Wall clock time and date at job start Tue Mar 31 2020 12:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.09003 * 109.46950 * 305.47176 * 3 2 1 5 5 C 1.50696 * 109.47250 * 185.47068 * 3 2 1 6 6 H 1.08008 * 120.00027 * 244.81697 * 5 3 2 7 7 C 1.37877 * 120.00276 * 64.81205 * 5 3 2 8 8 N 1.31511 * 120.00441 * 185.74876 * 7 5 3 9 9 Si 1.86803 * 119.99660 * 5.75544 * 7 5 3 10 10 H 1.48503 * 109.46862 * 269.99540 * 9 7 5 11 11 H 1.48496 * 109.47299 * 29.99661 * 9 7 5 12 12 H 1.48503 * 109.46965 * 149.99973 * 9 7 5 13 13 N 1.46501 * 109.47285 * 65.46855 * 3 2 1 14 14 C 1.38611 * 120.00128 * 275.00400 * 13 3 2 15 15 C 1.39256 * 120.49134 * 359.97438 * 14 13 3 16 16 C 1.39006 * 118.27268 * 180.02562 * 15 14 13 17 17 N 1.39100 * 120.47535 * 179.97438 * 16 15 14 18 18 C 1.34775 * 119.99999 * 185.58015 * 17 16 15 19 19 O 1.21499 * 120.00078 * 5.08579 * 18 17 16 20 20 O 1.34636 * 119.99997 * 185.08958 * 18 17 16 21 21 C 1.45199 * 116.99728 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47324 * 60.00129 * 21 20 18 23 23 C 1.53005 * 109.46973 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47379 * 300.00031 * 21 20 18 25 25 N 1.33131 * 119.04515 * 0.02562 * 16 15 14 26 26 C 1.31720 * 120.90168 * 359.97438 * 25 16 15 27 27 N 1.31766 * 121.90252 * 359.71916 * 26 25 16 28 28 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47074 * 299.99731 * 1 2 3 30 30 H 1.08996 * 109.46676 * 60.00247 * 1 2 3 31 31 H 1.08998 * 109.47537 * 239.99677 * 2 1 3 32 32 H 1.09000 * 109.47161 * 119.99769 * 2 1 3 33 33 H 0.96999 * 119.99703 * 354.99201 * 8 7 5 34 34 H 0.96998 * 119.99701 * 95.00303 * 13 3 2 35 35 H 1.08009 * 120.86509 * 359.97438 * 15 14 13 36 36 H 0.97007 * 120.00657 * 5.57996 * 17 16 15 37 37 H 1.09008 * 109.46857 * 59.99685 * 22 21 20 38 38 H 1.09003 * 109.47657 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47367 * 300.00508 * 22 21 20 40 40 H 1.09000 * 109.47309 * 60.00099 * 23 21 20 41 41 H 1.09003 * 109.47176 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.46603 * 299.99805 * 23 21 20 43 43 H 1.09000 * 109.46897 * 60.00625 * 24 21 20 44 44 H 1.09003 * 109.46842 * 179.97438 * 24 21 20 45 45 H 1.09000 * 109.47228 * 300.00100 * 24 21 20 46 46 H 1.07991 * 119.04684 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5409 1.4446 -0.1355 6 1 4.1554 1.8163 0.6713 7 6 4.1297 0.9721 -1.2891 8 7 5.4385 0.8681 -1.3645 9 14 3.0683 0.4797 -2.7453 10 1 2.7118 -0.9577 -2.6343 11 1 1.8291 1.2978 -2.7537 12 1 3.8203 0.7072 -4.0054 13 7 1.6622 2.0941 1.2565 14 6 0.4112 2.6767 1.3862 15 6 -0.4942 2.6492 0.3286 16 6 -1.7357 3.2481 0.5088 17 7 -2.6747 3.2477 -0.5174 18 6 -3.8300 3.9268 -0.3738 19 8 -4.0125 4.6139 0.6115 20 8 -4.7820 3.8437 -1.3222 21 6 -6.0008 4.6013 -1.1010 22 6 -5.6628 6.0891 -0.9870 23 6 -6.9570 4.3835 -2.2754 24 6 -6.6671 4.1291 0.1929 25 7 -2.0125 3.8229 1.6773 26 6 -1.1293 3.8285 2.6545 27 7 0.0556 3.2667 2.5254 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.9934 1.1912 -0.6374 34 1 2.2874 2.1177 1.9977 35 1 -0.2383 2.1755 -0.6077 36 1 -2.4982 2.7588 -1.3364 37 1 -5.1881 6.4255 -1.9088 38 1 -6.5778 6.6580 -0.8213 39 1 -4.9817 6.2440 -0.1502 40 1 -7.1978 3.3235 -2.3562 41 1 -7.8717 4.9526 -2.1095 42 1 -6.4825 4.7197 -3.1973 43 1 -5.9861 4.2840 1.0297 44 1 -7.5818 4.6983 0.3591 45 1 -6.9079 3.0692 0.1117 46 1 -1.3855 4.3030 3.5901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:37 Heat of formation + Delta-G solvation = -16.416031 kcal Electronic energy + Delta-G solvation = -27975.812689 eV Core-core repulsion = 24094.591904 eV Total energy + Delta-G solvation = -3881.220784 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.24136 -40.37756 -37.79130 -36.87419 -35.22871 -34.20920 -33.22421 -32.11582 -30.85597 -30.28565 -27.65560 -27.58781 -27.09634 -24.34074 -23.95436 -22.57172 -21.74948 -20.59305 -19.82823 -18.85982 -18.14598 -17.66332 -16.78864 -16.37359 -16.33263 -15.67215 -15.06082 -14.78652 -14.71731 -14.50262 -14.26879 -14.07117 -13.68866 -13.54378 -13.30084 -12.80764 -12.74326 -12.58624 -12.42878 -12.20736 -12.11878 -12.11247 -11.96493 -11.51434 -11.38208 -11.17310 -10.89222 -10.74469 -10.51735 -10.44090 -10.29592 -10.13931 -9.90352 -9.72706 -8.98359 -8.74616 -8.68606 -8.63774 -7.47322 -6.69009 -4.38371 1.36341 1.82903 1.86179 2.88395 3.20226 3.24950 3.40150 3.68549 3.76718 4.25758 4.36240 4.47186 4.52087 4.61544 4.66146 4.99237 5.03659 5.21436 5.26576 5.29688 5.36165 5.44390 5.50598 5.53740 5.63421 5.67378 5.73583 5.75129 5.87295 5.91617 6.05741 6.08786 6.19343 6.26861 6.30937 6.42501 6.55247 6.62892 6.81003 6.95071 7.06658 7.36072 7.42593 7.89822 8.13247 8.26029 8.32183 8.60945 8.78867 9.33330 10.71289 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003236 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.940998 B = 8651.616728 C = 9579.148341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.143 4.143 3 C 0.246 3.754 4 H 0.043 0.957 5 C -0.611 4.611 6 H 0.065 0.935 7 C 0.036 3.964 8 N -0.900 5.900 9 Si 1.051 2.949 10 H -0.279 1.279 11 H -0.277 1.277 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.462 3.538 15 C -0.328 4.328 16 C 0.431 3.569 17 N -0.634 5.634 18 C 0.644 3.356 19 O -0.501 6.501 20 O -0.366 6.366 21 C 0.137 3.863 22 C -0.185 4.185 23 C -0.140 4.140 24 C -0.184 4.184 25 N -0.565 5.565 26 C 0.358 3.642 27 N -0.605 5.605 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.271 0.729 34 H 0.404 0.596 35 H 0.150 0.850 36 H 0.423 0.577 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.202 4.725 -0.718 22.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C 0.142 3.858 4 H 0.060 0.940 5 C -0.649 4.649 6 H 0.083 0.917 7 C -0.171 4.171 8 N -0.533 5.533 9 Si 0.880 3.120 10 H -0.205 1.205 11 H -0.203 1.203 12 H -0.212 1.212 13 N -0.299 5.299 14 C 0.216 3.784 15 C -0.360 4.360 16 C 0.197 3.803 17 N -0.287 5.287 18 C 0.396 3.604 19 O -0.383 6.383 20 O -0.281 6.281 21 C 0.100 3.900 22 C -0.242 4.242 23 C -0.198 4.198 24 C -0.242 4.242 25 N -0.292 5.292 26 C 0.067 3.933 27 N -0.333 5.333 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.240 0.760 35 H 0.167 0.833 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.523 4.747 -1.223 23.050 hybrid contribution 0.535 -0.008 0.667 0.855 sum -21.988 4.739 -0.555 22.499 Atomic orbital electron populations 1.22247 0.97841 1.00412 1.01038 1.22374 0.93523 1.00116 1.02187 1.19382 0.96788 0.88221 0.81436 0.93992 1.22112 0.89264 1.48501 1.04997 0.91687 1.25730 0.97574 0.93798 0.99990 1.70803 1.04201 1.41864 1.36411 0.83911 0.75064 0.76990 0.76020 1.20550 1.20303 1.21173 1.45176 1.10885 1.55726 1.18080 1.18377 0.86603 0.85712 0.87674 1.21618 0.94831 1.15826 1.03753 1.17763 0.85557 0.90209 0.86736 1.41948 1.15247 1.52379 1.19097 1.18067 0.80605 0.79867 0.81853 1.91012 1.78371 1.39398 1.29492 1.86297 1.26691 1.68123 1.47016 1.22093 0.80428 0.90787 0.96654 1.22526 1.03561 0.93960 1.04136 1.21865 0.97824 1.03182 0.96885 1.22525 1.01882 1.01516 0.98236 1.68236 1.35947 1.24771 1.00220 1.24401 0.83103 0.89707 0.96121 1.68011 1.21510 1.18985 1.24786 0.93887 0.92707 0.93224 0.91752 0.91923 0.91860 0.76006 0.83264 0.73996 0.92140 0.91097 0.89210 0.91436 0.90114 0.91428 0.89098 0.91136 0.92181 0.79194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.23 37.16 0.31 -2.27 16 2 C -0.14 -2.79 5.20 -26.73 -0.14 -2.93 16 3 C 0.25 5.24 1.78 -69.09 -0.12 5.11 16 4 H 0.04 0.92 5.03 -51.93 -0.26 0.65 16 5 C -0.61 -15.59 9.10 -34.44 -0.31 -15.91 16 6 H 0.07 1.79 7.95 -52.48 -0.42 1.37 16 7 C 0.04 0.95 5.43 -17.82 -0.10 0.85 16 8 N -0.90 -25.92 13.70 55.43 0.76 -25.16 16 9 Si 1.05 23.12 25.32 -169.99 -4.30 18.82 16 10 H -0.28 -5.79 6.75 56.52 0.38 -5.41 16 11 H -0.28 -5.49 6.37 56.52 0.36 -5.13 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.67 -13.21 5.17 -54.96 -0.28 -13.50 16 14 C 0.46 8.53 6.55 -154.73 -1.01 7.52 16 15 C -0.33 -5.54 6.65 -38.92 -0.26 -5.80 16 16 C 0.43 7.02 7.43 -154.35 -1.15 5.87 16 17 N -0.63 -8.65 5.39 -15.77 -0.09 -8.73 16 18 C 0.64 9.13 8.01 54.05 0.43 9.56 16 19 O -0.50 -8.14 10.22 -19.27 -0.20 -8.33 16 20 O -0.37 -4.38 9.94 -40.31 -0.40 -4.78 16 21 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 22 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 23 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 24 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 25 N -0.57 -9.68 8.08 -13.81 -0.11 -9.80 16 26 C 0.36 5.74 12.28 -92.24 -1.13 4.61 16 27 N -0.60 -10.73 10.47 -13.87 -0.15 -10.88 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.92 5.37 -51.93 -0.28 0.64 16 30 H 0.05 0.74 6.38 -51.93 -0.33 0.41 16 31 H 0.06 1.30 4.33 -51.93 -0.22 1.07 16 32 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.27 7.79 8.72 -40.82 -0.36 7.44 16 34 H 0.40 7.90 8.65 -40.82 -0.35 7.55 16 35 H 0.15 2.43 4.12 -52.48 -0.22 2.21 16 36 H 0.42 4.51 8.83 -40.82 -0.36 4.15 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.19 2.37 8.06 -52.49 -0.42 1.94 16 LS Contribution 358.35 15.07 5.40 5.40 Total: -1.00 -30.10 358.35 -8.50 -38.60 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.49 Total: 14.10 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -2.64 Total: 4.27 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.13 Total: -68.07 kcal Atomic # 8 Polarization: -12.52 SS G_CDS: -0.60 Total: -13.12 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.30 Total: 18.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.10 -8.50 -38.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.182 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds