Wall clock time and date at job start Tue Mar 31 2020 12:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47172 * 2 1 4 4 H 1.09003 * 109.46950 * 305.47176 * 3 2 1 5 5 C 1.50696 * 109.47250 * 185.47068 * 3 2 1 6 6 H 1.08008 * 120.00027 * 244.81697 * 5 3 2 7 7 C 1.37877 * 120.00276 * 64.81205 * 5 3 2 8 8 N 1.31511 * 120.00441 * 185.74876 * 7 5 3 9 9 Si 1.86803 * 119.99660 * 5.75544 * 7 5 3 10 10 H 1.48503 * 109.46862 * 269.99540 * 9 7 5 11 11 H 1.48496 * 109.47299 * 29.99661 * 9 7 5 12 12 H 1.48503 * 109.46965 * 149.99973 * 9 7 5 13 13 N 1.46501 * 109.47285 * 65.46855 * 3 2 1 14 14 C 1.38611 * 120.00128 * 275.00400 * 13 3 2 15 15 C 1.39256 * 120.49134 * 359.97438 * 14 13 3 16 16 C 1.39006 * 118.27268 * 180.02562 * 15 14 13 17 17 N 1.39100 * 120.47535 * 179.97438 * 16 15 14 18 18 C 1.34775 * 119.99999 * 185.58015 * 17 16 15 19 19 O 1.21499 * 120.00078 * 5.08579 * 18 17 16 20 20 O 1.34636 * 119.99997 * 185.08958 * 18 17 16 21 21 C 1.45199 * 116.99728 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47324 * 60.00129 * 21 20 18 23 23 C 1.53005 * 109.46973 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47379 * 300.00031 * 21 20 18 25 25 N 1.33131 * 119.04515 * 0.02562 * 16 15 14 26 26 C 1.31720 * 120.90168 * 359.97438 * 25 16 15 27 27 N 1.31766 * 121.90252 * 359.71916 * 26 25 16 28 28 H 1.09003 * 109.46720 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47074 * 299.99731 * 1 2 3 30 30 H 1.08996 * 109.46676 * 60.00247 * 1 2 3 31 31 H 1.08998 * 109.47537 * 239.99677 * 2 1 3 32 32 H 1.09000 * 109.47161 * 119.99769 * 2 1 3 33 33 H 0.96999 * 119.99703 * 354.99201 * 8 7 5 34 34 H 0.96998 * 119.99701 * 95.00303 * 13 3 2 35 35 H 1.08009 * 120.86509 * 359.97438 * 15 14 13 36 36 H 0.97007 * 120.00657 * 5.57996 * 17 16 15 37 37 H 1.09008 * 109.46857 * 59.99685 * 22 21 20 38 38 H 1.09003 * 109.47657 * 179.97438 * 22 21 20 39 39 H 1.08999 * 109.47367 * 300.00508 * 22 21 20 40 40 H 1.09000 * 109.47309 * 60.00099 * 23 21 20 41 41 H 1.09003 * 109.47176 * 180.02562 * 23 21 20 42 42 H 1.09003 * 109.46603 * 299.99805 * 23 21 20 43 43 H 1.09000 * 109.46897 * 60.00625 * 24 21 20 44 44 H 1.09003 * 109.46842 * 179.97438 * 24 21 20 45 45 H 1.09000 * 109.47228 * 300.00100 * 24 21 20 46 46 H 1.07991 * 119.04684 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5989 1.9838 -0.8370 5 6 3.5409 1.4446 -0.1355 6 1 4.1554 1.8163 0.6713 7 6 4.1297 0.9721 -1.2891 8 7 5.4385 0.8681 -1.3645 9 14 3.0683 0.4797 -2.7453 10 1 2.7118 -0.9577 -2.6343 11 1 1.8291 1.2978 -2.7537 12 1 3.8203 0.7072 -4.0054 13 7 1.6622 2.0941 1.2565 14 6 0.4112 2.6767 1.3862 15 6 -0.4942 2.6492 0.3286 16 6 -1.7357 3.2481 0.5088 17 7 -2.6747 3.2477 -0.5174 18 6 -3.8300 3.9268 -0.3738 19 8 -4.0125 4.6139 0.6115 20 8 -4.7820 3.8437 -1.3222 21 6 -6.0008 4.6013 -1.1010 22 6 -5.6628 6.0891 -0.9870 23 6 -6.9570 4.3835 -2.2754 24 6 -6.6671 4.1291 0.1929 25 7 -2.0125 3.8229 1.6773 26 6 -1.1293 3.8285 2.6545 27 7 0.0556 3.2667 2.5254 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.9934 1.1912 -0.6374 34 1 2.2874 2.1177 1.9977 35 1 -0.2383 2.1755 -0.6077 36 1 -2.4982 2.7588 -1.3364 37 1 -5.1881 6.4255 -1.9088 38 1 -6.5778 6.6580 -0.8213 39 1 -4.9817 6.2440 -0.1502 40 1 -7.1978 3.3235 -2.3562 41 1 -7.8717 4.9526 -2.1095 42 1 -6.4825 4.7197 -3.1973 43 1 -5.9861 4.2840 1.0297 44 1 -7.5818 4.6983 0.3591 45 1 -6.9079 3.0692 0.1117 46 1 -1.3855 4.3030 3.5901 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:36 Heat of formation + Delta-G solvation = -35.723105 kcal Electronic energy + Delta-G solvation = -27976.649906 eV Core-core repulsion = 24094.591904 eV Total energy + Delta-G solvation = -3882.058002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.40145 -41.53831 -38.97024 -38.24148 -36.40489 -35.16778 -34.86436 -33.70946 -32.20904 -31.66868 -28.78317 -28.33355 -28.25993 -25.54988 -25.28951 -24.23627 -22.93173 -21.91373 -21.06915 -20.25896 -19.47284 -19.09247 -18.14553 -17.43571 -17.37728 -16.98920 -16.41668 -16.01419 -15.90507 -15.63765 -15.33994 -15.32906 -15.12367 -14.79648 -14.46504 -14.36965 -14.18943 -13.86773 -13.43143 -13.30399 -12.90609 -12.88518 -12.82633 -12.75021 -12.51455 -12.35812 -12.30578 -12.20160 -11.91631 -11.63556 -11.54703 -11.36824 -11.24568 -11.14138 -10.88957 -10.67892 -10.03869 -9.90823 -9.00609 -8.73961 -6.49971 0.09150 0.48384 0.83646 1.45164 1.54440 1.69097 1.77661 2.25121 2.45882 2.74109 3.01799 3.06711 3.43630 3.72875 3.77482 3.82065 3.96607 3.97310 4.15212 4.30155 4.33621 4.39709 4.55970 4.59293 4.65312 4.71265 4.76309 4.80179 4.87545 4.91608 4.94594 5.05647 5.13054 5.16420 5.22144 5.31967 5.35270 5.41021 5.50252 5.52863 5.63362 5.71379 5.93297 6.07293 6.40863 6.59431 6.77562 7.21040 7.31136 7.46510 8.58985 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.003236 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.940998 B = 8651.616728 C = 9579.148341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.254 3.746 4 H 0.047 0.953 5 C -0.610 4.610 6 H 0.027 0.973 7 C -0.015 4.015 8 N -0.937 5.937 9 Si 1.082 2.918 10 H -0.256 1.256 11 H -0.238 1.238 12 H -0.294 1.294 13 N -0.684 5.684 14 C 0.450 3.550 15 C -0.327 4.327 16 C 0.434 3.566 17 N -0.625 5.625 18 C 0.642 3.358 19 O -0.523 6.523 20 O -0.362 6.362 21 C 0.125 3.875 22 C -0.181 4.181 23 C -0.135 4.135 24 C -0.180 4.180 25 N -0.578 5.578 26 C 0.357 3.643 27 N -0.618 5.618 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.254 0.746 34 H 0.400 0.600 35 H 0.159 0.841 36 H 0.437 0.563 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.048 4.642 -2.124 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C 0.149 3.851 4 H 0.065 0.935 5 C -0.648 4.648 6 H 0.046 0.954 7 C -0.214 4.214 8 N -0.573 5.573 9 Si 0.903 3.097 10 H -0.181 1.181 11 H -0.162 1.162 12 H -0.221 1.221 13 N -0.310 5.310 14 C 0.206 3.794 15 C -0.359 4.359 16 C 0.199 3.801 17 N -0.279 5.279 18 C 0.395 3.605 19 O -0.407 6.407 20 O -0.277 6.277 21 C 0.089 3.911 22 C -0.238 4.238 23 C -0.192 4.192 24 C -0.237 4.237 25 N -0.305 5.305 26 C 0.067 3.933 27 N -0.346 5.346 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.234 0.766 35 H 0.177 0.823 36 H 0.277 0.723 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.122 0.878 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -26.425 4.674 -2.619 26.962 hybrid contribution 1.655 0.137 1.222 2.062 sum -24.769 4.811 -1.397 25.271 Atomic orbital electron populations 1.22163 0.94895 1.02039 1.01618 1.22253 0.96090 0.98086 1.01500 1.19145 0.93721 0.89829 0.82373 0.93500 1.22336 0.91824 1.46973 1.03648 0.95423 1.27193 0.97709 0.93509 1.03000 1.70941 1.05529 1.44587 1.36202 0.83619 0.75049 0.78789 0.72270 1.18121 1.16155 1.22071 1.44966 1.11715 1.56916 1.17405 1.18489 0.86304 0.86033 0.88586 1.21614 0.94689 1.16002 1.03576 1.17883 0.85822 0.89440 0.86974 1.41885 1.14759 1.52239 1.19055 1.18186 0.80893 0.79475 0.81902 1.91014 1.78839 1.40282 1.30542 1.86326 1.26963 1.68357 1.46089 1.22499 0.79957 0.90528 0.98084 1.22482 1.04000 0.94430 1.02901 1.21895 0.97804 1.03946 0.95544 1.22476 1.02085 1.02123 0.97052 1.68340 1.36333 1.25027 1.00782 1.25045 0.82282 0.88949 0.97013 1.68028 1.22370 1.19376 1.24838 0.91795 0.93424 0.91312 0.92078 0.93068 0.93695 0.76555 0.82334 0.72303 0.91929 0.88815 0.92200 0.91041 0.87777 0.91090 0.92090 0.88858 0.91925 0.76140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.40 8.23 71.98 0.59 -3.81 16 2 C -0.14 -5.22 5.20 30.59 0.16 -5.06 16 3 C 0.25 10.63 1.78 44.24 0.08 10.71 16 4 H 0.05 1.94 5.03 -2.39 -0.01 1.93 16 5 C -0.61 -31.91 9.10 25.60 0.23 -31.67 16 6 H 0.03 1.61 7.95 -2.91 -0.02 1.58 16 7 C -0.02 -0.83 5.43 84.66 0.46 -0.37 16 8 N -0.94 -55.97 13.70 21.45 0.29 -55.67 16 9 Si 1.08 45.02 25.32 68.60 1.74 46.76 16 10 H -0.26 -9.71 6.75 99.48 0.67 -9.03 16 11 H -0.24 -8.33 6.37 99.48 0.63 -7.70 16 12 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 13 N -0.68 -26.81 5.17 -327.80 -1.69 -28.50 16 14 C 0.45 16.17 6.55 133.01 0.87 17.04 16 15 C -0.33 -10.36 6.65 22.70 0.15 -10.21 16 16 C 0.43 13.28 7.43 132.78 0.99 14.26 16 17 N -0.63 -15.64 5.39 -434.24 -2.34 -17.98 16 18 C 0.64 17.14 8.01 129.79 1.04 18.18 16 19 O -0.52 -16.52 10.22 19.85 0.20 -16.32 16 20 O -0.36 -7.90 9.94 -55.45 -0.55 -8.45 16 21 C 0.13 2.15 1.13 -10.79 -0.01 2.14 16 22 C -0.18 -3.16 8.37 71.98 0.60 -2.56 16 23 C -0.13 -1.40 8.85 71.98 0.64 -0.76 16 24 C -0.18 -3.12 8.37 71.98 0.60 -2.51 16 25 N -0.58 -18.93 8.08 -197.62 -1.60 -20.53 16 26 C 0.36 10.95 12.28 180.91 2.22 13.17 16 27 N -0.62 -21.38 10.47 -197.81 -2.07 -23.45 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 1.48 5.37 -2.39 -0.01 1.46 16 30 H 0.07 1.75 6.38 -2.39 -0.02 1.73 16 31 H 0.06 2.31 4.33 -2.39 -0.01 2.30 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.25 15.47 8.72 -92.71 -0.81 14.66 16 34 H 0.40 16.09 8.65 -92.71 -0.80 15.29 16 35 H 0.16 4.66 4.12 -2.91 -0.01 4.65 16 36 H 0.44 8.03 8.83 -92.70 -0.82 7.21 16 37 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.44 5.88 -2.39 -0.01 1.42 16 40 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.22 5.07 8.06 -2.92 -0.02 5.05 16 Total: -1.00 -67.53 358.35 1.88 -65.65 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.73 Total: 39.95 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 8.62 Total: 18.55 kcal Atomic # 7 Polarization: -138.73 SS G_CDS: -7.41 Total: -146.14 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.35 Total: -24.77 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.74 Total: 46.76 kcal Total: -67.53 1.88 -65.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.930 kcal (2) G-P(sol) polarization free energy of solvation -67.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds