Wall clock time and date at job start Tue Mar 31 2020 14:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.52594 * 2 1 4 4 C 1.53199 * 109.49367 * 239.92029 * 2 1 3 5 5 N 1.46924 * 108.88994 * 185.48630 * 4 2 1 6 6 C 1.34785 * 120.62509 * 233.55810 * 5 4 2 7 7 O 1.21730 * 120.00187 * 0.88557 * 6 5 4 8 8 C 1.46381 * 119.99620 * 180.88561 * 6 5 4 9 9 C 1.36724 * 126.82386 * 25.77337 * 8 6 5 10 10 N 1.33222 * 107.95848 * 179.97438 * 9 8 6 11 11 C 1.31536 * 109.76788 * 0.02562 * 10 9 8 12 12 O 1.35206 * 125.49735 * 180.02562 * 11 10 9 13 13 N 1.34952 * 109.01142 * 359.72286 * 11 10 9 14 14 C 1.46498 * 126.54944 * 180.26923 * 13 11 10 15 15 C 1.46927 * 118.74276 * 53.53802 * 5 4 2 16 16 C 1.53185 * 108.77422 * 306.39041 * 15 5 4 17 17 C 1.53042 * 109.31317 * 54.63507 * 16 15 5 18 18 H 1.08992 * 109.46237 * 58.64139 * 17 16 15 19 19 C 1.53002 * 109.46084 * 178.61520 * 17 16 15 20 20 N 1.46502 * 109.47028 * 294.99801 * 19 17 16 21 21 C 1.36937 * 119.99961 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00078 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99819 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00221 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47399 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46871 * 120.00129 * 25 23 21 28 28 H 1.48503 * 109.46966 * 240.00032 * 25 23 21 29 29 H 1.09002 * 109.47458 * 180.08238 * 1 2 3 30 30 H 1.09005 * 109.46546 * 300.07812 * 1 2 3 31 31 H 1.08995 * 109.47412 * 60.07955 * 1 2 3 32 32 H 1.08995 * 109.58700 * 65.62612 * 4 2 1 33 33 H 1.08997 * 109.58345 * 305.34297 * 4 2 1 34 34 H 1.07994 * 126.02135 * 359.97438 * 9 8 6 35 35 H 0.96690 * 114.00015 * 90.02370 * 12 11 10 36 36 H 1.09000 * 109.47243 * 264.68304 * 14 13 11 37 37 H 1.09002 * 109.46800 * 24.67476 * 14 13 11 38 38 H 1.08991 * 109.47171 * 144.67534 * 14 13 11 39 39 H 1.09000 * 109.58653 * 66.17604 * 15 5 4 40 40 H 1.09002 * 109.58495 * 186.60076 * 15 5 4 41 41 H 1.08995 * 109.49772 * 174.58843 * 16 15 5 42 42 H 1.09006 * 109.50155 * 294.65366 * 16 15 5 43 43 H 1.09007 * 109.47227 * 54.99869 * 19 17 16 44 44 H 1.08993 * 109.47219 * 175.00010 * 19 17 16 45 45 H 0.96997 * 120.00023 * 0.02562 * 20 19 17 46 46 H 0.96994 * 120.00363 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5044 -0.8321 -1.1715 6 6 4.2805 -0.3908 -2.1813 7 8 3.7711 0.1178 -3.1629 8 6 5.7359 -0.5232 -2.0974 9 6 6.4341 -1.4488 -1.3727 10 7 7.7334 -1.2280 -1.5676 11 6 7.8940 -0.2065 -2.3806 12 8 9.0823 0.2895 -2.7929 13 7 6.6813 0.2625 -2.7423 14 6 6.4137 1.3879 -3.6411 15 6 4.1055 -1.4302 0.0284 16 6 3.5742 -0.6967 1.2638 17 6 2.0441 -0.7216 1.2483 18 1 1.6979 -1.7550 1.2361 19 6 1.5101 -0.0199 2.4986 20 7 1.8982 -0.7807 3.6889 21 6 1.5299 -0.3413 4.9325 22 1 0.9531 0.5658 5.0358 23 6 1.8972 -1.0626 6.0603 24 7 2.5997 -2.1684 5.9344 25 14 1.3942 -0.4636 7.7567 26 1 0.6151 0.7939 7.6268 27 1 0.5582 -1.4971 8.4188 28 1 2.6089 -0.2118 8.5730 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3632 0.5151 0.8894 31 1 -0.3634 0.5126 -0.8906 32 1 1.7637 -0.1580 -2.1389 33 1 1.6031 -1.7206 -1.2994 34 1 6.0076 -2.2225 -0.7518 35 1 9.4169 -0.1149 -3.6049 36 1 6.2631 2.2939 -3.0540 37 1 7.2615 1.5266 -4.3120 38 1 5.5177 1.1807 -4.2259 39 1 3.8356 -2.4847 0.0854 40 1 5.1899 -1.3304 -0.0177 41 1 3.9370 -1.1915 2.1647 42 1 3.9218 0.3364 1.2511 43 1 1.9280 0.9852 2.5576 44 1 0.4232 0.0411 2.4448 45 1 2.4165 -1.5953 3.5962 46 1 2.8559 -2.6726 6.7224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184935714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:02 Heat of formation + Delta-G solvation = 17.576490 kcal Electronic energy + Delta-G solvation = -27917.672688 eV Core-core repulsion = 24037.925931 eV Total energy + Delta-G solvation = -3879.746758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62420 -40.15724 -38.08858 -37.62841 -35.26089 -34.35137 -33.64452 -32.04444 -30.36130 -29.91714 -27.55208 -26.93446 -26.45347 -24.20932 -23.04091 -22.34709 -21.91156 -21.24142 -20.00939 -19.33142 -18.86992 -17.40263 -17.09040 -16.81870 -16.45809 -15.70490 -15.40440 -14.84801 -14.63692 -14.51619 -14.49590 -14.11562 -13.76932 -13.51202 -13.32279 -13.15420 -12.98609 -12.88426 -12.58104 -12.50598 -12.20609 -11.95200 -11.79515 -11.57640 -11.00178 -10.90441 -10.83068 -10.61313 -10.39723 -10.24711 -10.18963 -10.12476 -9.99293 -9.84665 -9.63468 -8.86793 -8.84823 -8.58194 -6.89553 -5.76118 -3.03919 0.92801 1.84436 2.30963 2.87536 3.03442 3.43781 3.45724 3.49703 3.51663 4.19803 4.39756 4.59058 4.62765 4.81536 4.84210 4.91081 4.94495 4.97982 5.11556 5.18716 5.28582 5.41778 5.50028 5.58361 5.62872 5.66121 5.75779 5.83979 5.89823 5.96790 6.03926 6.05012 6.12601 6.21069 6.27852 6.32059 6.43236 6.48807 6.62853 6.82999 6.93173 7.13827 7.20664 7.47278 7.71576 7.92066 8.43332 9.54622 10.12878 10.47428 11.46909 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.003021 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.795634 B = 9264.747229 C =10527.579398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.589 5.589 6 C 0.596 3.404 7 O -0.552 6.552 8 C -0.072 4.072 9 C 0.043 3.957 10 N -0.484 5.484 11 C 0.394 3.606 12 O -0.439 6.439 13 N -0.430 5.430 14 C 0.066 3.934 15 C 0.073 3.927 16 C -0.124 4.124 17 C -0.090 4.090 18 H 0.073 0.927 19 C 0.157 3.843 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.201 0.799 35 H 0.403 0.597 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.024 0.976 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 3.148 -22.398 23.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.001 4.001 5 N -0.320 5.320 6 C 0.384 3.616 7 O -0.431 6.431 8 C -0.188 4.188 9 C -0.111 4.111 10 N -0.212 5.212 11 C 0.094 3.906 12 O -0.240 6.240 13 N -0.123 5.123 14 C -0.076 4.076 15 C -0.049 4.049 16 C -0.163 4.163 17 C -0.109 4.109 18 H 0.092 0.908 19 C 0.029 3.971 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.090 0.910 34 H 0.218 0.782 35 H 0.261 0.739 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.042 0.958 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.942 3.632 -22.109 23.456 hybrid contribution -0.472 0.335 0.277 0.641 sum 6.470 3.967 -21.831 23.113 Atomic orbital electron populations 1.21824 0.94224 1.02278 1.02091 1.21467 0.96176 0.99934 0.94102 0.90934 1.21768 0.77662 1.01271 0.99422 1.47801 1.07062 1.59781 1.17360 1.16611 0.83843 0.78263 0.82922 1.90780 1.74942 1.45787 1.31615 1.20560 0.90883 1.00337 1.07039 1.23054 0.88002 1.00194 0.99821 1.70367 1.19361 1.13944 1.17548 1.20261 0.79891 0.92662 0.97739 1.84837 1.28950 1.62690 1.47475 1.45631 1.05830 1.25856 1.34956 1.22259 1.04636 0.87239 0.93493 1.22771 1.00201 0.97785 0.84146 1.21922 0.95946 1.01172 0.97211 1.21362 0.94780 1.00250 0.94482 0.90829 1.20749 0.96653 0.94034 0.85655 1.42378 1.65614 1.28784 1.00828 1.19262 1.27711 1.06045 0.83835 0.91279 1.24717 1.00983 0.97528 0.97771 1.69651 1.42968 1.17141 1.28443 0.86145 0.77652 0.77744 0.84826 1.20632 1.21908 1.21890 0.92406 0.91247 0.92993 0.89072 0.91022 0.78250 0.73924 0.90053 0.89301 0.87602 0.90331 0.87523 0.88992 0.91827 0.96651 0.95816 0.78286 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.83 37.16 0.33 -1.36 16 2 C -0.10 -1.21 2.42 -90.48 -0.22 -1.43 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.40 5.71 -3.71 -0.02 1.38 16 5 N -0.59 -7.11 2.97 -174.42 -0.52 -7.63 16 6 C 0.60 7.83 7.57 -12.98 -0.10 7.74 16 7 O -0.55 -8.30 14.70 5.16 0.08 -8.23 16 8 C -0.07 -0.88 6.55 -81.97 -0.54 -1.42 16 9 C 0.04 0.50 9.58 -17.50 -0.17 0.33 16 10 N -0.48 -6.25 11.22 -14.62 -0.16 -6.42 16 11 C 0.39 4.41 9.01 -89.59 -0.81 3.60 16 12 O -0.44 -3.63 13.44 -17.31 -0.23 -3.86 16 13 N -0.43 -4.70 3.20 -122.12 -0.39 -5.09 16 14 C 0.07 0.52 10.81 59.85 0.65 1.17 16 15 C 0.07 0.83 5.39 -3.71 -0.02 0.81 16 16 C -0.12 -1.78 5.25 -26.61 -0.14 -1.92 16 17 C -0.09 -1.34 1.73 -90.56 -0.16 -1.50 16 18 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 19 C 0.16 3.02 5.42 -4.04 -0.02 2.99 16 20 N -0.73 -17.90 5.32 -59.91 -0.32 -18.22 16 21 C -0.24 -6.56 9.99 -15.06 -0.15 -6.71 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 25 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.88 6.31 -51.93 -0.33 0.55 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.10 7.00 -51.93 -0.36 0.73 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.20 1.89 5.75 -52.49 -0.30 1.59 16 35 H 0.40 1.08 9.06 45.56 0.41 1.50 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.44 8.03 -51.93 -0.42 0.02 16 38 H 0.11 0.95 6.63 -51.93 -0.34 0.60 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.11 1.15 3.41 -51.93 -0.18 0.97 16 41 H 0.09 1.51 7.15 -51.93 -0.37 1.14 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.02 0.47 6.14 -51.93 -0.32 0.15 16 45 H 0.38 9.73 6.85 -40.82 -0.28 9.45 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -34.79 364.29 -7.66 -42.45 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.84 Total: 8.05 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.46 Total: 3.19 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: -0.67 Total: -64.40 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.16 Total: -12.08 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.79 -7.66 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.026 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds