Wall clock time and date at job start Tue Mar 31 2020 14:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.49672 * 2 1 4 4 C 1.53626 * 109.63722 * 239.89595 * 2 1 3 5 5 N 1.46929 * 108.53896 * 294.86632 * 4 2 1 6 6 C 1.34775 * 120.62881 * 126.37142 * 5 4 2 7 7 O 1.21736 * 119.99858 * 358.87956 * 6 5 4 8 8 C 1.46380 * 119.99930 * 178.88439 * 6 5 4 9 9 C 1.36721 * 126.82317 * 334.22763 * 8 6 5 10 10 N 1.33225 * 107.96052 * 179.74130 * 9 8 6 11 11 C 1.31542 * 109.76353 * 0.02562 * 10 9 8 12 12 O 1.35200 * 125.49282 * 179.97438 * 11 10 9 13 13 N 1.34948 * 109.01132 * 0.02562 * 11 10 9 14 14 C 1.46500 * 126.54141 * 179.97438 * 13 11 10 15 15 C 1.46932 * 118.73909 * 306.09184 * 5 4 2 16 16 C 1.53187 * 108.77442 * 53.86112 * 15 5 4 17 17 C 1.53040 * 109.31512 * 305.36480 * 16 15 5 18 18 H 1.09003 * 109.45806 * 301.34346 * 17 16 15 19 19 C 1.53001 * 109.45700 * 181.38425 * 17 16 15 20 20 N 1.46498 * 109.46997 * 65.00416 * 19 17 16 21 21 C 1.36940 * 120.00116 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99410 * 359.97438 * 21 20 19 23 23 C 1.38804 * 120.00169 * 179.97438 * 21 20 19 24 24 N 1.31619 * 120.00120 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00159 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47199 * 89.99885 * 25 23 21 27 27 H 1.48499 * 109.47161 * 210.00044 * 25 23 21 28 28 H 1.48506 * 109.46991 * 330.00240 * 25 23 21 29 29 H 1.08994 * 109.47265 * 299.93728 * 1 2 3 30 30 H 1.08999 * 109.47175 * 59.94106 * 1 2 3 31 31 H 1.09002 * 109.47004 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.73784 * 175.13271 * 4 2 1 33 33 H 1.08992 * 109.66264 * 54.55840 * 4 2 1 34 34 H 1.07993 * 126.01934 * 359.76065 * 9 8 6 35 35 H 0.96696 * 114.00477 * 90.02500 * 12 11 10 36 36 H 1.08999 * 109.46928 * 264.57696 * 14 13 11 37 37 H 1.08998 * 109.47468 * 24.57275 * 14 13 11 38 38 H 1.09001 * 109.47138 * 144.58147 * 14 13 11 39 39 H 1.09003 * 109.58273 * 173.65211 * 15 5 4 40 40 H 1.08997 * 109.58291 * 294.07236 * 15 5 4 41 41 H 1.09007 * 109.49406 * 65.31842 * 16 15 5 42 42 H 1.08994 * 109.49331 * 185.37871 * 16 15 5 43 43 H 1.09002 * 109.46786 * 184.99487 * 19 17 16 44 44 H 1.08998 * 109.47456 * 304.99666 * 19 17 16 45 45 H 0.96998 * 120.00156 * 359.97438 * 20 19 17 46 46 H 0.96995 * 120.00008 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0463 -0.7257 -1.2517 5 7 1.6516 -2.1386 -1.1688 6 6 0.9749 -2.7228 -2.1773 7 8 0.6672 -2.0738 -3.1602 8 6 0.6098 -4.1377 -2.0907 9 6 1.2465 -5.1053 -1.3643 10 7 0.5978 -6.2537 -1.5521 11 6 -0.4199 -6.0621 -2.3632 12 8 -1.2905 -7.0138 -2.7686 13 7 -0.4542 -4.7629 -2.7263 14 6 -1.4288 -4.1324 -3.6200 15 6 2.0140 -2.9040 0.0319 16 6 1.5030 -2.1553 1.2668 17 6 2.0408 -0.7226 1.2487 18 1 3.1306 -0.7440 1.2357 19 6 1.5606 0.0179 2.4985 20 7 2.1479 -0.6016 3.6890 21 6 1.8600 -0.1047 4.9322 22 1 1.2002 0.7441 5.0348 23 6 2.4161 -0.6920 6.0602 24 7 2.1397 -0.2142 7.2551 25 14 3.5567 -2.1606 5.8827 26 1 4.9569 -1.6860 5.7441 27 1 3.4434 -3.0237 7.0858 28 1 3.1765 -2.9397 4.6769 29 1 -0.3633 0.5128 0.8905 30 1 -0.3633 0.5147 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1327 -0.6520 -1.2981 33 1 1.6090 -0.2759 -2.1430 34 1 2.1210 -4.9636 -0.7467 35 1 -2.0623 -7.1113 -2.1943 36 1 -1.0253 -4.0988 -4.6320 37 1 -2.3526 -4.7108 -3.6163 38 1 -1.6336 -3.1183 -3.2768 39 1 1.5554 -3.8919 -0.0123 40 1 3.0979 -3.0043 0.0879 41 1 0.4132 -2.1350 1.2548 42 1 1.8475 -2.6624 2.1680 43 1 1.8685 1.0620 2.4429 44 1 0.4737 -0.0377 2.5586 45 1 2.7408 -1.3637 3.5967 46 1 2.5280 -0.6248 8.0433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184935702.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:58 Heat of formation + Delta-G solvation = -3.400841 kcal Electronic energy + Delta-G solvation = -28287.526802 eV Core-core repulsion = 24406.870399 eV Total energy + Delta-G solvation = -3880.656403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.46602 -41.28479 -39.24067 -38.35917 -36.75612 -35.39533 -34.76652 -33.48594 -32.26861 -30.69580 -28.81250 -28.17636 -27.63535 -25.56152 -24.43484 -23.77526 -22.82852 -22.54499 -20.98918 -20.03593 -19.68973 -19.10901 -18.15820 -17.93458 -17.25259 -16.91229 -16.56210 -16.36028 -16.00728 -15.53549 -15.35063 -15.21644 -15.17386 -14.80772 -14.66689 -14.56151 -13.97362 -13.84900 -13.69859 -13.59597 -13.48566 -13.21707 -13.15772 -12.80551 -12.68742 -12.37238 -12.13156 -12.01067 -11.82936 -11.62070 -11.51650 -11.28037 -11.22018 -10.97050 -10.93188 -10.83887 -9.78423 -9.48823 -9.24355 -7.99730 -5.32973 0.10037 1.01116 1.40892 1.45891 1.51785 1.53296 1.95681 2.12221 2.52392 2.77189 3.30776 3.32101 3.58121 3.73171 3.73913 3.83593 3.87284 4.01346 4.12956 4.19827 4.23408 4.28385 4.42113 4.46809 4.55401 4.65834 4.72583 4.75467 4.81389 4.85745 4.91787 4.99284 5.07101 5.17494 5.19540 5.22971 5.25574 5.32063 5.49569 5.52441 5.61582 5.79037 6.24104 6.25344 6.51531 6.64647 6.97938 7.12234 7.88358 8.08803 9.22173 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015810 B = 0.003364 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.629743 B = 8320.643524 C = 9393.627920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.123 3.877 5 N -0.584 5.584 6 C 0.596 3.404 7 O -0.575 6.575 8 C -0.091 4.091 9 C 0.044 3.956 10 N -0.516 5.516 11 C 0.400 3.600 12 O -0.441 6.441 13 N -0.432 5.432 14 C 0.072 3.928 15 C 0.079 3.921 16 C -0.126 4.126 17 C -0.084 4.084 18 H 0.084 0.916 19 C 0.160 3.840 20 N -0.754 5.754 21 C -0.234 4.234 22 H 0.051 0.949 23 C -0.068 4.068 24 N -0.988 5.988 25 Si 0.956 3.044 26 H -0.278 1.278 27 H -0.299 1.299 28 H -0.241 1.241 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.219 0.781 35 H 0.428 0.572 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.368 0.632 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.702 -10.106 -24.939 27.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.114 0.886 4 C 0.001 3.999 5 N -0.315 5.315 6 C 0.385 3.615 7 O -0.457 6.457 8 C -0.207 4.207 9 C -0.109 4.109 10 N -0.245 5.245 11 C 0.100 3.900 12 O -0.245 6.245 13 N -0.125 5.125 14 C -0.070 4.070 15 C -0.042 4.042 16 C -0.164 4.164 17 C -0.103 4.103 18 H 0.102 0.898 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.365 4.365 22 H 0.069 0.931 23 C -0.259 4.259 24 N -0.639 5.639 25 Si 0.783 3.217 26 H -0.204 1.204 27 H -0.226 1.226 28 H -0.165 1.165 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.235 0.765 35 H 0.290 0.710 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.104 0.896 39 H 0.134 0.866 40 H 0.119 0.881 41 H 0.079 0.921 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.202 0.798 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.629 -10.458 -25.593 28.032 hybrid contribution -0.268 0.291 0.724 0.825 sum -4.896 -10.166 -24.869 27.310 Atomic orbital electron populations 1.21807 0.95352 1.01310 1.01393 1.21485 0.96157 1.00072 0.93213 0.88647 1.21864 1.00708 0.78843 0.98455 1.47752 1.54535 1.12033 1.17141 1.16701 0.77834 0.84243 0.82758 1.90801 1.56889 1.65480 1.32480 1.20580 0.98056 0.95091 1.07006 1.23367 1.01651 0.86330 0.99596 1.70367 1.08268 1.28085 1.17796 1.20359 0.94051 0.79609 0.95966 1.84791 1.36365 1.49968 1.53409 1.45808 1.23077 1.08035 1.35588 1.22306 0.91462 0.99816 0.93367 1.22776 1.02450 0.96556 0.82448 1.21921 1.01184 0.95502 0.97801 1.21288 1.00881 0.94888 0.93199 0.89816 1.20839 0.95594 0.95019 0.85104 1.42688 1.57739 1.37533 1.02095 1.19026 1.22578 1.10646 0.84274 0.93133 1.25571 1.02801 1.02956 0.94545 1.69902 1.50442 1.45412 0.98131 0.85390 0.78970 0.79524 0.77829 1.20390 1.22642 1.16474 0.93053 0.92464 0.93473 0.89015 0.89302 0.76532 0.71029 0.89723 0.86317 0.89598 0.86580 0.88125 0.92068 0.91034 0.96169 0.96201 0.79810 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.39 71.98 0.60 -2.56 16 2 C -0.09 -1.83 2.72 -10.57 -0.03 -1.86 16 3 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.12 2.25 5.87 86.51 0.51 2.76 16 5 N -0.58 -11.27 2.40 -823.09 -1.98 -13.25 16 6 C 0.60 13.60 7.54 86.36 0.65 14.25 16 7 O -0.58 -15.97 15.23 -4.46 -0.07 -16.04 16 8 C -0.09 -1.93 6.55 39.80 0.26 -1.67 16 9 C 0.04 0.87 9.57 84.13 0.81 1.68 16 10 N -0.52 -11.72 11.22 -313.65 -3.52 -15.24 16 11 C 0.40 7.72 9.01 179.99 1.62 9.34 16 12 O -0.44 -5.82 13.44 -84.80 -1.14 -6.96 16 13 N -0.43 -8.19 3.20 -652.00 -2.09 -10.28 16 14 C 0.07 0.95 10.41 127.77 1.33 2.28 16 15 C 0.08 1.35 5.39 86.36 0.47 1.81 16 16 C -0.13 -2.90 4.90 30.67 0.15 -2.75 16 17 C -0.08 -2.06 1.96 -10.76 -0.02 -2.09 16 18 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 19 C 0.16 5.66 5.18 86.38 0.45 6.10 16 20 N -0.75 -33.46 5.12 -343.46 -1.76 -35.22 16 21 C -0.23 -13.20 10.47 84.03 0.88 -12.32 16 22 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 23 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 24 N -0.99 -63.29 13.97 21.65 0.30 -62.99 16 25 Si 0.96 43.94 27.73 68.60 1.90 45.84 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 28 H -0.24 -9.53 6.52 99.48 0.65 -8.88 16 29 H 0.05 1.27 6.58 -2.39 -0.02 1.25 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.12 5.97 -2.39 -0.01 1.10 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.78 7.00 -2.39 -0.02 1.77 16 34 H 0.22 3.11 5.76 -2.91 -0.02 3.09 16 35 H 0.43 1.03 9.06 -74.06 -0.67 0.36 16 36 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 0.79 8.03 -2.39 -0.02 0.77 16 38 H 0.09 1.31 7.55 -2.39 -0.02 1.29 16 39 H 0.12 1.83 3.41 -2.39 -0.01 1.83 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.54 6.34 -2.38 -0.02 1.53 16 42 H 0.07 1.85 7.15 -2.39 -0.02 1.84 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 44 H 0.02 0.75 6.74 -2.39 -0.02 0.73 16 45 H 0.37 15.13 4.71 -92.71 -0.44 14.70 16 46 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -78.64 358.18 -0.34 -78.97 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.13 Total: 23.66 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 8.14 Total: 11.49 kcal Atomic # 7 Polarization: -127.93 SS G_CDS: -9.04 Total: -136.97 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.21 Total: -22.99 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -78.64 -0.34 -78.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935702.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.572 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds