Wall clock time and date at job start Tue Mar 31 2020 13:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 N 1.46504 * 109.47234 * 119.99770 * 2 1 3 5 5 C 1.35526 * 125.67938 * 294.92500 * 4 2 1 6 6 C 1.35450 * 108.87236 * 179.97438 * 5 4 2 7 7 C 1.39839 * 107.86604 * 0.23248 * 6 5 4 8 8 C 1.37655 * 125.67329 * 114.89016 * 4 2 1 9 9 C 1.46681 * 126.23645 * 0.02683 * 8 4 2 10 10 O 1.21693 * 119.99748 * 4.98994 * 9 8 4 11 11 N 1.34770 * 119.99793 * 184.98722 * 9 8 4 12 12 C 1.46501 * 119.99611 * 185.09319 * 11 9 8 13 13 C 1.53011 * 109.46820 * 180.02562 * 12 11 9 14 14 N 1.46902 * 109.46876 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99932 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46887 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00486 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99842 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00172 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00169 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00261 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00324 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46867 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47386 * 119.99669 * 23 21 19 26 26 H 1.48490 * 109.47256 * 240.00328 * 23 21 19 27 27 H 1.09003 * 109.47254 * 59.99855 * 1 2 3 28 28 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46879 * 300.00029 * 1 2 3 30 30 H 1.08999 * 109.47101 * 239.99605 * 2 1 3 31 31 H 1.09004 * 109.46738 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46933 * 299.99737 * 3 2 1 33 33 H 1.08991 * 109.47295 * 60.00128 * 3 2 1 34 34 H 1.07998 * 125.56451 * 359.97438 * 5 4 2 35 35 H 1.08001 * 126.06942 * 179.97438 * 6 5 4 36 36 H 1.07993 * 126.45997 * 179.75951 * 7 6 5 37 37 H 0.96998 * 120.00203 * 5.09351 * 11 9 8 38 38 H 1.08994 * 109.47123 * 299.99659 * 12 11 9 39 39 H 1.09001 * 109.47293 * 60.00526 * 12 11 9 40 40 H 1.08994 * 109.46976 * 299.99728 * 13 12 11 41 41 H 1.09001 * 109.46776 * 60.00187 * 13 12 11 42 42 H 1.00905 * 110.99521 * 56.04791 * 14 13 12 43 43 H 1.08992 * 109.47291 * 300.00268 * 15 14 13 44 44 H 1.09001 * 109.46893 * 60.00164 * 15 14 13 45 45 H 0.97001 * 119.99694 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99770 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.8445 -0.2759 2.4747 6 6 2.4318 -1.1675 3.3082 7 6 3.0002 -2.1769 2.5251 8 6 2.7297 -1.8690 1.2086 9 6 3.1316 -2.6516 0.0349 10 8 2.9149 -2.2251 -1.0840 11 7 3.7409 -3.8429 0.1958 12 6 4.2423 -4.5727 -0.9713 13 6 4.8843 -5.8846 -0.5154 14 7 5.3865 -6.6167 -1.6858 15 6 6.0116 -7.8843 -1.2854 16 6 6.5142 -8.6052 -2.5096 17 8 6.3658 -8.1119 -3.6077 18 7 7.1276 -9.7988 -2.3845 19 6 7.5843 -10.4549 -3.4982 20 1 7.4522 -10.0156 -4.4759 21 6 8.2173 -11.6851 -3.3691 22 7 8.3776 -12.2199 -2.1795 23 14 8.8402 -12.5788 -4.8865 24 1 8.5390 -11.7707 -6.0955 25 1 10.3080 -12.7765 -4.7770 26 1 8.1695 -13.8993 -4.9935 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.3227 0.6193 2.7792 35 1 2.4601 -1.1071 4.3862 36 1 3.5461 -3.0369 2.8838 37 1 3.8474 -4.2171 1.0844 38 1 3.4152 -4.7891 -1.6474 39 1 4.9848 -3.9649 -1.4885 40 1 5.7114 -5.6685 0.1609 41 1 4.1415 -6.4922 0.0015 42 1 6.0288 -6.0495 -2.2187 43 1 6.8468 -7.6818 -0.6151 44 1 5.2771 -8.5058 -0.7733 45 1 7.2460 -10.1935 -1.5064 46 1 8.8198 -13.0786 -2.0893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151213722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:56 Heat of formation + Delta-G solvation = -27.865741 kcal Electronic energy + Delta-G solvation = -25772.724546 eV Core-core repulsion = 21891.007265 eV Total energy + Delta-G solvation = -3881.717281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79304 -39.33996 -38.31004 -36.34582 -35.78561 -34.34543 -33.74377 -31.25067 -30.40284 -30.16666 -28.65888 -27.76490 -26.02580 -24.10819 -23.12221 -22.44609 -22.02155 -20.59531 -19.61495 -19.24551 -18.01042 -17.86889 -16.38457 -16.16334 -15.98900 -15.77933 -15.51367 -15.09541 -14.81764 -14.52157 -14.38356 -14.30942 -13.91369 -13.81732 -13.42265 -13.18092 -13.12069 -12.97019 -12.69842 -12.59381 -12.46407 -12.40186 -11.92560 -11.75533 -11.52951 -11.49894 -11.46011 -11.42734 -11.05213 -10.34197 -10.22988 -10.09466 -9.52680 -9.33197 -9.05930 -8.50930 -8.49412 -8.13498 -7.96976 -6.42408 -3.83116 1.21033 2.29970 2.45803 3.03362 3.16453 3.16632 3.27215 3.34761 3.89510 4.11787 4.22913 4.35559 4.49315 4.50376 4.65258 4.76328 4.86919 4.97990 4.98277 5.02420 5.06255 5.17404 5.21853 5.24149 5.25672 5.38528 5.45070 5.56453 5.66696 5.72385 5.76195 5.79855 5.88637 5.93440 5.95159 6.17004 6.25217 6.46999 6.72585 6.93444 7.08819 7.27220 7.55188 7.56357 7.96781 8.05779 8.60370 9.17419 9.53314 10.04619 10.75376 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.001649 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.528070 B =16973.290115 C =17555.155878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.102 3.898 3 C -0.159 4.159 4 N -0.400 5.400 5 C 0.017 3.983 6 C -0.209 4.209 7 C -0.142 4.142 8 C -0.052 4.052 9 C 0.589 3.411 10 O -0.548 6.548 11 N -0.715 5.715 12 C 0.123 3.877 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.052 3.948 16 C 0.440 3.560 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.164 0.836 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.403 0.597 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.078 0.922 42 H 0.352 0.648 43 H 0.045 0.955 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.995 23.938 14.249 30.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 C -0.217 4.217 4 N -0.073 5.073 5 C -0.119 4.119 6 C -0.233 4.233 7 C -0.168 4.168 8 C -0.166 4.166 9 C 0.377 3.623 10 O -0.427 6.427 11 N -0.367 5.367 12 C -0.001 4.001 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.150 0.850 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.182 0.818 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.237 0.763 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.097 0.903 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.106 0.894 45 H 0.226 0.774 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.859 24.260 12.227 30.497 hybrid contribution 1.296 -0.664 0.910 1.717 sum -12.562 23.595 13.137 29.785 Atomic orbital electron populations 1.22149 0.93462 1.03137 1.02937 1.22012 0.95392 0.94312 0.88163 1.22137 1.02228 0.94269 1.03028 1.44208 1.39334 1.17179 1.06551 1.21906 1.05566 1.01724 0.82687 1.20805 1.06090 0.97091 0.99302 1.21350 1.03782 1.00927 0.90746 1.20029 1.09066 0.92786 0.94685 1.16964 0.77356 0.80793 0.87143 1.90737 1.56005 1.70260 1.25732 1.45528 1.59861 1.20162 1.11139 1.21311 0.99693 0.91693 0.87376 1.22083 0.99037 0.93861 0.93146 1.59943 1.44077 1.05562 1.20260 1.21672 0.97911 0.91741 0.96721 1.19778 0.84110 0.83618 0.89962 1.90533 1.61014 1.67691 1.27369 1.41862 1.50937 1.17100 1.10117 1.19766 1.33564 1.00932 0.88596 0.87822 1.25271 0.97553 0.97049 0.98113 1.69622 1.43519 1.18948 1.22221 0.85789 0.78202 0.79063 0.81232 1.19199 1.20778 1.20734 0.90464 0.91788 0.92089 0.84986 0.91736 0.90408 0.92029 0.81840 0.84103 0.83934 0.76252 0.89920 0.91200 0.94780 0.90337 0.82813 0.93665 0.89414 0.77447 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.30 37.16 0.35 -0.70 16 2 C 0.10 0.85 3.48 -67.93 -0.24 0.62 16 3 C -0.16 -0.99 9.16 37.16 0.34 -0.65 16 4 N -0.40 -3.73 2.64 -105.81 -0.28 -4.01 16 5 C 0.02 0.13 10.33 -16.92 -0.17 -0.05 16 6 C -0.21 -1.63 10.81 -39.98 -0.43 -2.06 16 7 C -0.14 -1.22 10.35 -39.12 -0.40 -1.62 16 8 C -0.05 -0.55 6.89 -81.98 -0.56 -1.11 16 9 C 0.59 7.13 7.77 -12.85 -0.10 7.03 16 10 O -0.55 -8.24 14.37 5.19 0.07 -8.17 16 11 N -0.72 -7.11 5.53 -61.61 -0.34 -7.45 16 12 C 0.12 1.40 5.94 -4.04 -0.02 1.38 16 13 C 0.05 0.55 5.80 -3.82 -0.02 0.53 16 14 N -0.67 -10.46 6.13 -115.06 -0.70 -11.16 16 15 C 0.05 0.90 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.35 7.82 -10.98 -0.09 10.26 16 17 O -0.58 -15.87 15.78 5.55 0.09 -15.79 16 18 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 19 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.74 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.33 8.01 -51.93 -0.42 -0.09 16 30 H 0.13 1.45 5.33 -51.93 -0.28 1.17 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 34 H 0.16 0.78 7.91 -52.49 -0.42 0.37 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.14 0.89 7.49 -52.49 -0.39 0.50 16 37 H 0.40 2.92 7.42 -40.82 -0.30 2.61 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.35 5.73 8.43 -39.29 -0.33 5.40 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 46 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 387.79 15.07 5.84 5.84 Total: -1.00 -34.02 387.79 -8.32 -42.34 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.02 Total: 13.90 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.63 Total: 6.47 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.66 Total: -60.65 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.16 Total: -23.96 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.02 -8.32 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151213722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.475 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds