Wall clock time and date at job start Tue Mar 31 2020 13:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 N 1.46504 * 109.47234 * 119.99770 * 2 1 3 5 5 C 1.35526 * 125.67938 * 294.92500 * 4 2 1 6 6 C 1.35450 * 108.87236 * 179.97438 * 5 4 2 7 7 C 1.39839 * 107.86604 * 0.23248 * 6 5 4 8 8 C 1.37655 * 125.67329 * 114.89016 * 4 2 1 9 9 C 1.46681 * 126.23645 * 0.02683 * 8 4 2 10 10 O 1.21693 * 119.99748 * 4.98994 * 9 8 4 11 11 N 1.34770 * 119.99793 * 184.98722 * 9 8 4 12 12 C 1.46501 * 119.99611 * 185.09319 * 11 9 8 13 13 C 1.53011 * 109.46820 * 180.02562 * 12 11 9 14 14 N 1.46902 * 109.46876 * 179.97438 * 13 12 11 15 15 C 1.46901 * 110.99932 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46887 * 180.02562 * 15 14 13 17 17 O 1.21287 * 120.00486 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99842 * 180.02562 * 16 15 14 19 19 C 1.37088 * 120.00172 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00169 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00261 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99691 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00324 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46867 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47386 * 119.99669 * 23 21 19 26 26 H 1.48490 * 109.47256 * 240.00328 * 23 21 19 27 27 H 1.09003 * 109.47254 * 59.99855 * 1 2 3 28 28 H 1.09004 * 109.47140 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46879 * 300.00029 * 1 2 3 30 30 H 1.08999 * 109.47101 * 239.99605 * 2 1 3 31 31 H 1.09004 * 109.46738 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46933 * 299.99737 * 3 2 1 33 33 H 1.08991 * 109.47295 * 60.00128 * 3 2 1 34 34 H 1.07998 * 125.56451 * 359.97438 * 5 4 2 35 35 H 1.08001 * 126.06942 * 179.97438 * 6 5 4 36 36 H 1.07993 * 126.45997 * 179.75951 * 7 6 5 37 37 H 0.96998 * 120.00203 * 5.09351 * 11 9 8 38 38 H 1.08994 * 109.47123 * 299.99659 * 12 11 9 39 39 H 1.09001 * 109.47293 * 60.00526 * 12 11 9 40 40 H 1.08994 * 109.46976 * 299.99728 * 13 12 11 41 41 H 1.09001 * 109.46776 * 60.00187 * 13 12 11 42 42 H 1.00905 * 110.99521 * 56.04791 * 14 13 12 43 43 H 1.08992 * 109.47291 * 300.00268 * 15 14 13 44 44 H 1.09001 * 109.46893 * 60.00164 * 15 14 13 45 45 H 0.97001 * 119.99694 * 359.97438 * 18 16 15 46 46 H 0.97000 * 119.99770 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.8445 -0.2759 2.4747 6 6 2.4318 -1.1675 3.3082 7 6 3.0002 -2.1769 2.5251 8 6 2.7297 -1.8690 1.2086 9 6 3.1316 -2.6516 0.0349 10 8 2.9149 -2.2251 -1.0840 11 7 3.7409 -3.8429 0.1958 12 6 4.2423 -4.5727 -0.9713 13 6 4.8843 -5.8846 -0.5154 14 7 5.3865 -6.6167 -1.6858 15 6 6.0116 -7.8843 -1.2854 16 6 6.5142 -8.6052 -2.5096 17 8 6.3658 -8.1119 -3.6077 18 7 7.1276 -9.7988 -2.3845 19 6 7.5843 -10.4549 -3.4982 20 1 7.4522 -10.0156 -4.4759 21 6 8.2173 -11.6851 -3.3691 22 7 8.3776 -12.2199 -2.1795 23 14 8.8402 -12.5788 -4.8865 24 1 8.5390 -11.7707 -6.0955 25 1 10.3080 -12.7765 -4.7770 26 1 8.1695 -13.8993 -4.9935 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.3227 0.6193 2.7792 35 1 2.4601 -1.1071 4.3862 36 1 3.5461 -3.0369 2.8838 37 1 3.8474 -4.2171 1.0844 38 1 3.4152 -4.7891 -1.6474 39 1 4.9848 -3.9649 -1.4885 40 1 5.7114 -5.6685 0.1609 41 1 4.1415 -6.4922 0.0015 42 1 6.0288 -6.0495 -2.2187 43 1 6.8468 -7.6818 -0.6151 44 1 5.2771 -8.5058 -0.7733 45 1 7.2460 -10.1935 -1.5064 46 1 8.8198 -13.0786 -2.0893 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151213722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:55 Heat of formation + Delta-G solvation = -53.495889 kcal Electronic energy + Delta-G solvation = -25773.835953 eV Core-core repulsion = 21891.007265 eV Total energy + Delta-G solvation = -3882.828687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.44876 -40.30548 -40.07068 -37.49276 -36.45153 -35.97028 -35.17657 -33.27125 -31.35721 -30.75860 -29.64174 -28.26668 -27.58782 -25.68437 -23.94680 -23.24602 -22.88294 -21.30066 -21.08553 -20.33653 -19.91065 -18.67815 -17.77901 -17.25522 -17.16279 -16.78065 -16.46359 -16.39980 -15.87716 -15.74162 -15.64239 -15.21602 -15.09713 -14.86761 -14.77480 -14.37775 -14.01103 -13.66717 -13.58750 -13.53038 -13.31637 -13.18836 -13.11129 -12.98535 -12.93501 -12.60308 -12.43510 -12.39745 -12.32216 -12.12029 -12.10643 -11.51743 -10.99608 -10.36945 -10.26386 -10.01561 -9.67334 -9.38918 -9.14897 -8.47119 -5.95624 0.47423 1.36696 1.42237 1.56099 1.61104 1.85049 2.04967 2.21865 2.32156 2.36667 3.02578 3.20331 3.54323 3.65768 3.73717 3.91888 3.94370 4.10147 4.14270 4.18646 4.32036 4.43171 4.45594 4.48199 4.50683 4.58672 4.61154 4.67075 4.73780 4.87194 4.91102 4.93810 5.02970 5.15215 5.22555 5.28706 5.35009 5.41349 5.83871 5.85269 6.06664 6.07771 6.31770 6.35849 6.49001 6.60088 7.12635 7.12789 7.56108 8.11783 8.70396 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.035321 B = 0.001649 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.528070 B =16973.290115 C =17555.155878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.097 3.903 3 C -0.152 4.152 4 N -0.408 5.408 5 C 0.024 3.976 6 C -0.220 4.220 7 C -0.134 4.134 8 C -0.091 4.091 9 C 0.583 3.417 10 O -0.589 6.589 11 N -0.702 5.702 12 C 0.132 3.868 13 C 0.059 3.941 14 N -0.686 5.686 15 C 0.068 3.932 16 C 0.435 3.565 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 0.993 3.007 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.194 0.806 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.418 0.582 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.346 0.654 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.398 0.602 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 24.553 16.755 32.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.004 4.004 3 C -0.209 4.209 4 N -0.081 5.081 5 C -0.112 4.112 6 C -0.243 4.243 7 C -0.160 4.160 8 C -0.204 4.204 9 C 0.373 3.627 10 O -0.472 6.472 11 N -0.354 5.354 12 C 0.007 3.993 13 C -0.070 4.070 14 N -0.319 5.319 15 C -0.064 4.064 16 C 0.223 3.777 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.211 0.789 35 H 0.181 0.819 36 H 0.181 0.819 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.165 0.835 43 H 0.092 0.908 44 H 0.128 0.872 45 H 0.232 0.768 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.200 24.850 14.800 32.221 hybrid contribution 1.358 -0.780 0.191 1.578 sum -12.842 24.070 14.991 31.129 Atomic orbital electron populations 1.22106 0.92101 1.02323 1.04451 1.22006 0.96444 0.94948 0.86994 1.22098 1.01141 0.93096 1.04604 1.44391 1.39349 1.17030 1.07368 1.22505 1.04520 1.02341 0.81830 1.21173 1.05908 0.96756 1.00472 1.21717 1.02843 1.01540 0.89944 1.20006 1.11622 0.94065 0.94693 1.17346 0.76955 0.81150 0.87270 1.90719 1.57795 1.71289 1.27377 1.45338 1.59124 1.19509 1.11415 1.21072 0.98574 0.91970 0.87634 1.22063 0.99958 0.93150 0.91862 1.59906 1.43920 1.05592 1.22451 1.21530 0.99370 0.91947 0.93588 1.20936 0.82382 0.82896 0.91510 1.90502 1.62239 1.68565 1.29904 1.41920 1.51547 1.17833 1.09654 1.19701 1.35825 1.02280 0.88631 0.90450 1.26027 0.97033 0.97099 1.01052 1.69672 1.43423 1.19364 1.23516 0.84874 0.78150 0.77856 0.77465 1.19967 1.19519 1.19584 0.89240 0.93704 0.90243 0.88282 0.93332 0.89197 0.90057 0.78876 0.81855 0.81880 0.74463 0.92208 0.92279 0.92260 0.88780 0.83536 0.90822 0.87246 0.76826 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.30 71.98 0.67 -1.22 16 2 C 0.10 1.63 3.48 44.99 0.16 1.78 16 3 C -0.15 -1.76 9.16 71.98 0.66 -1.10 16 4 N -0.41 -7.34 2.64 -488.67 -1.29 -8.62 16 5 C 0.02 0.31 10.33 83.48 0.86 1.17 16 6 C -0.22 -2.83 10.81 22.01 0.24 -2.60 16 7 C -0.13 -2.06 10.35 22.57 0.23 -1.82 16 8 C -0.09 -1.89 6.89 40.35 0.28 -1.62 16 9 C 0.58 14.55 7.77 86.45 0.67 15.22 16 10 O -0.59 -19.01 14.37 -4.33 -0.06 -19.07 16 11 N -0.70 -13.68 5.53 -467.07 -2.58 -16.27 16 12 C 0.13 3.03 5.94 86.38 0.51 3.54 16 13 C 0.06 1.22 5.80 86.31 0.50 1.72 16 14 N -0.69 -20.97 6.13 -517.93 -3.17 -24.14 16 15 C 0.07 2.22 6.17 85.56 0.53 2.74 16 16 C 0.44 20.62 7.82 87.65 0.69 21.31 16 17 O -0.63 -35.10 15.78 -3.05 -0.05 -35.15 16 18 N -0.57 -29.23 5.29 -306.99 -1.62 -30.85 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 22 N -0.92 -49.30 13.05 21.67 0.28 -49.01 16 23 Si 0.99 43.09 29.55 68.60 2.03 45.11 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.68 8.01 -2.38 -0.02 0.66 16 30 H 0.10 2.36 5.33 -2.39 -0.01 2.35 16 31 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.61 7.71 -2.39 -0.02 0.59 16 34 H 0.19 1.14 7.91 -2.91 -0.02 1.12 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.16 1.62 7.49 -2.91 -0.02 1.60 16 37 H 0.42 5.36 7.42 -92.71 -0.69 4.67 16 38 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.35 11.30 8.43 -89.69 -0.76 10.54 16 43 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 45 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 46 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -76.53 387.79 -0.35 -76.88 By element: Atomic # 1 Polarization: 41.62 SS G_CDS: -1.16 Total: 40.46 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 7.28 Total: 20.65 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -8.38 Total: -128.89 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.11 Total: -54.21 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Total: -76.53 -0.35 -76.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151213722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.388 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds