075 -11.61772 -10.93327 -10.77348 -10.65373 -10.06715 -10.04719 -9.39376 -8.95167 -7.99412 -5.42469 0.92342 1.44567 1.48555 1.53426 1.55908 1.62440 1.64664 2.17743 2.44560 3.10059 3.20198 3.43218 3.60878 3.80273 3.84253 4.05264 4.12680 4.15928 4.19221 4.24155 4.25941 4.32333 4.37893 4.43919 4.47568 4.58663 4.66565 4.76238 4.79184 4.87136 4.88146 4.93768 5.02505 5.17241 5.24033 5.24896 5.36528 5.37023 5.44224 5.58291 5.75718 6.09084 6.13225 6.20021 6.61702 6.80483 6.98866 7.27152 7.65414 8.16208 9.09728 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.003321 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.691462 B = 8430.063979 C =10244.077352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.126 4.126 3 C 0.054 3.946 4 O -0.401 6.401 5 C 0.049 3.951 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.706 5.706 9 C 0.218 3.782 10 C -0.274 4.274 11 C 0.068 3.932 12 N -0.326 5.326 13 N -0.367 5.367 14 C 0.096 3.904 15 C 0.249 3.751 16 N -0.616 5.616 17 C -0.267 4.267 18 H 0.079 0.921 19 C -0.043 4.043 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.272 1.272 25 C 0.128 3.872 26 C 0.117 3.883 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.411 0.589 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.216 0.784 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.701 1.725 -12.039 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.022 4.022 4 O -0.320 6.320 5 C -0.031 4.031 6 C 0.294 3.706 7 O -0.458 6.458 8 N -0.359 5.359 9 C 0.093 3.907 10 C -0.286 4.286 11 C -0.118 4.118 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.036 4.036 15 C 0.122 3.878 16 N -0.340 5.340 17 C -0.396 4.396 18 H 0.097 0.903 19 C -0.239 4.239 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.207 1.207 23 H -0.224 1.224 24 H -0.197 1.197 25 C 0.002 3.998 26 C -0.006 4.006 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.132 0.868 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.232 0.768 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.658 1.913 -12.204 15.681 hybrid contribution 0.008 -0.712 1.326 1.505 sum -9.651 1.201 -10.878 14.591 Atomic orbital electron populations 1.21664 0.92786 1.02897 1.02723 1.21489 0.97171 0.95165 1.02570 1.22847 0.78902 0.98801 1.01660 1.87967 1.21555 1.26691 1.95770 1.22284 0.89094 0.86665 1.05013 1.20885 0.90152 0.83964 0.75557 1.90689 1.75837 1.28427 1.50804 1.45946 1.06708 1.08886 1.74398 1.19141 0.78558 0.91566 1.01393 1.19501 1.16952 0.99523 0.92656 1.24255 0.96492 0.90781 1.00310 1.77169 1.25783 1.21495 0.90160 1.48689 1.46244 1.14239 1.05632 1.22215 0.95199 0.87948 0.98192 1.19356 0.95320 0.93111 0.80008 1.44437 1.67750 1.01754 1.20021 1.19465 1.15438 1.08111 0.96583 0.90330 1.25707 0.97357 1.00285 1.00553 1.70075 1.23035 1.20300 1.44103 0.85324 0.79010 0.76910 0.79494 1.20686 1.22352 1.19731 1.21440 0.97943 0.87149 0.93313 1.22544 1.00982 0.86924 0.90128 0.92025 0.91474 0.91454 0.91756 0.92479 0.92164 0.91147 0.88468 0.86773 0.75276 0.89791 0.93980 0.76799 0.94485 0.91131 0.93889 0.94009 0.88281 0.86907 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -2.25 6.30 30.60 0.19 -2.06 16 3 C 0.05 1.01 5.94 71.98 0.43 1.43 16 4 O -0.40 -11.08 9.88 -129.94 -1.28 -12.36 16 5 C 0.05 1.11 6.42 71.24 0.46 1.57 16 6 C 0.51 15.95 7.91 87.66 0.69 16.65 16 7 O -0.58 -24.07 16.50 16.01 0.26 -23.81 16 8 N -0.71 -19.97 5.55 -466.78 -2.59 -22.56 16 9 C 0.22 6.99 5.95 85.64 0.51 7.50 16 10 C -0.27 -9.04 5.46 -20.24 -0.11 -9.15 16 11 C 0.07 1.98 11.97 85.26 1.02 3.00 16 12 N -0.33 -10.95 12.61 -56.79 -0.72 -11.67 16 13 N -0.37 -13.19 4.03 -334.04 -1.35 -14.53 16 14 C 0.10 3.70 6.71 41.30 0.28 3.98 16 15 C 0.25 11.37 5.11 85.55 0.44 11.80 16 16 N -0.62 -28.46 3.01 -701.16 -2.11 -30.57 16 17 C -0.27 -13.60 9.67 84.03 0.81 -12.78 16 18 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 19 C -0.04 -2.27 5.00 84.86 0.42 -1.85 16 20 N -0.93 -52.15 11.07 21.65 0.24 -51.91 16 21 Si 0.96 43.43 29.58 68.60 2.03 45.46 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 25 C 0.13 4.54 6.49 86.35 0.56 5.10 16 26 C 0.12 3.66 7.44 86.45 0.64 4.30 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.41 9.66 8.46 -92.71 -0.78 8.88 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.22 4.38 8.06 -2.91 -0.02 4.36 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 3.76 6.46 -2.39 -0.02 3.74 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 3.17 7.94 -2.39 -0.02 3.15 16 45 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -71.60 383.08 1.74 -69.86 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.19 Total: 23.62 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 7.06 Total: 28.46 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -6.52 Total: -131.24 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.02 Total: -36.17 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -71.60 1.74 -69.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128241029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.589 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds