Wall clock time and date at job start Tue Mar 31 2020 14:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.30198 * 2 1 4 4 C 1.54386 * 110.43319 * 237.76596 * 2 1 3 5 5 N 1.48146 * 104.61890 * 264.94845 * 4 2 1 6 6 C 1.34775 * 127.84246 * 140.39015 * 5 4 2 7 7 O 1.21635 * 120.00304 * 179.97438 * 6 5 4 8 8 C 1.47254 * 119.99638 * 359.97438 * 6 5 4 9 9 C 1.36249 * 126.16229 * 179.71390 * 8 6 5 10 10 N 1.36338 * 106.88626 * 179.89905 * 9 8 6 11 11 C 1.46505 * 126.20056 * 180.13621 * 10 9 8 12 12 C 1.36170 * 107.60194 * 0.36082 * 10 9 8 13 13 O 1.35465 * 125.55267 * 179.79434 * 12 10 9 14 14 N 1.30698 * 108.89764 * 359.76812 * 12 10 9 15 15 C 1.48152 * 104.32191 * 320.41410 * 5 4 2 16 16 C 1.54286 * 110.34500 * 122.17143 * 2 1 3 17 17 C 1.52994 * 110.34237 * 0.02562 * 16 2 1 18 18 C 1.53000 * 110.34248 * 237.84671 * 16 2 1 19 19 N 1.46499 * 109.46840 * 179.97438 * 18 16 2 20 20 C 1.36936 * 120.00002 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00140 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47261 * 59.99582 * 24 22 20 26 26 H 1.48502 * 109.47375 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46897 * 300.00142 * 24 22 20 28 28 H 1.09004 * 109.47334 * 297.82410 * 1 2 3 29 29 H 1.08998 * 109.47600 * 57.82764 * 1 2 3 30 30 H 1.09001 * 109.47098 * 177.82643 * 1 2 3 31 31 H 1.09000 * 110.40846 * 23.73133 * 4 2 1 32 32 H 1.09005 * 110.40942 * 146.04442 * 4 2 1 33 33 H 1.07995 * 126.55353 * 0.03153 * 9 8 6 34 34 H 1.08996 * 109.46487 * 270.29035 * 11 10 9 35 35 H 1.08997 * 109.47123 * 30.28693 * 11 10 9 36 36 H 1.08995 * 109.47282 * 150.29110 * 11 10 9 37 37 H 0.96691 * 113.99907 * 270.00138 * 13 12 10 38 38 H 1.09001 * 110.40521 * 280.80462 * 15 5 4 39 39 H 1.08994 * 110.41051 * 158.36695 * 15 5 4 40 40 H 1.08996 * 109.47469 * 298.52526 * 17 16 2 41 41 H 1.09004 * 109.47256 * 58.52617 * 17 16 2 42 42 H 1.09003 * 109.47302 * 178.52245 * 17 16 2 43 43 H 1.09002 * 109.47398 * 300.00305 * 18 16 2 44 44 H 1.09001 * 109.47194 * 60.00486 * 18 16 2 45 45 H 0.97000 * 120.00420 * 0.02562 * 19 18 16 46 46 H 0.96996 * 120.00586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2237 5 7 2.3178 -2.1429 -0.7212 6 6 2.0831 -3.3102 -1.3527 7 8 2.3442 -4.3628 -0.8020 8 6 1.5108 -3.3112 -2.7095 9 6 1.2290 -4.4112 -3.4624 10 7 0.7141 -3.9622 -4.6423 11 6 0.2648 -4.7931 -5.7622 12 6 0.6977 -2.6015 -4.5932 13 8 0.2594 -1.7830 -5.5795 14 7 1.1733 -2.2138 -3.4392 15 6 2.8825 -1.9399 0.6333 16 6 2.0664 -0.7703 1.2245 17 6 0.9063 -1.3019 2.0684 18 6 2.9671 0.1336 2.0686 19 7 3.4648 -0.6157 3.2249 20 6 4.2950 -0.0083 4.1287 21 1 4.5827 1.0234 3.9893 22 6 4.7670 -0.7184 5.2241 23 7 4.4161 -1.9754 5.3943 24 14 5.8990 0.1105 6.4574 25 1 5.2061 1.2783 7.0584 26 1 6.2583 -0.8555 7.5266 27 1 7.1322 0.5677 5.7679 28 1 -0.3634 0.4797 0.9089 29 1 -0.3634 0.5472 -0.8698 30 1 -0.3633 -1.0269 -0.0390 31 1 1.3253 -0.7880 -2.0205 32 1 2.9957 -0.3212 -1.5792 33 1 1.3822 -5.4417 -3.1780 34 1 1.1002 -4.9736 -6.4385 35 1 -0.1074 -5.7445 -5.3823 36 1 -0.5326 -4.2791 -6.2988 37 1 0.9458 -1.5232 -6.2091 38 1 3.9374 -1.6731 0.5692 39 1 2.7526 -2.8376 1.2377 40 1 0.3104 -0.4659 2.4347 41 1 0.2813 -1.9534 1.4576 42 1 1.3005 -1.8652 2.9142 43 1 3.8091 0.4730 1.4654 44 1 2.3962 0.9958 2.4133 45 1 3.2062 -1.5421 3.3504 46 1 4.7456 -2.4716 6.1599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182493535.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:42 Heat of formation + Delta-G solvation = -10.909347 kcal Electronic energy + Delta-G solvation = -28002.662531 eV Core-core repulsion = 24121.680535 eV Total energy + Delta-G solvation = -3880.981996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.23337 -41.28103 -39.35048 -38.19032 -36.47761 -35.25490 -34.38926 -33.03512 -31.22673 -30.28978 -28.89642 -28.11500 -26.97850 -26.57209 -25.13636 -23.71013 -22.42261 -22.25999 -20.62655 -19.86520 -19.36904 -18.98573 -18.14052 -17.51838 -17.12665 -16.64628 -16.47007 -16.37038 -15.67827 -15.42310 -15.37491 -15.24396 -15.15485 -14.71795 -14.68023 -14.27644 -13.85004 -13.55394 -13.54175 -13.45912 -13.12844 -13.02234 -12.90852 -12.79495 -12.58342 -12.46040 -12.41636 -12.11470 -11.94720 -11.55761 -11.45560 -11.29185 -11.18727 -10.90091 -10.86457 -10.76917 -9.84954 -9.47885 -8.94602 -7.90265 -5.18841 0.44722 1.06834 1.40595 1.48249 1.51901 1.57862 1.93381 2.38858 2.59001 2.75681 3.40954 3.44842 3.62946 3.65895 3.80298 3.84883 4.05642 4.22281 4.32838 4.34197 4.35851 4.37852 4.42132 4.58887 4.68919 4.71915 4.77167 4.84584 4.86123 4.88145 4.94343 5.03196 5.08336 5.10008 5.15272 5.26001 5.35600 5.41164 5.48544 5.53791 5.61824 5.67241 6.31075 6.49904 6.63873 6.67027 7.12780 7.37526 8.14539 8.37527 9.33325 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025386 B = 0.002789 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.708687 B =10035.307444 C =10597.982153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 H 0.103 0.897 4 C 0.104 3.896 5 N -0.604 5.604 6 C 0.610 3.390 7 O -0.587 6.587 8 C -0.072 4.072 9 C 0.059 3.941 10 N -0.455 5.455 11 C 0.060 3.940 12 C 0.384 3.616 13 O -0.439 6.439 14 N -0.477 5.477 15 C 0.125 3.875 16 C -0.066 4.066 17 C -0.121 4.121 18 C 0.169 3.831 19 N -0.743 5.743 20 C -0.241 4.241 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.974 3.026 25 H -0.277 1.277 26 H -0.298 1.298 27 H -0.278 1.278 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.212 0.788 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.426 0.574 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.031 0.969 45 H 0.374 0.626 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 -1.300 -29.797 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 H 0.121 0.879 4 C -0.018 4.018 5 N -0.335 5.335 6 C 0.401 3.599 7 O -0.469 6.469 8 C -0.200 4.200 9 C -0.080 4.080 10 N -0.148 5.148 11 C -0.080 4.080 12 C 0.082 3.918 13 O -0.243 6.243 14 N -0.208 5.208 15 C 0.002 3.998 16 C -0.068 4.068 17 C -0.178 4.178 18 C 0.042 3.958 19 N -0.386 5.386 20 C -0.373 4.373 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.623 5.623 24 Si 0.803 3.197 25 H -0.203 1.203 26 H -0.225 1.225 27 H -0.204 1.204 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.229 0.771 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.286 0.714 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.043 0.957 44 H 0.048 0.952 45 H 0.206 0.794 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -11.912 -1.002 -29.207 31.559 hybrid contribution 1.162 -0.939 0.714 1.656 sum -10.750 -1.942 -28.494 30.516 Atomic orbital electron populations 1.21805 0.93384 1.01263 1.02421 1.22164 0.97210 0.99654 0.91974 0.87931 1.22897 1.02226 0.79150 0.97499 1.48766 1.61206 1.06680 1.16839 1.16909 0.77173 0.81913 0.83924 1.90787 1.56239 1.31826 1.68014 1.19983 1.13172 0.90707 0.96092 1.22877 0.98936 1.00732 0.85498 1.46035 1.46328 1.07260 1.15197 1.22535 1.02776 0.95985 0.86665 1.20426 1.01472 0.79513 0.90438 1.84867 1.38712 1.62304 1.38424 1.70707 1.17472 1.28994 1.03655 1.22236 0.96837 0.98062 0.82626 1.21579 0.95266 0.94555 0.95362 1.21741 0.97010 1.00724 0.98300 1.20861 0.94256 0.93255 0.87398 1.42623 1.57252 1.12801 1.25920 1.19622 1.19869 0.96016 1.01813 0.90421 1.25579 1.03411 0.96778 1.01282 1.69831 1.50808 1.10055 1.31584 0.85198 0.78954 0.77084 0.78436 1.20264 1.22462 1.20423 0.91849 0.91029 0.93973 0.86103 0.91029 0.77089 0.87988 0.87432 0.87647 0.71353 0.91961 0.92968 0.91281 0.92703 0.95026 0.95728 0.95153 0.79354 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 7.93 71.98 0.57 -2.54 16 2 C -0.09 -2.41 3.30 -9.89 -0.03 -2.44 16 3 H 0.10 2.42 7.71 -2.38 -0.02 2.40 16 4 C 0.10 2.83 6.23 86.53 0.54 3.37 16 5 N -0.60 -20.43 3.32 -811.98 -2.69 -23.12 16 6 C 0.61 21.40 7.90 86.61 0.68 22.08 16 7 O -0.59 -24.51 17.14 -4.14 -0.07 -24.58 16 8 C -0.07 -1.94 6.84 40.40 0.28 -1.66 16 9 C 0.06 1.13 11.29 83.53 0.94 2.08 16 10 N -0.45 -5.94 3.16 -662.75 -2.09 -8.03 16 11 C 0.06 0.16 11.11 127.77 1.42 1.58 16 12 C 0.38 6.48 9.03 179.84 1.62 8.10 16 13 O -0.44 -4.63 13.55 -87.63 -1.19 -5.82 16 14 N -0.48 -11.38 8.35 -303.15 -2.53 -13.92 16 15 C 0.13 4.84 5.71 86.53 0.49 5.33 16 16 C -0.07 -2.30 0.73 -51.27 -0.04 -2.34 16 17 C -0.12 -4.30 7.07 71.98 0.51 -3.79 16 18 C 0.17 6.89 4.87 86.38 0.42 7.31 16 19 N -0.74 -38.93 5.13 -343.45 -1.76 -40.69 16 20 C -0.24 -13.81 9.99 84.03 0.84 -12.97 16 21 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 23 N -0.97 -61.94 13.06 21.65 0.28 -61.65 16 24 Si 0.97 47.55 29.55 68.60 2.03 49.57 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 28 H 0.06 1.46 6.84 -2.38 -0.02 1.44 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.11 6.76 -2.39 -0.02 1.10 16 31 H 0.12 3.14 5.16 -2.39 -0.01 3.12 16 32 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.21 3.17 8.06 -2.91 -0.02 3.14 16 34 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.10 0.07 8.13 -2.39 -0.02 0.05 16 37 H 0.43 0.03 9.06 -74.06 -0.67 -0.65 16 38 H 0.06 2.54 7.83 -2.39 -0.02 2.53 16 39 H 0.05 2.33 7.60 -2.39 -0.02 2.31 16 40 H 0.07 2.25 6.89 -2.39 -0.02 2.23 16 41 H 0.05 1.85 6.71 -2.38 -0.02 1.83 16 42 H 0.03 1.33 6.78 -2.39 -0.02 1.31 16 43 H 0.02 1.00 8.10 -2.39 -0.02 0.98 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.37 21.20 6.19 -92.71 -0.57 20.63 16 46 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -81.74 370.76 0.46 -81.28 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.23 Total: 27.06 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: 8.72 Total: 19.90 kcal Atomic # 7 Polarization: -138.61 SS G_CDS: -8.80 Total: -147.41 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.26 Total: -30.40 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -81.74 0.46 -81.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182493535.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.368 kcal (2) G-P(sol) polarization free energy of solvation -81.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds