Wall clock time and date at job start Tue Mar 31 2020 12:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08994 * 109.47465 * 305.00017 * 3 2 1 5 5 C 1.50707 * 109.47009 * 184.99986 * 3 2 1 6 6 H 1.07999 * 120.00020 * 240.00317 * 5 3 2 7 7 C 1.37879 * 119.99772 * 59.99744 * 5 3 2 8 8 N 1.31508 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99526 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47796 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46833 * 120.00486 * 9 7 5 12 12 H 1.48501 * 109.47094 * 239.99875 * 9 7 5 13 13 N 1.46500 * 109.47177 * 65.00225 * 3 2 1 14 14 C 1.38532 * 120.00068 * 274.99816 * 13 3 2 15 15 C 1.39687 * 120.49017 * 359.71825 * 14 13 3 16 16 C 1.38088 * 118.46904 * 179.71425 * 15 14 13 17 17 N 1.32518 * 119.28064 * 0.56262 * 16 15 14 18 18 C 1.32385 * 120.94341 * 359.72502 * 17 16 15 19 19 N 1.38900 * 119.16384 * 180.02562 * 18 17 16 20 20 C 1.34774 * 120.00445 * 359.97174 * 19 18 17 21 21 O 1.21498 * 119.99771 * 0.02562 * 20 19 18 22 22 O 1.34624 * 120.00575 * 180.02562 * 20 19 18 23 23 C 1.45198 * 117.00435 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.46809 * 60.00324 * 23 22 20 25 25 C 1.53000 * 109.47174 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47218 * 300.00402 * 23 22 20 27 27 N 1.32389 * 121.66564 * 359.97438 * 18 17 16 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 31 31 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 33 33 H 0.97004 * 119.99780 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00081 * 94.99731 * 13 3 2 35 35 H 1.07999 * 120.76202 * 359.97438 * 15 14 13 36 36 H 1.08004 * 120.36067 * 180.29149 * 16 15 14 37 37 H 0.97008 * 119.99574 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47931 * 59.99940 * 24 23 22 39 39 H 1.09004 * 109.47136 * 180.02562 * 24 23 22 40 40 H 1.09009 * 109.47323 * 299.99939 * 24 23 22 41 41 H 1.09004 * 109.46937 * 60.00048 * 25 23 22 42 42 H 1.08994 * 109.46830 * 179.97438 * 25 23 22 43 43 H 1.09003 * 109.47281 * 300.00296 * 25 23 22 44 44 H 1.08997 * 109.47263 * 59.99278 * 26 23 22 45 45 H 1.08995 * 109.47055 * 180.02562 * 26 23 22 46 46 H 1.09004 * 109.46788 * 299.99888 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8803 -1.3811 10 1 6.5988 1.5445 -0.1930 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6159 -2.6091 13 7 1.6524 2.0975 1.2518 14 6 0.4011 2.6801 1.3702 15 6 -0.4969 2.6542 0.3006 16 6 -1.7351 3.2425 0.4662 17 7 -2.0289 3.8198 1.6223 18 6 -1.1557 3.8345 2.6172 19 7 -1.5026 4.4495 3.8133 20 6 -2.7150 5.0221 3.9499 21 8 -3.5048 4.9998 3.0269 22 8 -3.0511 5.6187 5.1090 23 6 -4.3733 6.2139 5.1850 24 6 -5.4326 5.1340 4.9563 25 6 -4.5727 6.8386 6.5674 26 6 -4.5080 7.2958 4.1116 27 7 0.0394 3.2768 2.5013 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.8293 -0.0603 -2.9502 34 1 2.2719 2.1232 1.9978 35 1 -0.2304 2.1813 -0.6331 36 1 -2.4547 3.2360 -0.3391 37 1 -0.8722 4.4670 4.5504 38 1 -5.3367 4.3631 5.7209 39 1 -6.4252 5.5809 5.0129 40 1 -5.2907 4.6885 3.9716 41 1 -3.8180 7.6079 6.7307 42 1 -5.5651 7.2858 6.6242 43 1 -4.4769 6.0675 7.3318 44 1 -4.3660 6.8505 3.1269 45 1 -5.5004 7.7430 4.1689 46 1 -3.7532 8.0652 4.2745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161049474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:40 Heat of formation + Delta-G solvation = -9.976776 kcal Electronic energy + Delta-G solvation = -27516.768793 eV Core-core repulsion = 23635.827236 eV Total energy + Delta-G solvation = -3880.941557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.14894 -40.26713 -37.72726 -36.53016 -34.83899 -33.98837 -33.52088 -32.17930 -30.66377 -29.77124 -27.62173 -27.54683 -26.83363 -24.49239 -23.54418 -22.97856 -21.83268 -20.16306 -19.83704 -18.58006 -17.92250 -17.17238 -16.46045 -16.35609 -16.07222 -15.42537 -14.97224 -14.88898 -14.69491 -14.45521 -14.35462 -13.82360 -13.67096 -13.18474 -13.02632 -12.78320 -12.71311 -12.41800 -12.07935 -12.06801 -11.95907 -11.71948 -11.49638 -11.44336 -11.15148 -11.04969 -10.80038 -10.70594 -10.59310 -10.41487 -10.31414 -10.10261 -9.92573 -9.67993 -9.17927 -8.74840 -8.53264 -8.48819 -7.20389 -6.28614 -4.37204 1.52669 1.80714 2.01328 2.92586 3.16296 3.25132 3.28065 3.65999 3.99329 4.27497 4.49144 4.50952 4.56390 4.69457 4.83547 5.04253 5.17086 5.24759 5.33166 5.43123 5.47911 5.50883 5.57083 5.67545 5.76885 5.82604 6.07176 6.10109 6.13424 6.14429 6.21321 6.32731 6.35554 6.44254 6.72845 6.79141 6.86842 7.05697 7.08131 7.30070 7.47218 7.54624 7.66069 7.93617 8.12806 8.35177 8.46713 8.68223 8.87248 9.30487 10.77115 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.002447 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.360066 B =11440.583650 C =11841.939870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C 0.273 3.727 4 H 0.047 0.953 5 C -0.533 4.533 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.679 5.679 14 C 0.472 3.528 15 C -0.310 4.310 16 C 0.181 3.819 17 N -0.556 5.556 18 C 0.577 3.423 19 N -0.619 5.619 20 C 0.649 3.351 21 O -0.498 6.498 22 O -0.365 6.365 23 C 0.137 3.863 24 C -0.185 4.185 25 C -0.140 4.140 26 C -0.185 4.185 27 N -0.619 5.619 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.266 0.734 34 H 0.398 0.602 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.423 0.577 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 8.636 11.937 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.171 3.829 4 H 0.065 0.935 5 C -0.572 4.572 6 H 0.083 0.917 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.305 5.305 14 C 0.223 3.777 15 C -0.339 4.339 16 C 0.021 3.979 17 N -0.283 5.283 18 C 0.219 3.781 19 N -0.274 5.274 20 C 0.400 3.600 21 O -0.379 6.379 22 O -0.281 6.281 23 C 0.101 3.899 24 C -0.242 4.242 25 C -0.197 4.197 26 C -0.242 4.242 27 N -0.353 5.353 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.233 0.767 35 H 0.171 0.829 36 H 0.178 0.822 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.341 8.926 11.974 20.706 hybrid contribution 1.821 -0.482 -0.197 1.894 sum -12.520 8.444 11.778 19.151 Atomic orbital electron populations 1.22184 0.98855 0.99491 1.00300 1.22051 0.92264 0.99860 1.03097 1.18980 0.95136 0.88948 0.79821 0.93527 1.21196 0.90251 1.39203 1.06528 0.91749 1.24858 0.98920 0.94512 0.95227 1.69858 1.35278 1.37554 1.09376 0.86348 0.84436 0.77880 0.78233 1.19665 1.20776 1.20776 1.45529 1.10791 1.55541 1.18633 1.18280 0.87095 0.85278 0.87009 1.22477 0.97034 1.12028 1.02407 1.22638 0.93850 0.88218 0.93179 1.68322 1.33726 1.25224 1.00980 1.18270 0.85513 0.88967 0.85327 1.41287 1.15579 1.56009 1.14562 1.17800 0.82301 0.78058 0.81838 1.91027 1.48431 1.58942 1.39491 1.86280 1.37455 1.68444 1.35879 1.22092 0.78152 0.92771 0.96902 1.22529 0.98073 0.98706 1.04888 1.21860 1.02656 1.01163 0.94039 1.22528 1.02460 0.98149 1.01060 1.67004 1.18784 1.21966 1.27589 0.94819 0.94010 0.93050 0.94344 0.87725 0.92407 0.76704 0.82858 0.82168 0.73925 0.92172 0.91124 0.89097 0.91451 0.90111 0.91448 0.89083 0.91125 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.23 37.16 0.31 -2.53 16 2 C -0.13 -2.89 5.45 -26.73 -0.15 -3.04 16 3 C 0.27 6.14 2.20 -69.08 -0.15 5.99 16 4 H 0.05 1.14 6.49 -51.93 -0.34 0.80 16 5 C -0.53 -13.22 8.73 -34.44 -0.30 -13.52 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -22.83 11.29 55.43 0.63 -22.20 16 9 Si 0.90 19.77 29.54 -169.99 -5.02 14.74 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.68 -13.67 5.16 -54.92 -0.28 -13.96 16 14 C 0.47 9.13 6.52 -154.84 -1.01 8.12 16 15 C -0.31 -5.60 6.79 -39.10 -0.27 -5.86 16 16 C 0.18 3.05 11.28 -17.31 -0.20 2.85 16 17 N -0.56 -10.26 7.86 -13.93 -0.11 -10.37 16 18 C 0.58 10.37 8.38 -322.36 -2.70 7.67 16 19 N -0.62 -9.24 5.40 -17.55 -0.09 -9.34 16 20 C 0.65 9.63 8.02 54.05 0.43 10.07 16 21 O -0.50 -8.40 10.07 -19.27 -0.19 -8.60 16 22 O -0.36 -4.51 9.94 -40.28 -0.40 -4.91 16 23 C 0.14 1.37 1.13 -90.62 -0.10 1.27 16 24 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 25 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 26 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 27 N -0.62 -11.56 10.49 -13.07 -0.14 -11.70 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.79 5.40 -51.93 -0.28 0.51 16 30 H 0.05 0.92 6.35 -51.93 -0.33 0.59 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.52 5.95 -51.93 -0.31 2.21 16 33 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 34 H 0.40 7.75 8.66 -40.82 -0.35 7.39 16 35 H 0.15 2.79 4.15 -52.49 -0.22 2.57 16 36 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16 37 H 0.42 5.19 8.92 -40.82 -0.36 4.83 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.15 5.88 -51.92 -0.31 0.85 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -28.05 363.76 -9.98 -38.03 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -6.57 Total: 13.85 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -3.28 Total: 8.96 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: 0.00 Total: -67.56 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.59 Total: -13.50 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.05 -9.98 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.056 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds