Wall clock time and date at job start Tue Mar 31 2020 12:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.53008 * 109.47192 * 240.00136 * 2 1 3 5 5 O 1.45203 * 109.47117 * 120.00098 * 2 1 3 6 6 C 1.34630 * 117.00147 * 60.00415 * 5 2 1 7 7 O 1.21503 * 120.00081 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00027 * 180.02562 * 6 5 2 9 9 C 1.39151 * 119.99979 * 180.27547 * 8 6 5 10 10 N 1.32356 * 119.11952 * 359.45143 * 9 8 6 11 11 C 1.32272 * 120.82801 * 179.72191 * 10 9 8 12 12 C 1.39200 * 119.09213 * 0.53987 * 11 10 9 13 13 N 1.40006 * 120.80562 * 179.71006 * 12 11 10 14 14 C 1.46506 * 119.99751 * 0.02795 * 13 12 11 15 15 C 1.52993 * 109.47168 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47232 * 179.97438 * 15 14 13 17 17 C 1.50690 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00215 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00238 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99322 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00525 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46771 * 60.00255 * 21 19 17 23 23 H 1.48496 * 109.47095 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46809 * 300.00338 * 21 19 17 25 25 C 1.39205 * 118.39442 * 359.73735 * 12 11 10 26 26 N 1.32271 * 119.09437 * 359.97438 * 25 12 11 27 27 H 1.08996 * 109.47509 * 299.99497 * 1 2 3 28 28 H 1.08997 * 109.47439 * 60.00454 * 1 2 3 29 29 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47608 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47274 * 300.00103 * 3 2 1 32 32 H 1.09001 * 109.47144 * 59.99960 * 3 2 1 33 33 H 1.08997 * 109.46787 * 299.99814 * 4 2 1 34 34 H 1.09000 * 109.47038 * 60.00058 * 4 2 1 35 35 H 1.09001 * 109.46556 * 179.97438 * 4 2 1 36 36 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 37 37 H 1.07995 * 120.45469 * 180.25220 * 11 10 9 38 38 H 0.96998 * 120.00755 * 180.02562 * 13 12 11 39 39 H 1.09006 * 109.46503 * 300.00056 * 14 13 12 40 40 H 1.08996 * 109.47277 * 59.99466 * 14 13 12 41 41 H 1.09001 * 109.47124 * 299.99388 * 15 14 13 42 42 H 1.09004 * 109.47200 * 59.99924 * 15 14 13 43 43 H 1.09001 * 109.46712 * 299.99818 * 16 15 14 44 44 H 1.08996 * 109.47099 * 59.99670 * 16 15 14 45 45 H 0.97005 * 119.99556 * 179.97438 * 20 19 17 46 46 H 1.08001 * 120.44833 * 179.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5094 0.5040 8 7 2.0673 -2.6654 2.4171 9 6 1.6983 -3.9981 2.5721 10 7 0.9302 -4.5646 1.6550 11 6 0.5637 -5.8306 1.7657 12 6 0.9876 -6.5639 2.8704 13 7 0.6158 -7.9046 3.0267 14 6 -0.2288 -8.5526 2.0202 15 6 -0.4845 -10.0050 2.4274 16 6 -1.3672 -10.6815 1.3766 17 6 -1.6184 -12.1123 1.7774 18 1 -1.1916 -12.5002 2.6906 19 6 -2.3941 -12.9259 0.9790 20 7 -2.9142 -12.4533 -0.1327 21 14 -2.7062 -14.6993 1.4762 22 1 -3.3913 -14.7307 2.7933 23 1 -3.5627 -15.3558 0.4562 24 1 -1.4120 -15.4209 1.5740 25 6 1.7896 -5.9316 3.8164 26 7 2.1204 -4.6639 3.6351 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2494 36 1 2.6269 -2.2365 3.0833 37 1 -0.0598 -6.2879 1.0117 38 1 0.9175 -8.4045 3.8012 39 1 -1.1786 -8.0226 1.9473 40 1 0.2749 -8.5298 1.0539 41 1 0.4655 -10.5346 2.4999 42 1 -0.9881 -10.0281 3.3939 43 1 -2.3171 -10.1518 1.3046 44 1 -0.8640 -10.6584 0.4100 45 1 -3.4596 -13.0258 -0.6946 46 1 2.1369 -6.4690 4.6865 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168430921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:23 Heat of formation + Delta-G solvation = -43.270769 kcal Electronic energy + Delta-G solvation = -26215.921610 eV Core-core repulsion = 22333.536317 eV Total energy + Delta-G solvation = -3882.385293 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.45062 -41.55883 -38.76687 -37.75466 -36.14006 -35.46020 -34.78306 -34.67471 -33.33624 -30.32799 -28.35372 -28.27532 -28.01971 -26.16702 -25.47278 -24.04625 -22.97480 -22.18141 -21.17990 -19.66875 -19.23453 -18.54395 -18.15376 -17.70118 -17.48327 -17.22277 -16.49365 -16.44318 -15.91820 -15.84110 -15.52451 -15.45501 -15.22728 -14.50450 -14.46694 -14.13197 -13.99560 -13.76426 -13.32169 -13.24156 -12.92415 -12.85939 -12.83130 -12.82747 -12.64796 -12.51994 -12.35217 -12.21466 -12.19893 -11.88502 -11.59766 -11.44825 -11.38493 -11.20030 -11.08456 -10.79997 -10.53536 -10.05844 -8.39826 -8.19171 -6.29827 0.03866 0.13971 0.73475 1.41927 1.44081 1.51964 1.70675 2.29498 2.43669 2.69699 2.89237 3.14848 3.21550 3.56732 3.73544 3.77974 3.80325 3.88641 3.95214 4.19202 4.26276 4.51178 4.59460 4.63529 4.69130 4.73817 4.78451 4.81854 4.87137 4.90574 4.98858 5.02205 5.15847 5.19990 5.30336 5.32494 5.35959 5.50345 5.52766 5.74537 5.79871 5.86293 5.99464 6.15388 6.26107 6.73435 6.87924 7.08619 7.34722 7.39592 8.92256 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023534 B = 0.001882 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.465181 B =14875.885621 C =15858.365723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.134 4.134 4 C -0.181 4.181 5 O -0.360 6.360 6 C 0.645 3.355 7 O -0.531 6.531 8 N -0.611 5.611 9 C 0.461 3.539 10 N -0.486 5.486 11 C 0.080 3.920 12 C 0.104 3.896 13 N -0.715 5.715 14 C 0.130 3.870 15 C -0.103 4.103 16 C 0.023 3.977 17 C -0.543 4.543 18 H 0.064 0.936 19 C -0.002 4.002 20 N -0.933 5.933 21 Si 0.963 3.037 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.267 1.267 25 C 0.111 3.889 26 N -0.502 5.502 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.436 0.564 37 H 0.167 0.833 38 H 0.416 0.584 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.064 0.936 43 H -0.005 1.005 44 H -0.005 1.005 45 H 0.263 0.737 46 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.729 26.241 5.728 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.091 3.909 3 C -0.191 4.191 4 C -0.239 4.239 5 O -0.275 6.275 6 C 0.397 3.603 7 O -0.414 6.414 8 N -0.269 5.269 9 C 0.104 3.896 10 N -0.205 5.205 11 C -0.092 4.092 12 C -0.007 4.007 13 N -0.345 5.345 14 C 0.006 3.994 15 C -0.141 4.141 16 C -0.014 4.014 17 C -0.581 4.581 18 H 0.082 0.918 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.788 3.212 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.192 1.192 25 C -0.062 4.062 26 N -0.221 5.221 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.276 0.724 37 H 0.184 0.816 38 H 0.253 0.747 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.013 0.987 44 H 0.013 0.987 45 H 0.071 0.929 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.411 26.997 4.801 30.099 hybrid contribution -0.468 -1.994 0.366 2.081 sum 11.943 25.003 5.166 28.186 Atomic orbital electron populations 1.22482 0.94054 1.03557 1.03759 1.22494 0.94545 0.92808 0.81086 1.21886 1.02600 0.90057 1.04524 1.22484 1.01742 1.02101 0.97523 1.86303 1.71510 1.21832 1.47814 1.17989 0.79260 0.81318 0.81729 1.91045 1.38455 1.69888 1.42018 1.41125 1.53702 1.07498 1.24596 1.18684 0.95291 0.86300 0.89312 1.68151 1.12348 1.11715 1.28253 1.22859 1.00275 0.88608 0.97486 1.19635 0.96908 0.87624 0.96574 1.44576 1.55324 1.07241 1.27350 1.21372 0.93633 0.93215 0.91229 1.21549 1.00113 0.92807 0.99596 1.18944 0.94050 0.94427 0.94016 1.21674 1.31005 0.97627 1.07760 0.91821 1.25977 0.95645 1.03392 0.94973 1.70091 1.34869 1.38054 1.14294 0.85527 0.78409 0.79210 0.78062 1.19156 1.21217 1.19164 1.23038 0.95225 0.88629 0.99286 1.67532 1.24490 1.09470 1.20562 0.91734 0.88958 0.92390 0.90907 0.87866 0.90910 0.92391 0.88956 0.91736 0.72381 0.81567 0.74671 0.92502 0.92503 0.91770 0.91780 0.98672 0.98672 0.92859 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.37 71.98 0.60 -2.61 16 2 C 0.13 2.14 1.13 -10.79 -0.01 2.13 16 3 C -0.13 -1.29 8.85 71.98 0.64 -0.65 16 4 C -0.18 -3.22 8.37 71.98 0.60 -2.61 16 5 O -0.36 -7.55 9.94 -55.39 -0.55 -8.10 16 6 C 0.64 16.89 8.02 129.79 1.04 17.93 16 7 O -0.53 -17.08 10.08 19.83 0.20 -16.88 16 8 N -0.61 -14.49 5.41 -439.68 -2.38 -16.87 16 9 C 0.46 12.84 8.38 261.23 2.19 15.03 16 10 N -0.49 -15.46 7.86 -197.12 -1.55 -17.01 16 11 C 0.08 2.29 10.59 84.86 0.90 3.19 16 12 C 0.10 2.46 6.70 38.30 0.26 2.72 16 13 N -0.71 -16.07 5.75 -338.62 -1.95 -18.02 16 14 C 0.13 3.77 4.96 86.38 0.43 4.20 16 15 C -0.10 -3.62 5.27 30.59 0.16 -3.46 16 16 C 0.02 1.15 4.97 29.85 0.15 1.30 16 17 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 18 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 19 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 20 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 21 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 C 0.11 2.26 11.19 84.86 0.95 3.21 16 26 N -0.50 -12.02 10.45 -197.11 -2.06 -14.08 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.45 5.88 -2.39 -0.01 1.43 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.44 5.88 -2.39 -0.01 1.43 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.44 7.54 8.92 -92.71 -0.83 6.72 16 37 H 0.17 4.68 6.90 -2.91 -0.02 4.66 16 38 H 0.42 7.37 8.51 -92.71 -0.79 6.58 16 39 H 0.06 1.71 8.00 -2.38 -0.02 1.69 16 40 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 43 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 44 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 46 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -71.43 380.79 2.01 -69.42 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.61 Total: 20.46 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 8.60 Total: 11.43 kcal Atomic # 7 Polarization: -113.88 SS G_CDS: -7.65 Total: -121.53 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.35 Total: -24.98 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -71.43 2.01 -69.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168430921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.152 kcal (2) G-P(sol) polarization free energy of solvation -71.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds