Wall clock time and date at job start Tue Mar 31 2020 12:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08994 * 109.47465 * 305.00017 * 3 2 1 5 5 C 1.50707 * 109.47009 * 184.99986 * 3 2 1 6 6 H 1.07999 * 120.00020 * 240.00317 * 5 3 2 7 7 C 1.37879 * 119.99772 * 59.99744 * 5 3 2 8 8 N 1.31508 * 119.99957 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99526 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47796 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46833 * 120.00486 * 9 7 5 12 12 H 1.48501 * 109.47094 * 239.99875 * 9 7 5 13 13 N 1.46500 * 109.47177 * 65.00225 * 3 2 1 14 14 C 1.38532 * 120.00068 * 274.99816 * 13 3 2 15 15 C 1.39687 * 120.49017 * 359.71825 * 14 13 3 16 16 C 1.38088 * 118.46904 * 179.71425 * 15 14 13 17 17 N 1.32518 * 119.28064 * 0.56262 * 16 15 14 18 18 C 1.32385 * 120.94341 * 359.72502 * 17 16 15 19 19 N 1.38900 * 119.16384 * 180.02562 * 18 17 16 20 20 C 1.34774 * 120.00445 * 359.97174 * 19 18 17 21 21 O 1.21498 * 119.99771 * 0.02562 * 20 19 18 22 22 O 1.34624 * 120.00575 * 180.02562 * 20 19 18 23 23 C 1.45198 * 117.00435 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.46809 * 60.00324 * 23 22 20 25 25 C 1.53000 * 109.47174 * 179.97438 * 23 22 20 26 26 C 1.52999 * 109.47218 * 300.00402 * 23 22 20 27 27 N 1.32389 * 121.66564 * 359.97438 * 18 17 16 28 28 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 30 30 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 31 31 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 32 32 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 33 33 H 0.97004 * 119.99780 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00081 * 94.99731 * 13 3 2 35 35 H 1.07999 * 120.76202 * 359.97438 * 15 14 13 36 36 H 1.08004 * 120.36067 * 180.29149 * 16 15 14 37 37 H 0.97008 * 119.99574 * 179.97438 * 19 18 17 38 38 H 1.08995 * 109.47931 * 59.99940 * 24 23 22 39 39 H 1.09004 * 109.47136 * 180.02562 * 24 23 22 40 40 H 1.09009 * 109.47323 * 299.99939 * 24 23 22 41 41 H 1.09004 * 109.46937 * 60.00048 * 25 23 22 42 42 H 1.08994 * 109.46830 * 179.97438 * 25 23 22 43 43 H 1.09003 * 109.47281 * 300.00296 * 25 23 22 44 44 H 1.08997 * 109.47263 * 59.99278 * 26 23 22 45 45 H 1.08995 * 109.47055 * 180.02562 * 26 23 22 46 46 H 1.09004 * 109.46788 * 299.99888 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1732 9 14 6.0049 0.8803 -1.3811 10 1 6.5988 1.5445 -0.1930 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6159 -2.6091 13 7 1.6524 2.0975 1.2518 14 6 0.4011 2.6801 1.3702 15 6 -0.4969 2.6542 0.3006 16 6 -1.7351 3.2425 0.4662 17 7 -2.0289 3.8198 1.6223 18 6 -1.1557 3.8345 2.6172 19 7 -1.5026 4.4495 3.8133 20 6 -2.7150 5.0221 3.9499 21 8 -3.5048 4.9998 3.0269 22 8 -3.0511 5.6187 5.1090 23 6 -4.3733 6.2139 5.1850 24 6 -5.4326 5.1340 4.9563 25 6 -4.5727 6.8386 6.5674 26 6 -4.5080 7.2958 4.1116 27 7 0.0394 3.2768 2.5013 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.8293 -0.0603 -2.9502 34 1 2.2719 2.1232 1.9978 35 1 -0.2304 2.1813 -0.6331 36 1 -2.4547 3.2360 -0.3391 37 1 -0.8722 4.4670 4.5504 38 1 -5.3367 4.3631 5.7209 39 1 -6.4252 5.5809 5.0129 40 1 -5.2907 4.6885 3.9716 41 1 -3.8180 7.6079 6.7307 42 1 -5.5651 7.2858 6.6242 43 1 -4.4769 6.0675 7.3318 44 1 -4.3660 6.8505 3.1269 45 1 -5.5004 7.7430 4.1689 46 1 -3.7532 8.0652 4.2745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161049474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:39 Heat of formation + Delta-G solvation = -24.936414 kcal Electronic energy + Delta-G solvation = -27517.417491 eV Core-core repulsion = 23635.827236 eV Total energy + Delta-G solvation = -3881.590256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38366 -41.52026 -38.99058 -37.93477 -36.09199 -35.18593 -34.86830 -33.86094 -32.23448 -31.24063 -28.59365 -28.32345 -28.25041 -25.79830 -25.16017 -24.49408 -23.10998 -21.49247 -21.20929 -19.76497 -19.34127 -18.68461 -17.79051 -17.47976 -17.34208 -16.89878 -16.64837 -16.21409 -16.05365 -15.59039 -15.49637 -15.23685 -14.69689 -14.57342 -14.46240 -14.34774 -13.64373 -13.30494 -13.20909 -13.19382 -12.88763 -12.86253 -12.82951 -12.78353 -12.62523 -12.45551 -12.33043 -12.11904 -11.99689 -11.92001 -11.66115 -11.44063 -11.36336 -11.07191 -10.92212 -10.53369 -10.00264 -9.94974 -8.74636 -8.19468 -6.33580 0.13960 0.56016 0.68207 1.42607 1.46322 1.55743 1.73642 2.25113 2.47853 2.76890 3.06915 3.12079 3.53899 3.77109 3.82671 3.86034 3.97257 4.09823 4.34854 4.53061 4.53658 4.64291 4.66539 4.67396 4.73973 4.81046 4.81335 4.88475 4.92411 4.99637 5.01428 5.18388 5.25897 5.33397 5.33858 5.35979 5.38387 5.48225 5.58945 5.68691 5.76883 5.84913 6.08949 6.17682 6.51602 6.70993 6.93638 7.19861 7.36302 7.46685 8.85483 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031265 B = 0.002447 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.360066 B =11440.583650 C =11841.939870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.284 3.716 4 H 0.027 0.973 5 C -0.550 4.550 6 H 0.061 0.939 7 C 0.026 3.974 8 N -0.905 5.905 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.281 1.281 13 N -0.683 5.683 14 C 0.460 3.540 15 C -0.316 4.316 16 C 0.189 3.811 17 N -0.570 5.570 18 C 0.571 3.429 19 N -0.613 5.613 20 C 0.649 3.351 21 O -0.518 6.518 22 O -0.361 6.361 23 C 0.125 3.875 24 C -0.181 4.181 25 C -0.134 4.134 26 C -0.181 4.181 27 N -0.623 5.623 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.267 0.733 34 H 0.400 0.600 35 H 0.151 0.849 36 H 0.194 0.806 37 H 0.434 0.566 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.761 9.526 13.152 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.588 4.588 6 H 0.079 0.921 7 C -0.175 4.175 8 N -0.543 5.543 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.205 1.205 12 H -0.207 1.207 13 N -0.310 5.310 14 C 0.213 3.787 15 C -0.345 4.345 16 C 0.029 3.971 17 N -0.296 5.296 18 C 0.213 3.787 19 N -0.270 5.270 20 C 0.401 3.599 21 O -0.401 6.401 22 O -0.276 6.276 23 C 0.089 3.911 24 C -0.238 4.238 25 C -0.191 4.191 26 C -0.238 4.238 27 N -0.357 5.357 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.234 0.766 35 H 0.169 0.831 36 H 0.211 0.789 37 H 0.274 0.726 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.113 0.887 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.451 9.841 13.243 22.604 hybrid contribution 2.042 -0.676 -0.518 2.213 sum -13.409 9.165 12.725 20.633 Atomic orbital electron populations 1.22041 0.96517 1.00487 1.00500 1.21882 0.94290 0.98903 1.01460 1.18662 0.93924 0.89245 0.80106 0.95563 1.21493 0.91634 1.39122 1.06547 0.92113 1.25539 1.02556 0.94324 0.95064 1.69957 1.36615 1.38049 1.09708 0.85454 0.80056 0.77776 0.77998 1.19452 1.20493 1.20712 1.45250 1.11445 1.56381 1.17933 1.18422 0.86954 0.85595 0.87769 1.22490 0.97407 1.12659 1.01971 1.23170 0.93881 0.86622 0.93435 1.68440 1.34011 1.25593 1.01563 1.18555 0.85231 0.88782 0.86135 1.41283 1.16095 1.55551 1.14045 1.17890 0.81889 0.77834 0.82259 1.91026 1.48984 1.59632 1.40453 1.86316 1.39001 1.67994 1.34320 1.22541 0.76961 0.92786 0.98823 1.22482 0.99417 0.98836 1.03050 1.21895 1.04224 1.01208 0.91797 1.22482 1.04028 0.98013 0.99280 1.67002 1.19180 1.22131 1.27421 0.93395 0.94132 0.92433 0.95037 0.90106 0.92347 0.76558 0.83109 0.78888 0.72636 0.91903 0.88677 0.92179 0.91086 0.87609 0.91044 0.92177 0.88669 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.23 71.98 0.59 -4.52 16 2 C -0.13 -5.52 5.45 30.60 0.17 -5.35 16 3 C 0.28 12.96 2.20 44.25 0.10 13.06 16 4 H 0.03 1.32 6.49 -2.39 -0.02 1.30 16 5 C -0.55 -27.57 8.73 25.60 0.22 -27.35 16 6 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 7 C 0.03 1.33 5.29 84.66 0.45 1.78 16 8 N -0.91 -47.27 11.29 21.45 0.24 -47.03 16 9 Si 0.96 40.61 29.54 68.60 2.03 42.63 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 13 N -0.68 -27.80 5.16 -327.65 -1.69 -29.49 16 14 C 0.46 17.76 6.52 133.21 0.87 18.63 16 15 C -0.32 -11.27 6.79 22.58 0.15 -11.11 16 16 C 0.19 6.15 11.28 84.55 0.95 7.10 16 17 N -0.57 -20.59 7.86 -197.98 -1.56 -22.14 16 18 C 0.57 20.22 8.38 261.33 2.19 22.41 16 19 N -0.61 -17.96 5.40 -439.85 -2.38 -20.34 16 20 C 0.65 18.92 8.02 129.79 1.04 19.96 16 21 O -0.52 -17.41 10.07 19.85 0.20 -17.21 16 22 O -0.36 -8.50 9.94 -55.33 -0.55 -9.05 16 23 C 0.12 2.26 1.13 -10.80 -0.01 2.25 16 24 C -0.18 -3.29 8.37 71.98 0.60 -2.69 16 25 C -0.13 -1.48 8.85 71.98 0.64 -0.84 16 26 C -0.18 -3.31 8.37 71.98 0.60 -2.71 16 27 N -0.62 -23.08 10.49 -195.27 -2.05 -25.13 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.50 5.40 -2.39 -0.01 1.49 16 30 H 0.06 2.04 6.35 -2.39 -0.02 2.02 16 31 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 3.96 5.95 -2.39 -0.01 3.95 16 33 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 34 H 0.40 15.76 8.66 -92.71 -0.80 14.95 16 35 H 0.15 5.46 4.15 -2.91 -0.01 5.45 16 36 H 0.19 4.83 8.06 -2.91 -0.02 4.80 16 37 H 0.43 10.35 8.92 -92.70 -0.83 9.53 16 38 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.50 5.88 -2.38 -0.01 1.49 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -60.24 363.76 2.21 -58.03 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.60 Total: 39.10 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 8.56 Total: 30.63 kcal Atomic # 7 Polarization: -136.70 SS G_CDS: -7.43 Total: -144.13 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.35 Total: -26.27 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Total: -60.24 2.21 -58.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161049474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.093 kcal (2) G-P(sol) polarization free energy of solvation -60.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds