Wall clock time and date at job start Tue Mar 31 2020 12:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.53008 * 109.47192 * 240.00136 * 2 1 3 5 5 O 1.45203 * 109.47117 * 120.00098 * 2 1 3 6 6 C 1.34630 * 117.00147 * 60.00415 * 5 2 1 7 7 O 1.21503 * 120.00081 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00027 * 180.02562 * 6 5 2 9 9 C 1.39151 * 119.99979 * 180.27547 * 8 6 5 10 10 N 1.32356 * 119.11952 * 359.45143 * 9 8 6 11 11 C 1.32272 * 120.82801 * 179.72191 * 10 9 8 12 12 C 1.39200 * 119.09213 * 0.53987 * 11 10 9 13 13 N 1.40006 * 120.80562 * 179.71006 * 12 11 10 14 14 C 1.46506 * 119.99751 * 0.02795 * 13 12 11 15 15 C 1.52993 * 109.47168 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47232 * 179.97438 * 15 14 13 17 17 C 1.50690 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00215 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00238 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99322 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00525 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46771 * 60.00255 * 21 19 17 23 23 H 1.48496 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46809 * 300.00338 * 21 19 17 25 25 C 1.39205 * 118.39442 * 359.73735 * 12 11 10 26 26 N 1.32271 * 119.09437 * 359.97438 * 25 12 11 27 27 H 1.08996 * 109.47509 * 299.99497 * 1 2 3 28 28 H 1.08997 * 109.47439 * 60.00454 * 1 2 3 29 29 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47608 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47274 * 300.00103 * 3 2 1 32 32 H 1.09001 * 109.47144 * 59.99960 * 3 2 1 33 33 H 1.08997 * 109.46787 * 299.99814 * 4 2 1 34 34 H 1.09000 * 109.47038 * 60.00058 * 4 2 1 35 35 H 1.09001 * 109.46556 * 179.97438 * 4 2 1 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 37 37 H 1.07995 * 120.45469 * 180.25220 * 11 10 9 38 38 H 0.96998 * 120.00755 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.46503 * 300.00056 * 14 13 12 40 40 H 1.08996 * 109.47277 * 59.99466 * 14 13 12 41 41 H 1.09001 * 109.47124 * 299.99388 * 15 14 13 42 42 H 1.09004 * 109.47200 * 59.99924 * 15 14 13 43 43 H 1.09001 * 109.46712 * 299.99818 * 16 15 14 44 44 H 1.08996 * 109.47099 * 59.99670 * 16 15 14 45 45 H 0.97005 * 119.99556 * 179.97438 * 20 19 17 46 46 H 1.08001 * 120.44833 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6983 -3.9981 2.5721 10 7 0.9302 -4.5646 1.6550 11 6 0.5637 -5.8306 1.7657 12 6 0.9876 -6.5639 2.8704 13 7 0.6158 -7.9046 3.0267 14 6 -0.2288 -8.5526 2.0202 15 6 -0.4845 -10.0050 2.4274 16 6 -1.3672 -10.6815 1.3766 17 6 -1.6184 -12.1123 1.7774 18 1 -1.1916 -12.5002 2.6906 19 6 -2.3941 -12.9259 0.9790 20 7 -2.9142 -12.4533 -0.1327 21 14 -2.7062 -14.6993 1.4762 22 1 -3.3913 -14.7307 2.7933 23 1 -3.5627 -15.3558 0.4562 24 1 -1.4120 -15.4209 1.5740 25 6 1.7896 -5.9316 3.8164 26 7 2.1204 -4.6639 3.6351 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2494 36 1 2.6269 -2.2365 3.0833 37 1 -0.0598 -6.2879 1.0117 38 1 0.9175 -8.4045 3.8012 39 1 -1.1786 -8.0226 1.9473 40 1 0.2749 -8.5298 1.0539 41 1 0.4655 -10.5346 2.4999 42 1 -0.9881 -10.0281 3.3939 43 1 -2.3171 -10.1518 1.3046 44 1 -0.8640 -10.6584 0.4100 45 1 -3.4596 -13.0258 -0.6946 46 1 2.1369 -6.4690 4.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168430921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:24 Heat of formation + Delta-G solvation = -23.686365 kcal Electronic energy + Delta-G solvation = -26215.072366 eV Core-core repulsion = 22333.536317 eV Total energy + Delta-G solvation = -3881.536049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.46916 -40.62386 -37.83976 -36.62986 -35.00239 -34.19971 -33.65426 -33.52664 -31.67052 -29.01580 -27.71274 -27.63387 -26.48337 -25.07506 -24.18031 -22.72175 -21.95277 -20.67052 -20.22785 -18.73401 -18.27238 -17.20471 -16.76171 -16.54439 -16.42062 -16.26585 -15.31566 -14.87999 -14.79659 -14.61151 -14.57055 -14.35494 -14.31683 -13.75185 -13.36423 -12.80629 -12.70863 -12.37818 -12.32208 -12.19195 -12.17611 -12.09277 -11.84228 -11.70452 -11.39493 -11.19985 -10.90393 -10.82228 -10.80879 -10.64113 -10.58865 -10.16246 -10.02297 -9.68156 -9.54292 -9.20896 -9.02529 -8.42131 -7.37821 -6.07067 -4.10360 1.07048 1.14016 1.62219 2.68562 3.28885 3.33347 3.34190 3.37264 3.58980 3.91913 4.17884 4.40160 4.41226 4.46030 4.53839 4.59984 4.66967 4.88892 5.16492 5.24834 5.28908 5.29239 5.40023 5.47150 5.49427 5.58607 5.59726 5.62850 5.69132 5.79412 5.98475 6.04669 6.08773 6.17833 6.37551 6.47357 6.51991 6.82564 6.88639 6.95034 7.23247 7.55699 7.65351 7.67681 7.90800 8.08079 8.29645 8.32004 8.95831 9.54228 11.04076 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.001882 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.465181 B =14875.885621 C =15858.365723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.138 3.862 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.364 6.364 6 C 0.647 3.353 7 O -0.502 6.502 8 N -0.618 5.618 9 C 0.473 3.527 10 N -0.455 5.455 11 C 0.100 3.900 12 C 0.103 3.897 13 N -0.726 5.726 14 C 0.116 3.884 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.095 3.905 26 N -0.503 5.503 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.424 0.576 37 H 0.172 0.828 38 H 0.403 0.597 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.450 25.701 3.966 28.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.279 6.279 6 C 0.399 3.601 7 O -0.384 6.384 8 N -0.275 5.275 9 C 0.116 3.884 10 N -0.173 5.173 11 C -0.074 4.074 12 C -0.009 4.009 13 N -0.354 5.354 14 C -0.008 4.008 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.077 4.077 26 N -0.222 5.222 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.261 0.739 37 H 0.189 0.811 38 H 0.238 0.762 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 11.101 26.432 3.005 28.825 hybrid contribution -0.084 -1.886 0.925 2.103 sum 11.017 24.545 3.930 27.190 Atomic orbital electron populations 1.22531 0.93764 1.05403 1.02536 1.22125 0.94541 0.91388 0.81838 1.21862 1.02253 0.92409 1.03191 1.22533 1.01551 1.03768 0.96378 1.86274 1.71716 1.23047 1.46898 1.17813 0.79621 0.80775 0.81918 1.91047 1.37225 1.69131 1.40987 1.41146 1.53848 1.08026 1.24487 1.18423 0.95276 0.85575 0.89129 1.68194 1.11137 1.10913 1.27037 1.22826 0.99521 0.88479 0.96557 1.19686 0.96678 0.87823 0.96705 1.44920 1.55617 1.07346 1.27506 1.21755 0.93232 0.95006 0.90778 1.21851 1.01095 0.91386 1.01429 1.19028 0.94192 0.94946 0.93179 1.21151 1.31383 0.96188 1.07584 0.92699 1.25027 0.95739 0.98663 0.94987 1.69950 1.33898 1.36368 1.13004 0.86634 0.78232 0.84760 0.78233 1.20229 1.21239 1.20233 1.22375 0.97121 0.89179 0.99046 1.67385 1.24557 1.08982 1.21228 0.92160 0.90991 0.89113 0.91445 0.90010 0.91448 0.89115 0.90989 0.92164 0.73871 0.81140 0.76207 0.92069 0.92074 0.92605 0.92612 0.96265 0.96266 0.92821 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.37 37.16 0.31 -1.35 16 2 C 0.14 1.22 1.13 -90.62 -0.10 1.11 16 3 C -0.14 -0.83 8.85 37.16 0.33 -0.50 16 4 C -0.19 -1.66 8.37 37.16 0.31 -1.35 16 5 O -0.36 -3.87 9.94 -40.30 -0.40 -4.27 16 6 C 0.65 8.29 8.02 54.06 0.43 8.72 16 7 O -0.50 -7.68 10.08 -19.27 -0.19 -7.88 16 8 N -0.62 -7.36 5.41 -17.49 -0.09 -7.45 16 9 C 0.47 6.64 8.38 -322.08 -2.70 3.94 16 10 N -0.46 -7.06 7.86 -13.66 -0.11 -7.17 16 11 C 0.10 1.41 10.59 -17.00 -0.18 1.23 16 12 C 0.10 1.29 6.70 -83.41 -0.56 0.73 16 13 N -0.73 -8.83 5.75 -58.38 -0.34 -9.17 16 14 C 0.12 1.71 4.96 -4.04 -0.02 1.69 16 15 C -0.12 -2.16 5.27 -26.73 -0.14 -2.30 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.10 1.09 11.19 -17.00 -0.19 0.90 16 26 N -0.50 -6.44 10.45 -13.65 -0.14 -6.58 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.42 3.80 8.92 -40.82 -0.36 3.44 16 37 H 0.17 2.27 6.90 -52.49 -0.36 1.91 16 38 H 0.40 4.18 8.51 -40.82 -0.35 3.83 16 39 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 40 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 380.79 15.07 5.74 5.74 Total: -1.00 -32.23 380.79 -10.01 -42.24 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.13 Total: 3.69 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -3.06 Total: 0.21 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.06 Total: -55.83 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.59 Total: -12.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.23 -10.01 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.551 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds