Wall clock time and date at job start Tue Mar 31 2020 14:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47242 * 2 1 4 4 O 1.42896 * 109.47012 * 119.99896 * 2 1 3 5 5 C 1.42901 * 114.00152 * 150.00286 * 4 2 1 6 6 C 1.50702 * 109.47385 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99806 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99888 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99681 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46853 * 179.97438 * 9 8 6 11 11 C 1.40073 * 126.12443 * 259.87822 * 10 9 8 12 12 N 1.31016 * 108.25278 * 179.83938 * 11 10 9 13 13 N 1.39746 * 108.17893 * 0.35712 * 12 11 10 14 14 C 1.34642 * 126.12213 * 80.00621 * 10 9 8 15 15 C 1.51042 * 127.91181 * 359.67789 * 14 10 9 16 16 N 1.47502 * 106.99911 * 169.72456 * 15 14 10 17 17 C 1.36935 * 121.00921 * 222.89840 * 16 15 14 18 18 H 1.08006 * 119.99822 * 155.91133 * 17 16 15 19 19 C 1.38810 * 120.00372 * 335.91985 * 17 16 15 20 20 N 1.31616 * 119.99791 * 344.46029 * 19 17 16 21 21 Si 1.86801 * 120.00237 * 164.46376 * 19 17 16 22 22 H 1.48504 * 109.47067 * 59.99674 * 21 19 17 23 23 H 1.48499 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46938 * 299.99878 * 21 19 17 25 25 C 1.47087 * 117.97661 * 42.92530 * 16 15 14 26 26 C 1.46547 * 127.32582 * 179.45335 * 13 12 11 27 27 H 1.08996 * 109.47615 * 300.00344 * 1 2 3 28 28 H 1.09000 * 109.47061 * 60.00231 * 1 2 3 29 29 H 1.09002 * 109.47085 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47560 * 240.00101 * 2 1 3 31 31 H 1.09000 * 109.46904 * 299.99865 * 3 2 1 32 32 H 1.09001 * 109.46761 * 59.99611 * 3 2 1 33 33 H 1.08996 * 109.47228 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47149 * 59.99545 * 5 4 2 35 35 H 1.09008 * 109.46982 * 300.00070 * 5 4 2 36 36 H 0.96992 * 120.00124 * 359.97438 * 8 6 5 37 37 H 1.08997 * 109.47040 * 60.00068 * 9 8 6 38 38 H 1.08995 * 109.46963 * 299.99998 * 9 8 6 39 39 H 1.07995 * 125.87459 * 0.03643 * 11 10 9 40 40 H 1.08997 * 109.94720 * 289.10011 * 15 14 10 41 41 H 1.08994 * 109.94586 * 50.35420 * 15 14 10 42 42 H 0.97001 * 120.00162 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.51638 * 56.33228 * 25 16 15 44 44 H 1.08993 * 109.51397 * 176.49306 * 25 16 15 45 45 H 1.09003 * 109.50738 * 41.61264 * 26 13 12 46 46 H 1.09005 * 109.50863 * 281.47866 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 3.2659 -1.3244 0.9887 6 6 3.6698 -1.9977 2.2750 7 8 2.9500 -1.9268 3.2486 8 7 4.8309 -2.6787 2.3435 9 6 5.2232 -3.3337 3.5938 10 6 6.5511 -4.0210 3.4056 11 6 6.7475 -5.3877 3.1701 12 7 8.0349 -5.6040 3.0580 13 7 8.6979 -4.3854 3.2264 14 6 7.7613 -3.4316 3.4361 15 6 8.0768 -1.9707 3.6545 16 7 9.5355 -1.8689 3.8485 17 6 10.0631 -1.0653 4.8236 18 1 11.0462 -1.2720 5.2204 19 6 9.3345 0.0148 5.3024 20 7 8.2916 0.4548 4.6307 21 14 9.8340 0.8441 6.9000 22 1 11.2163 1.3718 6.7726 23 1 8.9020 1.9633 7.1893 24 1 9.7814 -0.1435 8.0078 25 6 10.4061 -2.6564 2.9622 26 6 10.1438 -4.1486 3.1933 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4425 0.0005 34 1 4.0199 -0.5873 0.7125 35 1 3.1809 -2.0707 0.1986 36 1 5.4063 -2.7357 1.5648 37 1 4.4691 -4.0706 3.8701 38 1 5.3086 -2.5874 4.3836 39 1 5.9712 -6.1343 3.0911 40 1 7.7764 -1.3909 2.7818 41 1 7.5575 -1.6066 4.5409 42 1 7.7827 1.2098 4.9650 43 1 10.1908 -2.4056 1.9236 44 1 11.4494 -2.4316 3.1831 45 1 10.5888 -4.7262 2.3831 46 1 10.5843 -4.4528 4.1428 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128269806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:17 Heat of formation + Delta-G solvation = -3.705298 kcal Electronic energy + Delta-G solvation = -27547.208067 eV Core-core repulsion = 23666.538462 eV Total energy + Delta-G solvation = -3880.669605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.43207 -40.69881 -38.95443 -37.96587 -36.10434 -34.64013 -33.70567 -32.93794 -31.83387 -30.65476 -28.82650 -28.05109 -27.60237 -25.90748 -25.07112 -23.31375 -22.22100 -21.64574 -21.54635 -19.98776 -18.54413 -18.39738 -18.02832 -17.41563 -17.06370 -16.82147 -16.60118 -16.26825 -15.66737 -15.60384 -15.39965 -15.22528 -14.93779 -14.72481 -14.52231 -14.18443 -13.94640 -13.77910 -13.45173 -13.34571 -13.09283 -13.03109 -12.95604 -12.86134 -12.71969 -12.61220 -12.37600 -12.32575 -12.03668 -11.92426 -11.64810 -11.59683 -10.91905 -10.77007 -10.61692 -10.06656 -10.04255 -9.39433 -8.95469 -7.99390 -5.42726 0.92270 1.45300 1.48969 1.53333 1.55016 1.62539 1.65137 2.18957 2.44625 3.12468 3.19992 3.43229 3.60794 3.79172 3.83714 4.03737 4.12858 4.15705 4.19226 4.22796 4.24560 4.30690 4.35723 4.37850 4.47647 4.75379 4.76526 4.79104 4.85205 4.87976 4.92069 4.93930 4.96981 5.02405 5.23928 5.30916 5.35503 5.36782 5.44450 5.57912 5.75657 6.09023 6.19757 6.20514 6.62465 6.80378 6.98717 7.27726 7.65309 8.16110 9.09579 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.003645 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.242643 B = 7679.140184 C = 9473.872883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 C -0.177 4.177 4 O -0.393 6.393 5 C 0.048 3.952 6 C 0.508 3.492 7 O -0.578 6.578 8 N -0.707 5.707 9 C 0.218 3.782 10 C -0.274 4.274 11 C 0.068 3.932 12 N -0.326 5.326 13 N -0.367 5.367 14 C 0.096 3.904 15 C 0.249 3.751 16 N -0.616 5.616 17 C -0.269 4.269 18 H 0.079 0.921 19 C -0.041 4.041 20 N -0.930 5.930 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.296 1.296 24 H -0.283 1.283 25 C 0.128 3.872 26 C 0.117 3.883 27 H 0.049 0.951 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.411 0.589 37 H 0.084 0.916 38 H 0.042 0.958 39 H 0.216 0.784 40 H 0.037 0.963 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.042 0.958 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.381 -5.704 -13.077 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 C -0.234 4.234 4 O -0.312 6.312 5 C -0.031 4.031 6 C 0.295 3.705 7 O -0.457 6.457 8 N -0.360 5.360 9 C 0.094 3.906 10 C -0.286 4.286 11 C -0.118 4.118 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.035 4.035 15 C 0.122 3.878 16 N -0.339 5.339 17 C -0.398 4.398 18 H 0.097 0.903 19 C -0.237 4.237 20 N -0.575 5.575 21 Si 0.793 3.207 22 H -0.196 1.196 23 H -0.223 1.223 24 H -0.209 1.209 25 C 0.002 3.998 26 C -0.006 4.006 27 H 0.068 0.932 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.112 0.888 35 H 0.132 0.868 36 H 0.247 0.753 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.232 0.768 40 H 0.055 0.945 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.131 0.869 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.959 -6.376 -12.370 15.559 hybrid contribution 0.068 1.352 0.794 1.569 sum -6.891 -5.025 -11.575 14.378 Atomic orbital electron populations 1.21875 0.92739 1.02816 1.03040 1.22434 0.95839 0.92658 0.87671 1.22331 1.01483 0.96645 1.02961 1.88035 1.35337 1.70350 1.37485 1.22320 0.88127 0.98105 0.94575 1.20891 0.80911 0.78375 0.90356 1.90688 1.53763 1.61616 1.39628 1.45952 1.21396 1.53288 1.15346 1.19136 0.91233 0.94746 0.85527 1.19503 0.93342 0.94515 1.21288 1.24254 0.93907 0.95614 0.98054 1.77171 1.07166 1.04217 1.26059 1.48689 1.07199 1.04406 1.54513 1.22216 0.89884 0.94508 0.96924 1.19357 0.84782 0.83863 0.99790 1.44428 1.01001 1.51149 1.37357 1.19455 1.02857 1.04927 1.12578 0.90306 1.25699 0.98886 0.97258 1.01906 1.70069 1.21778 1.26928 1.38758 0.85387 0.77673 0.77520 0.80158 1.19566 1.22279 1.20888 1.21438 0.96833 0.87788 0.93779 1.22543 0.74701 0.99655 1.03682 0.93160 0.88697 0.92128 0.89623 0.89269 0.93330 0.92777 0.88835 0.86783 0.75315 0.89797 0.94013 0.76801 0.94505 0.91155 0.93875 0.94009 0.88278 0.86906 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.56 71.98 0.69 -1.69 16 2 C 0.07 1.31 3.34 30.59 0.10 1.41 16 3 C -0.18 -3.15 9.53 71.98 0.69 -2.46 16 4 O -0.39 -10.75 9.52 -129.94 -1.24 -11.99 16 5 C 0.05 1.10 6.23 71.24 0.44 1.55 16 6 C 0.51 15.99 7.91 87.66 0.69 16.68 16 7 O -0.58 -24.05 16.50 16.00 0.26 -23.78 16 8 N -0.71 -20.06 5.55 -466.79 -2.59 -22.65 16 9 C 0.22 7.01 5.95 85.63 0.51 7.52 16 10 C -0.27 -9.07 5.46 -20.24 -0.11 -9.18 16 11 C 0.07 1.99 11.97 85.26 1.02 3.01 16 12 N -0.33 -10.97 12.61 -56.80 -0.72 -11.69 16 13 N -0.37 -13.21 4.03 -334.03 -1.35 -14.56 16 14 C 0.10 3.71 6.71 41.31 0.28 3.99 16 15 C 0.25 11.40 5.11 85.55 0.44 11.83 16 16 N -0.62 -28.49 3.01 -701.15 -2.11 -30.61 16 17 C -0.27 -13.73 9.67 84.03 0.81 -12.92 16 18 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16 19 C -0.04 -2.18 5.00 84.86 0.42 -1.76 16 20 N -0.93 -52.25 11.07 21.65 0.24 -52.01 16 21 Si 0.96 43.44 29.58 68.60 2.03 45.47 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 C 0.13 4.55 6.49 86.35 0.56 5.11 16 26 C 0.12 3.66 7.44 86.46 0.64 4.30 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.09 1.13 7.79 -2.39 -0.02 1.12 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.01 7.87 -2.39 -0.02 0.99 16 34 H 0.09 1.88 7.87 -2.39 -0.02 1.86 16 35 H 0.11 1.73 8.09 -2.38 -0.02 1.71 16 36 H 0.41 9.72 8.46 -92.71 -0.78 8.94 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.22 4.39 8.06 -2.91 -0.02 4.37 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 41 H 0.07 3.75 6.46 -2.39 -0.02 3.74 16 42 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 3.18 7.94 -2.39 -0.02 3.16 16 45 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -71.75 381.85 1.91 -69.84 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.20 Total: 24.57 kcal Atomic # 6 Polarization: 20.22 SS G_CDS: 7.19 Total: 27.41 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -6.52 Total: -131.51 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.97 Total: -35.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.75 1.91 -69.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128269806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.132 kcal (2) G-P(sol) polarization free energy of solvation -71.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds