Wall clock time and date at job start Tue Mar 31 2020 14:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.52594 * 2 1 4 4 C 1.53199 * 109.49367 * 239.92029 * 2 1 3 5 5 N 1.46924 * 108.88994 * 185.48630 * 4 2 1 6 6 C 1.34785 * 120.62509 * 233.55810 * 5 4 2 7 7 O 1.21730 * 120.00187 * 0.88557 * 6 5 4 8 8 C 1.46381 * 119.99620 * 180.88561 * 6 5 4 9 9 C 1.36724 * 126.82386 * 25.77337 * 8 6 5 10 10 N 1.33222 * 107.95848 * 179.97438 * 9 8 6 11 11 C 1.31536 * 109.76788 * 0.02562 * 10 9 8 12 12 O 1.35206 * 125.49735 * 180.02562 * 11 10 9 13 13 N 1.34952 * 109.01142 * 359.72286 * 11 10 9 14 14 C 1.46498 * 126.54944 * 180.26923 * 13 11 10 15 15 C 1.46927 * 118.74276 * 53.53802 * 5 4 2 16 16 C 1.53185 * 108.77422 * 306.39041 * 15 5 4 17 17 C 1.53042 * 109.31317 * 54.63507 * 16 15 5 18 18 H 1.08992 * 109.46237 * 58.64139 * 17 16 15 19 19 C 1.53002 * 109.46084 * 178.61520 * 17 16 15 20 20 N 1.46502 * 109.47028 * 294.99801 * 19 17 16 21 21 C 1.36937 * 119.99961 * 179.97438 * 20 19 17 22 22 H 1.07995 * 120.00078 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99819 * 179.97438 * 21 20 19 24 24 N 1.31613 * 120.00221 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47399 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46871 * 120.00129 * 25 23 21 28 28 H 1.48503 * 109.46966 * 240.00032 * 25 23 21 29 29 H 1.09002 * 109.47458 * 180.08238 * 1 2 3 30 30 H 1.09005 * 109.46546 * 300.07812 * 1 2 3 31 31 H 1.08995 * 109.47412 * 60.07955 * 1 2 3 32 32 H 1.08995 * 109.58700 * 65.62612 * 4 2 1 33 33 H 1.08997 * 109.58345 * 305.34297 * 4 2 1 34 34 H 1.07994 * 126.02135 * 359.97438 * 9 8 6 35 35 H 0.96690 * 114.00015 * 90.02370 * 12 11 10 36 36 H 1.09000 * 109.47243 * 264.68304 * 14 13 11 37 37 H 1.09002 * 109.46800 * 24.67476 * 14 13 11 38 38 H 1.08991 * 109.47171 * 144.67534 * 14 13 11 39 39 H 1.09000 * 109.58653 * 66.17604 * 15 5 4 40 40 H 1.09002 * 109.58495 * 186.60076 * 15 5 4 41 41 H 1.08995 * 109.49772 * 174.58843 * 16 15 5 42 42 H 1.09006 * 109.50155 * 294.65366 * 16 15 5 43 43 H 1.09007 * 109.47227 * 54.99869 * 19 17 16 44 44 H 1.08993 * 109.47219 * 175.00010 * 19 17 16 45 45 H 0.96997 * 120.00023 * 0.02562 * 20 19 17 46 46 H 0.96994 * 120.00363 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7238 -1.2497 5 7 3.5044 -0.8321 -1.1715 6 6 4.2805 -0.3908 -2.1813 7 8 3.7711 0.1178 -3.1629 8 6 5.7359 -0.5232 -2.0974 9 6 6.4341 -1.4488 -1.3727 10 7 7.7334 -1.2280 -1.5676 11 6 7.8940 -0.2065 -2.3806 12 8 9.0823 0.2895 -2.7929 13 7 6.6813 0.2625 -2.7423 14 6 6.4137 1.3879 -3.6411 15 6 4.1055 -1.4302 0.0284 16 6 3.5742 -0.6967 1.2638 17 6 2.0441 -0.7216 1.2483 18 1 1.6979 -1.7550 1.2361 19 6 1.5101 -0.0199 2.4986 20 7 1.8982 -0.7807 3.6889 21 6 1.5299 -0.3413 4.9325 22 1 0.9531 0.5658 5.0358 23 6 1.8972 -1.0626 6.0603 24 7 2.5997 -2.1684 5.9344 25 14 1.3942 -0.4636 7.7567 26 1 0.6151 0.7939 7.6268 27 1 0.5582 -1.4971 8.4188 28 1 2.6089 -0.2118 8.5730 29 1 -0.3634 -1.0277 0.0015 30 1 -0.3632 0.5151 0.8894 31 1 -0.3634 0.5126 -0.8906 32 1 1.7637 -0.1580 -2.1389 33 1 1.6031 -1.7206 -1.2994 34 1 6.0076 -2.2225 -0.7518 35 1 9.4169 -0.1149 -3.6049 36 1 6.2631 2.2939 -3.0540 37 1 7.2615 1.5266 -4.3120 38 1 5.5177 1.1807 -4.2259 39 1 3.8356 -2.4847 0.0854 40 1 5.1899 -1.3304 -0.0177 41 1 3.9370 -1.1915 2.1647 42 1 3.9218 0.3364 1.2511 43 1 1.9280 0.9852 2.5576 44 1 0.4232 0.0411 2.4448 45 1 2.4165 -1.5953 3.5962 46 1 2.8559 -2.6726 6.7224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184935714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:01 Heat of formation + Delta-G solvation = -9.258684 kcal Electronic energy + Delta-G solvation = -27918.836349 eV Core-core repulsion = 24037.925931 eV Total energy + Delta-G solvation = -3880.910418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.46619 -41.17453 -39.18930 -38.36506 -36.66170 -35.42517 -34.86427 -33.49278 -32.02005 -30.84146 -28.52334 -28.14205 -27.39135 -25.76132 -24.47078 -23.27376 -22.83998 -22.54319 -21.10074 -20.34674 -19.61164 -19.12294 -18.22444 -17.73009 -17.40533 -16.75990 -16.55177 -16.29752 -15.79432 -15.58036 -15.45268 -15.30778 -15.16489 -14.94610 -14.44973 -14.24073 -13.99071 -13.80908 -13.68596 -13.54687 -13.18419 -13.09155 -12.92765 -12.87173 -12.75863 -12.61700 -12.12434 -11.95101 -11.87967 -11.61623 -11.58097 -11.27917 -11.16425 -11.03443 -10.91581 -10.80483 -9.82116 -9.50440 -8.93490 -7.92540 -5.19681 0.06977 1.04478 1.46016 1.48570 1.48857 1.58619 1.96236 2.09199 2.57803 2.76894 3.28934 3.41090 3.70096 3.75070 3.75934 3.86584 3.88034 3.99895 4.18632 4.24525 4.27086 4.32289 4.42648 4.54650 4.56734 4.64579 4.69767 4.76664 4.81893 4.83451 4.92773 5.01324 5.12862 5.14940 5.21425 5.24692 5.30541 5.38404 5.49055 5.52033 5.54038 5.61713 6.21876 6.30797 6.52036 6.64677 6.93969 7.37558 8.14515 8.38541 9.30913 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.015545 B = 0.003021 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.795634 B = 9264.747229 C =10527.579398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 H 0.063 0.937 4 C 0.124 3.876 5 N -0.587 5.587 6 C 0.597 3.403 7 O -0.574 6.574 8 C -0.092 4.092 9 C 0.045 3.955 10 N -0.516 5.516 11 C 0.402 3.598 12 O -0.440 6.440 13 N -0.432 5.432 14 C 0.063 3.937 15 C 0.082 3.918 16 C -0.119 4.119 17 C -0.079 4.079 18 H 0.075 0.925 19 C 0.156 3.844 20 N -0.741 5.741 21 C -0.243 4.243 22 H 0.070 0.930 23 C -0.072 4.072 24 N -0.965 5.965 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.293 1.293 28 H -0.294 1.294 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.217 0.783 35 H 0.428 0.572 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.007 0.993 44 H 0.028 0.972 45 H 0.376 0.624 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 3.448 -23.612 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.081 0.919 4 C 0.002 3.998 5 N -0.318 5.318 6 C 0.386 3.614 7 O -0.455 6.455 8 C -0.209 4.209 9 C -0.108 4.108 10 N -0.246 5.246 11 C 0.102 3.898 12 O -0.245 6.245 13 N -0.125 5.125 14 C -0.078 4.078 15 C -0.039 4.039 16 C -0.157 4.157 17 C -0.098 4.098 18 H 0.093 0.907 19 C 0.030 3.970 20 N -0.384 5.384 21 C -0.375 4.375 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.616 5.616 25 Si 0.798 3.202 26 H -0.194 1.194 27 H -0.220 1.220 28 H -0.221 1.221 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.233 0.767 35 H 0.290 0.710 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.045 0.955 45 H 0.209 0.791 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 7.009 3.961 -23.369 24.717 hybrid contribution -0.443 0.316 0.587 0.800 sum 6.566 4.277 -22.783 24.092 Atomic orbital electron populations 1.21793 0.93173 1.02805 1.02339 1.21360 0.96973 0.99111 0.93246 0.91894 1.21779 0.77432 1.02044 0.98524 1.47824 1.07269 1.59497 1.17197 1.16720 0.84250 0.77764 0.82702 1.90764 1.75418 1.46879 1.32488 1.20520 0.90665 1.01450 1.08230 1.23342 0.87767 1.00253 0.99477 1.70364 1.19941 1.15344 1.18907 1.20364 0.80661 0.91837 0.96944 1.84798 1.27678 1.62872 1.49111 1.45797 1.05506 1.26206 1.34974 1.22429 1.05646 0.86275 0.93436 1.22736 1.00538 0.98227 0.82429 1.21803 0.95547 1.00584 0.97802 1.21251 0.95072 0.99981 0.93527 0.90707 1.20889 0.96809 0.93450 0.85857 1.42555 1.65443 1.28932 1.01513 1.19618 1.26831 1.05779 0.85279 0.91169 1.25475 1.01746 0.98030 1.01241 1.69789 1.44457 1.18337 1.29030 0.85152 0.77092 0.77547 0.80450 1.19382 1.21976 1.22136 0.91735 0.92666 0.91072 0.89073 0.89310 0.76730 0.70969 0.89964 0.86088 0.88662 0.88344 0.86696 0.91309 0.93050 0.97553 0.95466 0.79087 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.83 71.98 0.64 -2.42 16 2 C -0.09 -2.07 2.42 -10.70 -0.03 -2.10 16 3 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 4 C 0.12 2.65 5.71 86.37 0.49 3.14 16 5 N -0.59 -13.38 2.97 -823.93 -2.45 -15.83 16 6 C 0.60 15.08 7.57 86.36 0.65 15.73 16 7 O -0.57 -16.78 14.70 -4.44 -0.07 -16.84 16 8 C -0.09 -2.17 6.55 39.80 0.26 -1.91 16 9 C 0.05 1.01 9.58 84.13 0.81 1.81 16 10 N -0.52 -12.77 11.22 -313.65 -3.52 -16.29 16 11 C 0.40 8.38 9.01 179.99 1.62 10.00 16 12 O -0.44 -6.30 13.44 -84.86 -1.14 -7.44 16 13 N -0.43 -8.87 3.20 -651.99 -2.09 -10.96 16 14 C 0.06 0.91 10.81 127.77 1.38 2.29 16 15 C 0.08 1.78 5.39 86.36 0.47 2.24 16 16 C -0.12 -3.40 5.25 30.67 0.16 -3.23 16 17 C -0.08 -2.33 1.73 -10.75 -0.02 -2.35 16 18 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 19 C 0.16 6.04 5.42 86.38 0.47 6.51 16 20 N -0.74 -36.68 5.32 -343.45 -1.83 -38.51 16 21 C -0.24 -13.50 9.99 84.03 0.84 -12.66 16 22 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -58.12 13.06 21.65 0.28 -57.84 16 25 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.34 6.31 -2.38 -0.02 1.32 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.09 2.02 7.00 -2.39 -0.02 2.01 16 33 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.22 3.78 5.75 -2.91 -0.02 3.76 16 35 H 0.43 1.18 9.06 -74.06 -0.67 0.51 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 0.90 8.03 -2.39 -0.02 0.88 16 38 H 0.09 1.62 6.63 -2.39 -0.02 1.60 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.12 2.35 3.41 -2.39 -0.01 2.34 16 41 H 0.07 2.30 7.15 -2.39 -0.02 2.29 16 42 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.01 0.26 8.14 -2.38 -0.02 0.25 16 44 H 0.03 1.05 6.14 -2.39 -0.01 1.04 16 45 H 0.38 19.46 6.85 -92.71 -0.63 18.82 16 46 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -74.39 364.29 -0.85 -75.24 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -0.28 Total: 27.01 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 8.21 Total: 13.39 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -9.60 Total: -139.43 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.21 Total: -24.29 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -74.39 -0.85 -75.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.980 kcal (2) G-P(sol) polarization free energy of solvation -74.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds