Wall clock time and date at job start Tue Mar 31 2020 14:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.52530 * 2 1 4 4 C 1.53193 * 109.49895 * 120.07930 * 2 1 3 5 5 N 1.46926 * 108.77446 * 65.32104 * 4 2 1 6 6 C 1.34780 * 120.62872 * 233.63215 * 5 4 2 7 7 O 1.21727 * 120.00311 * 0.87748 * 6 5 4 8 8 C 1.46383 * 119.99723 * 180.87653 * 6 5 4 9 9 C 1.36722 * 126.82397 * 25.77497 * 8 6 5 10 10 N 1.33229 * 107.96019 * 179.86938 * 9 8 6 11 11 C 1.31539 * 109.75694 * 0.39894 * 10 9 8 12 12 O 1.35207 * 125.48680 * 179.71063 * 11 10 9 13 13 N 1.34945 * 109.02050 * 359.75597 * 11 10 9 14 14 C 1.46493 * 126.54348 * 179.97438 * 13 11 10 15 15 C 1.46923 * 118.74014 * 53.60441 * 5 4 2 16 16 C 1.53192 * 108.78034 * 306.39560 * 15 5 4 17 17 C 1.53040 * 109.50170 * 239.92166 * 2 1 3 18 18 H 1.08996 * 109.46100 * 181.39484 * 17 2 1 19 19 C 1.53002 * 109.46113 * 61.41837 * 17 2 1 20 20 N 1.46503 * 109.46970 * 174.97614 * 19 17 2 21 21 C 1.36938 * 119.99543 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00414 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99720 * 179.97438 * 21 20 19 24 24 N 1.31612 * 119.99789 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46815 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46756 * 120.00667 * 25 23 21 28 28 H 1.48496 * 109.46957 * 240.00678 * 25 23 21 29 29 H 1.09012 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47621 * 300.07651 * 1 2 3 31 31 H 1.09005 * 109.47354 * 60.08401 * 1 2 3 32 32 H 1.08996 * 109.58619 * 185.10704 * 4 2 1 33 33 H 1.08997 * 109.58449 * 305.39073 * 4 2 1 34 34 H 1.07996 * 126.01910 * 0.02562 * 9 8 6 35 35 H 0.96698 * 114.00758 * 270.04959 * 12 11 10 36 36 H 1.09001 * 109.47418 * 264.51141 * 14 13 11 37 37 H 1.09006 * 109.47299 * 24.51951 * 14 13 11 38 38 H 1.09009 * 109.46905 * 144.51061 * 14 13 11 39 39 H 1.09008 * 109.58170 * 66.18181 * 15 5 4 40 40 H 1.09003 * 109.58942 * 186.60272 * 15 5 4 41 41 H 1.08994 * 109.49480 * 294.68226 * 16 15 5 42 42 H 1.09001 * 109.49883 * 174.58498 * 16 15 5 43 43 H 1.09003 * 109.46904 * 294.97686 * 19 17 2 44 44 H 1.08993 * 109.46783 * 54.97287 * 19 17 2 45 45 H 0.96990 * 120.00187 * 359.97438 * 20 19 17 46 46 H 0.97006 * 119.99605 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9740 -2.7218 2.1779 7 8 0.6652 -2.0723 3.1600 8 6 0.6095 -4.1369 2.0920 9 6 1.2472 -5.1049 1.3670 10 7 0.6036 -6.2551 1.5617 11 6 -0.4171 -6.0623 2.3687 12 8 -1.2877 -7.0140 2.7743 13 7 -0.4559 -4.7616 2.7258 14 6 -1.4357 -4.1293 3.6126 15 6 2.0140 -2.9039 -0.0308 16 6 1.5031 -2.1558 -1.2661 17 6 2.0408 -0.7230 -1.2483 18 1 3.1305 -0.7443 -1.2352 19 6 1.5604 0.0169 -2.4984 20 7 2.1471 -0.6037 -3.6888 21 6 1.8579 -0.1080 -4.9322 22 1 1.1978 0.7405 -5.0353 23 6 2.4142 -0.6957 -6.0602 24 7 3.2190 -1.7294 -5.9345 25 14 2.0204 -0.0192 -7.7563 26 1 1.0983 1.1375 -7.6259 27 1 3.2753 0.4205 -8.4173 28 1 1.3749 -1.0777 -8.5737 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3634 0.5125 -0.8908 32 1 3.1274 -0.6462 1.2980 33 1 1.6026 -0.2714 2.1390 34 1 2.1204 -4.9627 0.7477 35 1 -2.0568 -7.1154 2.1970 36 1 -2.2311 -3.6829 3.0158 37 1 -1.8596 -4.8800 4.2797 38 1 -0.9453 -3.3547 4.2023 39 1 3.0981 -3.0041 -0.0867 40 1 1.5555 -3.8918 0.0137 41 1 0.4134 -2.1355 -1.2541 42 1 1.8482 -2.6628 -2.1671 43 1 0.4734 -0.0383 -2.5581 44 1 1.8687 1.0609 -2.4435 45 1 2.7402 -1.3655 -3.5963 46 1 3.6074 -2.1403 -6.7228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184935715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:05 Heat of formation + Delta-G solvation = 20.339734 kcal Electronic energy + Delta-G solvation = -28178.606786 eV Core-core repulsion = 24298.979851 eV Total energy + Delta-G solvation = -3879.626934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.62233 -40.27929 -38.14007 -37.61575 -35.21272 -34.35675 -33.49147 -31.91147 -30.36736 -29.77102 -27.52203 -27.02559 -26.62089 -24.13648 -23.23503 -22.78615 -21.93470 -21.25564 -20.01360 -18.96003 -18.40675 -17.38515 -17.13694 -16.89285 -16.31338 -15.84954 -15.44439 -15.02616 -14.67312 -14.45112 -14.24661 -14.10176 -13.88369 -13.64440 -13.45087 -13.15483 -13.02683 -12.87592 -12.60744 -12.47761 -12.27395 -12.05863 -11.62754 -11.37397 -11.04813 -10.94703 -10.79769 -10.60922 -10.35645 -10.24141 -10.18595 -10.11607 -9.98791 -9.83884 -9.65224 -8.88076 -8.83877 -8.57737 -6.91265 -5.77549 -3.05385 0.94976 1.80204 2.36701 2.86840 3.05101 3.42545 3.47435 3.48499 3.50471 4.20766 4.42077 4.57942 4.63186 4.81079 4.82317 4.91395 4.97019 4.98223 5.12020 5.20059 5.23070 5.45558 5.51360 5.58478 5.63527 5.68282 5.74724 5.81833 5.84114 6.02522 6.05057 6.06353 6.13160 6.17630 6.26895 6.34460 6.43737 6.45788 6.64368 6.79811 6.92606 7.14574 7.21991 7.47839 7.70192 7.93943 8.41921 9.53240 10.11495 10.46028 11.45433 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.003022 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.395818 B = 9264.250633 C =10234.490852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.120 3.880 5 N -0.586 5.586 6 C 0.596 3.404 7 O -0.551 6.551 8 C -0.071 4.071 9 C 0.042 3.958 10 N -0.484 5.484 11 C 0.394 3.606 12 O -0.440 6.440 13 N -0.429 5.429 14 C 0.063 3.937 15 C 0.073 3.927 16 C -0.126 4.126 17 C -0.090 4.090 18 H 0.073 0.927 19 C 0.158 3.842 20 N -0.732 5.732 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.201 0.799 35 H 0.405 0.595 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -4.945 19.681 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.002 4.002 5 N -0.318 5.318 6 C 0.383 3.617 7 O -0.431 6.431 8 C -0.188 4.188 9 C -0.111 4.111 10 N -0.212 5.212 11 C 0.094 3.906 12 O -0.241 6.241 13 N -0.123 5.123 14 C -0.079 4.079 15 C -0.049 4.049 16 C -0.164 4.164 17 C -0.109 4.109 18 H 0.091 0.909 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.217 0.783 35 H 0.262 0.738 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.706 -5.335 20.340 22.396 hybrid contribution -0.669 0.792 -1.039 1.467 sum -8.375 -4.543 19.301 21.525 Atomic orbital electron populations 1.21858 0.94984 1.01855 1.01481 1.21478 0.96612 0.99549 0.94140 0.89828 1.21746 0.99706 0.79309 0.99441 1.47743 1.54927 1.11737 1.17352 1.16593 0.78123 0.83989 0.82946 1.90784 1.56028 1.64726 1.31522 1.20573 0.96977 0.95326 1.05876 1.23067 1.01518 0.86757 0.99788 1.70373 1.07241 1.27324 1.16293 1.20256 0.94008 0.79216 0.97098 1.84805 1.35927 1.51009 1.52386 1.45629 1.22802 1.07954 1.35867 1.22286 0.91498 1.00118 0.93986 1.22761 1.01177 0.96774 0.84184 1.21961 1.01331 0.95962 0.97131 1.21327 1.00365 0.94718 0.94450 0.90871 1.20707 0.95871 0.94640 0.85682 1.42382 1.56783 1.37621 1.00838 1.19263 1.22956 1.10821 0.83847 0.91283 1.24718 1.00097 0.98400 0.97777 1.69656 1.35686 1.24409 1.28435 0.86144 0.77413 0.77996 0.84813 1.20628 1.21902 1.21892 0.92754 0.93365 0.91890 0.91051 0.88999 0.78283 0.73750 0.90141 0.88979 0.87608 0.90383 0.87561 0.91447 0.89164 0.96161 0.96520 0.78275 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.38 37.15 0.31 -1.48 16 2 C -0.10 -1.19 2.72 -90.50 -0.25 -1.43 16 3 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.35 5.82 -3.71 -0.02 1.33 16 5 N -0.59 -6.85 2.41 -174.42 -0.42 -7.27 16 6 C 0.60 7.70 7.57 -12.98 -0.10 7.60 16 7 O -0.55 -8.25 14.72 5.17 0.08 -8.18 16 8 C -0.07 -0.86 6.55 -81.97 -0.54 -1.40 16 9 C 0.04 0.49 9.58 -17.49 -0.17 0.32 16 10 N -0.48 -6.23 11.22 -14.62 -0.16 -6.40 16 11 C 0.39 4.38 9.01 -89.59 -0.81 3.58 16 12 O -0.44 -3.62 13.44 -17.32 -0.23 -3.85 16 13 N -0.43 -4.66 3.20 -122.12 -0.39 -5.05 16 14 C 0.06 0.50 10.82 59.84 0.65 1.15 16 15 C 0.07 0.80 5.39 -3.71 -0.02 0.78 16 16 C -0.13 -1.73 4.91 -26.61 -0.13 -1.86 16 17 C -0.09 -1.30 1.96 -90.57 -0.18 -1.48 16 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 19 C 0.16 3.00 5.19 -4.04 -0.02 2.98 16 20 N -0.73 -17.72 5.32 -59.90 -0.32 -18.04 16 21 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 25 Si 0.90 22.15 29.55 -169.99 -5.02 17.13 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H 0.05 0.71 5.97 -51.92 -0.31 0.40 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.08 7.01 -51.93 -0.36 0.72 16 34 H 0.20 1.88 5.75 -52.49 -0.30 1.58 16 35 H 0.40 1.22 9.06 45.56 0.41 1.63 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 38 H 0.11 0.99 6.64 -51.92 -0.34 0.64 16 39 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 40 H 0.11 1.09 3.41 -51.93 -0.18 0.92 16 41 H 0.07 0.97 6.33 -51.93 -0.33 0.64 16 42 H 0.09 1.44 7.15 -51.93 -0.37 1.07 16 43 H 0.02 0.40 6.74 -51.93 -0.35 0.05 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 9.63 6.85 -40.82 -0.28 9.35 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -34.46 360.27 -7.51 -41.98 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.68 Total: 8.17 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.51 Total: 2.93 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.57 Total: -63.61 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.16 Total: -12.03 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.46 -7.51 -41.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.316 kcal (2) G-P(sol) polarization free energy of solvation -34.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds