Wall clock time and date at job start Tue Mar 31 2020 14:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.30198 * 2 1 4 4 C 1.54386 * 110.43319 * 237.76596 * 2 1 3 5 5 N 1.48146 * 104.61890 * 264.94845 * 4 2 1 6 6 C 1.34775 * 127.84246 * 140.39015 * 5 4 2 7 7 O 1.21635 * 120.00304 * 179.97438 * 6 5 4 8 8 C 1.47254 * 119.99638 * 359.97438 * 6 5 4 9 9 C 1.36249 * 126.16229 * 179.71390 * 8 6 5 10 10 N 1.36338 * 106.88626 * 179.89905 * 9 8 6 11 11 C 1.46505 * 126.20056 * 180.13621 * 10 9 8 12 12 C 1.36170 * 107.60194 * 0.36082 * 10 9 8 13 13 O 1.35465 * 125.55267 * 179.79434 * 12 10 9 14 14 N 1.30698 * 108.89764 * 359.76812 * 12 10 9 15 15 C 1.48152 * 104.32191 * 320.41410 * 5 4 2 16 16 C 1.54286 * 110.34500 * 122.17143 * 2 1 3 17 17 C 1.52994 * 110.34237 * 0.02562 * 16 2 1 18 18 C 1.53000 * 110.34248 * 237.84671 * 16 2 1 19 19 N 1.46499 * 109.46840 * 179.97438 * 18 16 2 20 20 C 1.36936 * 120.00002 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00140 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47261 * 59.99582 * 24 22 20 26 26 H 1.48502 * 109.47375 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46897 * 300.00142 * 24 22 20 28 28 H 1.09004 * 109.47334 * 297.82410 * 1 2 3 29 29 H 1.08998 * 109.47600 * 57.82764 * 1 2 3 30 30 H 1.09001 * 109.47098 * 177.82643 * 1 2 3 31 31 H 1.09000 * 110.40846 * 23.73133 * 4 2 1 32 32 H 1.09005 * 110.40942 * 146.04442 * 4 2 1 33 33 H 1.07995 * 126.55353 * 0.03153 * 9 8 6 34 34 H 1.08996 * 109.46487 * 270.29035 * 11 10 9 35 35 H 1.08997 * 109.47123 * 30.28693 * 11 10 9 36 36 H 1.08995 * 109.47282 * 150.29110 * 11 10 9 37 37 H 0.96691 * 113.99907 * 270.00138 * 13 12 10 38 38 H 1.09001 * 110.40521 * 280.80462 * 15 5 4 39 39 H 1.08994 * 110.41051 * 158.36695 * 15 5 4 40 40 H 1.08996 * 109.47469 * 298.52526 * 17 16 2 41 41 H 1.09004 * 109.47256 * 58.52617 * 17 16 2 42 42 H 1.09003 * 109.47302 * 178.52245 * 17 16 2 43 43 H 1.09002 * 109.47398 * 300.00305 * 18 16 2 44 44 H 1.09001 * 109.47194 * 60.00486 * 18 16 2 45 45 H 0.97000 * 120.00420 * 0.02562 * 19 18 16 46 46 H 0.96996 * 120.00586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0831 -3.3102 -1.3527 7 8 2.3442 -4.3628 -0.8020 8 6 1.5108 -3.3112 -2.7095 9 6 1.2290 -4.4112 -3.4624 10 7 0.7141 -3.9622 -4.6423 11 6 0.2648 -4.7931 -5.7622 12 6 0.6977 -2.6015 -4.5932 13 8 0.2594 -1.7830 -5.5795 14 7 1.1733 -2.2138 -3.4392 15 6 2.8825 -1.9399 0.6333 16 6 2.0664 -0.7703 1.2245 17 6 0.9063 -1.3019 2.0684 18 6 2.9671 0.1336 2.0686 19 7 3.4648 -0.6157 3.2249 20 6 4.2950 -0.0083 4.1287 21 1 4.5827 1.0234 3.9893 22 6 4.7670 -0.7184 5.2241 23 7 4.4161 -1.9754 5.3943 24 14 5.8990 0.1105 6.4574 25 1 5.2061 1.2783 7.0584 26 1 6.2583 -0.8555 7.5266 27 1 7.1322 0.5677 5.7679 28 1 -0.3634 0.4797 0.9089 29 1 -0.3634 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0390 31 1 1.3253 -0.7880 -2.0205 32 1 2.9957 -0.3212 -1.5792 33 1 1.3822 -5.4417 -3.1780 34 1 1.1002 -4.9736 -6.4385 35 1 -0.1074 -5.7445 -5.3823 36 1 -0.5326 -4.2791 -6.2988 37 1 0.9458 -1.5232 -6.2091 38 1 3.9374 -1.6731 0.5692 39 1 2.7526 -2.8376 1.2377 40 1 0.3104 -0.4659 2.4347 41 1 0.2813 -1.9534 1.4576 42 1 1.3005 -1.8652 2.9142 43 1 3.8091 0.4730 1.4654 44 1 2.3962 0.9958 2.4133 45 1 3.2062 -1.5421 3.3504 46 1 4.7456 -2.4716 6.1599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182493535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:43 Heat of formation + Delta-G solvation = 17.224390 kcal Electronic energy + Delta-G solvation = -28001.442560 eV Core-core repulsion = 24121.680535 eV Total energy + Delta-G solvation = -3879.762026 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47506 -39.96563 -38.10396 -37.50671 -34.80225 -34.40586 -32.88421 -31.34705 -29.61752 -29.35510 -28.01198 -26.99535 -25.51358 -25.25418 -23.42225 -22.50327 -21.74684 -20.90230 -19.62015 -18.66249 -18.23727 -17.51164 -16.91013 -16.50615 -15.96667 -15.65405 -15.30176 -14.78512 -14.58048 -14.48852 -14.09920 -13.89340 -13.81787 -13.36091 -13.18149 -13.01199 -12.89962 -12.79117 -12.37600 -12.29664 -12.05771 -11.81454 -11.37380 -11.12445 -11.08725 -10.90586 -10.72937 -10.49425 -10.18592 -10.15451 -10.10614 -10.07813 -9.78236 -9.73651 -9.48393 -8.85025 -8.78608 -8.31720 -6.82283 -5.67286 -2.95610 1.28575 1.83919 2.07810 3.07146 3.47191 3.50151 3.54207 3.55490 3.57060 4.20741 4.31144 4.55662 4.63775 4.73606 4.85541 4.90484 5.01379 5.16056 5.18370 5.50898 5.56576 5.63415 5.68165 5.72154 5.79207 5.83420 6.01089 6.09564 6.13566 6.16109 6.21592 6.25588 6.30866 6.36355 6.42770 6.49559 6.59593 6.75833 6.84338 6.91435 7.01863 7.15261 7.36865 7.77640 7.85289 8.38854 8.51573 9.62566 10.21298 10.56030 11.55476 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.002789 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.708687 B =10035.307444 C =10597.982153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.098 3.902 5 N -0.603 5.603 6 C 0.617 3.383 7 O -0.545 6.545 8 C -0.034 4.034 9 C 0.040 3.960 10 N -0.465 5.465 11 C 0.068 3.932 12 C 0.374 3.626 13 O -0.440 6.440 14 N -0.449 5.449 15 C 0.120 3.880 16 C -0.075 4.075 17 C -0.131 4.131 18 C 0.168 3.832 19 N -0.730 5.730 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.196 0.804 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.402 0.598 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.385 0.615 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 -2.702 -26.952 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.025 4.025 5 N -0.334 5.334 6 C 0.405 3.595 7 O -0.422 6.422 8 C -0.163 4.163 9 C -0.097 4.097 10 N -0.160 5.160 11 C -0.074 4.074 12 C 0.073 3.927 13 O -0.240 6.240 14 N -0.179 5.179 15 C -0.001 4.001 16 C -0.076 4.076 17 C -0.188 4.188 18 C 0.040 3.960 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.083 0.917 33 H 0.213 0.787 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.258 0.742 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.220 0.780 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.880 -2.470 -26.272 28.543 hybrid contribution 0.903 -0.501 0.030 1.033 sum -9.977 -2.970 -26.242 28.231 Atomic orbital electron populations 1.21860 0.94738 1.01689 1.01189 1.22149 0.96170 0.99393 0.94103 0.89728 1.22798 1.01562 0.80661 0.97434 1.48701 1.61417 1.05524 1.17737 1.16342 0.77860 0.82591 0.82732 1.90832 1.54306 1.30509 1.66599 1.20429 1.10048 0.88856 0.96921 1.22645 1.00777 1.00805 0.85436 1.45827 1.47716 1.07372 1.15071 1.22139 1.01510 0.95913 0.87834 1.20414 1.03053 0.78586 0.90605 1.84893 1.37638 1.62838 1.38676 1.70902 1.15889 1.28743 1.02377 1.22507 0.97214 0.98994 0.81419 1.21706 0.96152 0.95173 0.94614 1.21846 0.96884 1.00637 0.99409 1.20711 0.93671 0.92988 0.88583 1.42408 1.57394 1.12948 1.24789 1.19170 1.20444 0.95653 1.01671 0.91330 1.24725 1.01194 0.96090 0.98978 1.69647 1.49038 1.08443 1.31002 0.86285 0.80752 0.78129 0.81104 1.21384 1.21783 1.21368 0.92209 0.93240 0.92649 0.87098 0.91743 0.78730 0.90112 0.88965 0.88920 0.74156 0.90424 0.89678 0.92536 0.93426 0.91593 0.96214 0.96009 0.78023 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 7.93 37.16 0.29 -1.48 16 2 C -0.10 -1.39 3.30 -89.22 -0.29 -1.68 16 3 H 0.08 1.12 7.71 -51.93 -0.40 0.72 16 4 C 0.10 1.38 6.23 -2.41 -0.02 1.37 16 5 N -0.60 -9.90 3.32 -170.63 -0.57 -10.47 16 6 C 0.62 10.43 7.90 -12.60 -0.10 10.34 16 7 O -0.54 -10.75 17.14 5.25 0.09 -10.66 16 8 C -0.03 -0.46 6.84 -83.06 -0.57 -1.03 16 9 C 0.04 0.41 11.29 -16.26 -0.18 0.23 16 10 N -0.47 -3.67 3.16 -125.77 -0.40 -4.07 16 11 C 0.07 0.21 11.11 59.85 0.66 0.88 16 12 C 0.37 3.63 9.03 -89.17 -0.81 2.83 16 13 O -0.44 -3.05 13.55 -18.09 -0.25 -3.29 16 14 N -0.45 -5.67 8.35 -11.21 -0.09 -5.76 16 15 C 0.12 2.20 5.71 -2.40 -0.01 2.19 16 16 C -0.08 -1.29 0.73 -153.11 -0.11 -1.40 16 17 C -0.13 -2.27 7.07 37.15 0.26 -2.01 16 18 C 0.17 3.43 4.87 -4.04 -0.02 3.41 16 19 N -0.73 -18.65 5.13 -59.91 -0.31 -18.96 16 20 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 23 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 24 Si 0.91 22.86 29.55 -169.99 -5.02 17.84 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H 0.06 0.76 6.84 -51.93 -0.36 0.40 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.77 6.76 -51.93 -0.35 0.42 16 31 H 0.11 1.52 5.16 -51.93 -0.27 1.26 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.09 0.22 8.13 -51.93 -0.42 -0.21 16 37 H 0.40 0.73 9.06 45.56 0.41 1.14 16 38 H 0.08 1.49 7.83 -51.93 -0.41 1.09 16 39 H 0.08 1.74 7.60 -51.93 -0.39 1.35 16 40 H 0.06 0.93 6.89 -51.93 -0.36 0.57 16 41 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 42 H 0.07 1.32 6.78 -51.93 -0.35 0.97 16 43 H 0.02 0.41 8.10 -51.93 -0.42 -0.01 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.39 10.39 6.19 -40.82 -0.25 10.14 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -36.42 370.76 -7.37 -43.79 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.00 Total: 7.83 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.14 Total: 6.24 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -0.64 Total: -67.33 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.16 Total: -13.95 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.42 -7.37 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182493535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.012 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds