Wall clock time and date at job start Tue Mar 31 2020 14:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.49672 * 2 1 4 4 C 1.53626 * 109.63722 * 239.89595 * 2 1 3 5 5 N 1.46929 * 108.53896 * 294.86632 * 4 2 1 6 6 C 1.34775 * 120.62881 * 126.37142 * 5 4 2 7 7 O 1.21736 * 119.99858 * 358.87956 * 6 5 4 8 8 C 1.46380 * 119.99930 * 178.88439 * 6 5 4 9 9 C 1.36721 * 126.82317 * 334.22763 * 8 6 5 10 10 N 1.33225 * 107.96052 * 179.74130 * 9 8 6 11 11 C 1.31542 * 109.76353 * 0.02562 * 10 9 8 12 12 O 1.35200 * 125.49282 * 179.97438 * 11 10 9 13 13 N 1.34948 * 109.01132 * 0.02562 * 11 10 9 14 14 C 1.46500 * 126.54141 * 179.97438 * 13 11 10 15 15 C 1.46932 * 118.73909 * 306.09184 * 5 4 2 16 16 C 1.53187 * 108.77442 * 53.86112 * 15 5 4 17 17 C 1.53040 * 109.31512 * 305.36480 * 16 15 5 18 18 H 1.09003 * 109.45806 * 301.34346 * 17 16 15 19 19 C 1.53001 * 109.45700 * 181.38425 * 17 16 15 20 20 N 1.46498 * 109.46997 * 65.00416 * 19 17 16 21 21 C 1.36940 * 120.00116 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99410 * 359.97438 * 21 20 19 23 23 C 1.38804 * 120.00169 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00120 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00159 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47199 * 89.99885 * 25 23 21 27 27 H 1.48499 * 109.47161 * 210.00044 * 25 23 21 28 28 H 1.48506 * 109.46991 * 330.00240 * 25 23 21 29 29 H 1.08994 * 109.47265 * 299.93728 * 1 2 3 30 30 H 1.08999 * 109.47175 * 59.94106 * 1 2 3 31 31 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.73784 * 175.13271 * 4 2 1 33 33 H 1.08992 * 109.66264 * 54.55840 * 4 2 1 34 34 H 1.07993 * 126.01934 * 359.76065 * 9 8 6 35 35 H 0.96696 * 114.00477 * 90.02500 * 12 11 10 36 36 H 1.08999 * 109.46928 * 264.57696 * 14 13 11 37 37 H 1.08998 * 109.47468 * 24.57275 * 14 13 11 38 38 H 1.09001 * 109.47138 * 144.58147 * 14 13 11 39 39 H 1.09003 * 109.58273 * 173.65211 * 15 5 4 40 40 H 1.08997 * 109.58291 * 294.07236 * 15 5 4 41 41 H 1.09007 * 109.49406 * 65.31842 * 16 15 5 42 42 H 1.08994 * 109.49331 * 185.37871 * 16 15 5 43 43 H 1.09002 * 109.46786 * 184.99487 * 19 17 16 44 44 H 1.08998 * 109.47456 * 304.99666 * 19 17 16 45 45 H 0.96998 * 120.00156 * 359.97438 * 20 19 17 46 46 H 0.96995 * 120.00008 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0463 -0.7257 -1.2517 5 7 1.6516 -2.1386 -1.1688 6 6 0.9749 -2.7228 -2.1773 7 8 0.6672 -2.0738 -3.1602 8 6 0.6098 -4.1377 -2.0907 9 6 1.2465 -5.1053 -1.3643 10 7 0.5978 -6.2537 -1.5521 11 6 -0.4199 -6.0621 -2.3632 12 8 -1.2905 -7.0138 -2.7686 13 7 -0.4542 -4.7629 -2.7263 14 6 -1.4288 -4.1324 -3.6200 15 6 2.0140 -2.9040 0.0319 16 6 1.5030 -2.1553 1.2668 17 6 2.0408 -0.7226 1.2487 18 1 3.1306 -0.7440 1.2357 19 6 1.5606 0.0179 2.4985 20 7 2.1479 -0.6016 3.6890 21 6 1.8600 -0.1047 4.9322 22 1 1.2002 0.7441 5.0348 23 6 2.4161 -0.6920 6.0602 24 7 2.1397 -0.2142 7.2551 25 14 3.5567 -2.1606 5.8827 26 1 4.9569 -1.6860 5.7441 27 1 3.4434 -3.0237 7.0858 28 1 3.1765 -2.9397 4.6769 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5147 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1327 -0.6520 -1.2981 33 1 1.6090 -0.2759 -2.1430 34 1 2.1210 -4.9636 -0.7467 35 1 -2.0623 -7.1113 -2.1943 36 1 -1.0253 -4.0988 -4.6320 37 1 -2.3526 -4.7108 -3.6163 38 1 -1.6336 -3.1183 -3.2768 39 1 1.5554 -3.8919 -0.0123 40 1 3.0979 -3.0043 0.0879 41 1 0.4132 -2.1350 1.2548 42 1 1.8475 -2.6624 2.1680 43 1 1.8685 1.0620 2.4429 44 1 0.4737 -0.0377 2.5586 45 1 2.7408 -1.3637 3.5967 46 1 2.5280 -0.6248 8.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184935702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:59 Heat of formation + Delta-G solvation = 24.683605 kcal Electronic energy + Delta-G solvation = -28286.308969 eV Core-core repulsion = 24406.870399 eV Total energy + Delta-G solvation = -3879.438570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.69855 -40.36837 -38.23525 -37.68772 -35.36102 -34.45724 -33.57117 -31.99305 -30.74177 -29.86090 -27.63674 -27.31263 -26.72576 -24.21977 -23.23181 -22.71328 -22.01421 -21.20000 -20.09709 -19.05559 -18.59127 -17.66192 -17.24835 -17.09999 -16.41304 -15.97007 -15.52794 -15.08525 -14.69373 -14.51847 -14.31733 -14.19062 -14.03547 -13.72888 -13.51679 -13.23265 -13.11391 -12.83621 -12.79498 -12.56918 -12.39796 -12.18399 -11.71563 -11.50692 -11.37878 -11.08351 -10.85237 -10.71770 -10.49708 -10.31760 -10.22101 -10.15378 -10.10878 -9.95617 -9.59233 -8.92978 -8.89338 -8.66815 -7.23244 -5.77815 -3.13209 0.88342 1.73059 2.29028 2.78256 2.96547 3.34787 3.37669 3.39583 3.44342 4.11761 4.32784 4.53358 4.57638 4.70072 4.77257 4.78980 4.85094 4.88502 4.99278 5.10649 5.11918 5.33131 5.39561 5.50458 5.53972 5.58840 5.63013 5.69583 5.72409 5.78784 5.90611 5.96613 6.03902 6.07908 6.13012 6.24398 6.27760 6.33740 6.48156 6.67500 6.80192 7.07862 7.12439 7.40251 7.86114 7.98813 8.41333 9.20654 9.92864 10.12688 11.40805 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003364 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.629743 B = 8320.643524 C = 9393.627920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.119 3.881 5 N -0.587 5.587 6 C 0.595 3.405 7 O -0.548 6.548 8 C -0.071 4.071 9 C 0.041 3.959 10 N -0.484 5.484 11 C 0.394 3.606 12 O -0.439 6.439 13 N -0.429 5.429 14 C 0.074 3.926 15 C 0.072 3.928 16 C -0.129 4.129 17 C -0.094 4.094 18 H 0.073 0.927 19 C 0.163 3.837 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.200 0.800 35 H 0.405 0.595 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.026 0.974 44 H 0.029 0.971 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.628 -8.286 -22.864 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.104 0.896 4 C -0.002 4.002 5 N -0.319 5.319 6 C 0.383 3.617 7 O -0.427 6.427 8 C -0.187 4.187 9 C -0.113 4.113 10 N -0.213 5.213 11 C 0.095 3.905 12 O -0.240 6.240 13 N -0.122 5.122 14 C -0.068 4.068 15 C -0.049 4.049 16 C -0.167 4.167 17 C -0.113 4.113 18 H 0.091 0.909 19 C 0.036 3.964 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.216 0.784 35 H 0.262 0.738 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.526 -8.639 -23.467 25.610 hybrid contribution 0.170 -0.345 0.098 0.397 sum -5.356 -8.985 -23.370 25.604 Atomic orbital electron populations 1.21861 0.94815 1.01889 1.01704 1.21537 0.96717 0.99581 0.93820 0.89632 1.21856 0.99631 0.79250 0.99499 1.47725 1.55060 1.11851 1.17269 1.16597 0.78193 0.84006 0.82939 1.90818 1.55728 1.64779 1.31358 1.20581 0.97052 0.95301 1.05777 1.23027 1.01461 0.86849 0.99941 1.70367 1.07180 1.27299 1.16409 1.20243 0.94085 0.79252 0.96913 1.84829 1.35676 1.50871 1.52657 1.45645 1.23007 1.08045 1.35543 1.22144 0.90776 0.99805 0.94042 1.22742 1.01074 0.96871 0.84253 1.21989 1.01782 0.95959 0.96939 1.21387 1.00335 0.94735 0.94846 0.90907 1.20691 0.96261 0.94882 0.84604 1.42727 1.57507 1.37264 1.02611 1.19056 1.24216 1.12089 0.81957 0.89339 1.24679 1.00313 0.99149 0.95108 1.69701 1.48352 1.43206 0.97076 0.86546 0.81488 0.83557 0.76885 1.21111 1.21762 1.20279 0.91711 0.93227 0.92762 0.91007 0.88852 0.78400 0.73756 0.89625 0.89322 0.88726 0.87472 0.90502 0.90998 0.89807 0.95589 0.95337 0.80709 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.39 37.16 0.31 -1.39 16 2 C -0.10 -1.09 2.72 -90.27 -0.25 -1.34 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 4 C 0.12 1.25 5.87 -3.48 -0.02 1.23 16 5 N -0.59 -6.40 2.40 -174.15 -0.42 -6.82 16 6 C 0.59 7.29 7.54 -12.99 -0.10 7.20 16 7 O -0.55 -7.92 15.23 5.16 0.08 -7.84 16 8 C -0.07 -0.81 6.55 -81.98 -0.54 -1.35 16 9 C 0.04 0.45 9.57 -17.50 -0.17 0.28 16 10 N -0.48 -5.95 11.22 -14.62 -0.16 -6.11 16 11 C 0.39 4.18 9.01 -89.59 -0.81 3.38 16 12 O -0.44 -3.41 13.44 -17.30 -0.23 -3.65 16 13 N -0.43 -4.42 3.20 -122.12 -0.39 -4.81 16 14 C 0.07 0.55 10.41 59.85 0.62 1.17 16 15 C 0.07 0.73 5.39 -3.71 -0.02 0.71 16 16 C -0.13 -1.63 4.90 -26.61 -0.13 -1.76 16 17 C -0.09 -1.27 1.96 -90.57 -0.18 -1.44 16 18 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 19 C 0.16 2.93 5.18 -4.04 -0.02 2.90 16 20 N -0.76 -17.11 5.12 -59.91 -0.31 -17.42 16 21 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 22 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 23 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 24 N -0.94 -29.17 13.97 55.49 0.78 -28.39 16 25 Si 0.88 21.58 27.73 -169.99 -4.71 16.86 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.18 6.52 56.52 0.37 -5.81 16 29 H 0.06 0.81 6.58 -51.93 -0.34 0.47 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.67 5.97 -51.93 -0.31 0.36 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.04 7.00 -51.93 -0.36 0.67 16 34 H 0.20 1.71 5.76 -52.49 -0.30 1.41 16 35 H 0.40 1.02 9.06 45.56 0.41 1.43 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.40 8.03 -51.93 -0.42 -0.02 16 38 H 0.09 0.76 7.55 -51.93 -0.39 0.37 16 39 H 0.11 1.00 3.41 -51.93 -0.18 0.83 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.96 6.34 -51.92 -0.33 0.63 16 42 H 0.08 1.20 7.15 -51.93 -0.37 0.83 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.03 0.53 6.74 -51.93 -0.35 0.18 16 45 H 0.36 7.86 4.71 -40.82 -0.19 7.67 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 358.18 15.07 5.40 5.40 Total: -1.00 -35.72 358.18 -7.20 -42.92 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.68 Total: 7.18 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.54 Total: 2.68 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.51 Total: -63.55 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.15 Total: -11.48 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.72 -7.20 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.601 kcal (2) G-P(sol) polarization free energy of solvation -35.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds