Wall clock time and date at job start Tue Mar 31 2020 14:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.52530 * 2 1 4 4 C 1.53193 * 109.49895 * 120.07930 * 2 1 3 5 5 N 1.46926 * 108.77446 * 65.32104 * 4 2 1 6 6 C 1.34780 * 120.62872 * 233.63215 * 5 4 2 7 7 O 1.21727 * 120.00311 * 0.87748 * 6 5 4 8 8 C 1.46383 * 119.99723 * 180.87653 * 6 5 4 9 9 C 1.36722 * 126.82397 * 25.77497 * 8 6 5 10 10 N 1.33229 * 107.96019 * 179.86938 * 9 8 6 11 11 C 1.31539 * 109.75694 * 0.39894 * 10 9 8 12 12 O 1.35207 * 125.48680 * 179.71063 * 11 10 9 13 13 N 1.34945 * 109.02050 * 359.75597 * 11 10 9 14 14 C 1.46493 * 126.54348 * 179.97438 * 13 11 10 15 15 C 1.46923 * 118.74014 * 53.60441 * 5 4 2 16 16 C 1.53192 * 108.78034 * 306.39560 * 15 5 4 17 17 C 1.53040 * 109.50170 * 239.92166 * 2 1 3 18 18 H 1.08996 * 109.46100 * 181.39484 * 17 2 1 19 19 C 1.53002 * 109.46113 * 61.41837 * 17 2 1 20 20 N 1.46503 * 109.46970 * 174.97614 * 19 17 2 21 21 C 1.36938 * 119.99543 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00414 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99720 * 179.97438 * 21 20 19 24 24 N 1.31612 * 119.99789 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99880 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46815 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46756 * 120.00667 * 25 23 21 28 28 H 1.48496 * 109.46957 * 240.00678 * 25 23 21 29 29 H 1.09012 * 109.47075 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47621 * 300.07651 * 1 2 3 31 31 H 1.09005 * 109.47354 * 60.08401 * 1 2 3 32 32 H 1.08996 * 109.58619 * 185.10704 * 4 2 1 33 33 H 1.08997 * 109.58449 * 305.39073 * 4 2 1 34 34 H 1.07996 * 126.01910 * 0.02562 * 9 8 6 35 35 H 0.96698 * 114.00758 * 270.04959 * 12 11 10 36 36 H 1.09001 * 109.47418 * 264.51141 * 14 13 11 37 37 H 1.09006 * 109.47299 * 24.51951 * 14 13 11 38 38 H 1.09009 * 109.46905 * 144.51061 * 14 13 11 39 39 H 1.09008 * 109.58170 * 66.18181 * 15 5 4 40 40 H 1.09003 * 109.58942 * 186.60272 * 15 5 4 41 41 H 1.08994 * 109.49480 * 294.68226 * 16 15 5 42 42 H 1.09001 * 109.49883 * 174.58498 * 16 15 5 43 43 H 1.09003 * 109.46904 * 294.97686 * 19 17 2 44 44 H 1.08993 * 109.46783 * 54.97287 * 19 17 2 45 45 H 0.96990 * 120.00187 * 359.97438 * 20 19 17 46 46 H 0.97006 * 119.99605 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1381 1.1696 6 6 0.9740 -2.7218 2.1779 7 8 0.6652 -2.0723 3.1600 8 6 0.6095 -4.1369 2.0920 9 6 1.2472 -5.1049 1.3670 10 7 0.6036 -6.2551 1.5617 11 6 -0.4171 -6.0623 2.3687 12 8 -1.2877 -7.0140 2.7743 13 7 -0.4559 -4.7616 2.7258 14 6 -1.4357 -4.1293 3.6126 15 6 2.0140 -2.9039 -0.0308 16 6 1.5031 -2.1558 -1.2661 17 6 2.0408 -0.7230 -1.2483 18 1 3.1305 -0.7443 -1.2352 19 6 1.5604 0.0169 -2.4984 20 7 2.1471 -0.6037 -3.6888 21 6 1.8579 -0.1080 -4.9322 22 1 1.1978 0.7405 -5.0353 23 6 2.4142 -0.6957 -6.0602 24 7 3.2190 -1.7294 -5.9345 25 14 2.0204 -0.0192 -7.7563 26 1 1.0983 1.1375 -7.6259 27 1 3.2753 0.4205 -8.4173 28 1 1.3749 -1.0777 -8.5737 29 1 -0.3634 -1.0278 0.0005 30 1 -0.3634 0.5150 0.8892 31 1 -0.3634 0.5125 -0.8908 32 1 3.1274 -0.6462 1.2980 33 1 1.6026 -0.2714 2.1390 34 1 2.1204 -4.9627 0.7477 35 1 -2.0568 -7.1154 2.1970 36 1 -2.2311 -3.6829 3.0158 37 1 -1.8596 -4.8800 4.2797 38 1 -0.9453 -3.3547 4.2023 39 1 3.0981 -3.0041 -0.0867 40 1 1.5555 -3.8918 0.0137 41 1 0.4134 -2.1355 -1.2541 42 1 1.8482 -2.6628 -2.1671 43 1 0.4734 -0.0383 -2.5581 44 1 1.8687 1.0609 -2.4435 45 1 2.7402 -1.3655 -3.5963 46 1 3.6074 -2.1403 -6.7228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184935715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:04 Heat of formation + Delta-G solvation = -5.840088 kcal Electronic energy + Delta-G solvation = -28179.742028 eV Core-core repulsion = 24298.979851 eV Total energy + Delta-G solvation = -3880.762177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.45875 -41.27980 -39.21197 -38.34645 -36.63349 -35.37742 -34.75250 -33.31655 -31.97134 -30.67909 -28.57081 -28.12400 -27.62268 -25.68979 -24.53756 -23.82557 -22.81353 -22.54502 -20.96790 -19.80754 -19.55066 -18.91303 -18.12403 -17.93075 -17.23029 -16.88190 -16.60649 -16.35835 -15.79851 -15.56775 -15.33239 -15.28509 -15.10689 -14.91454 -14.67588 -14.38642 -13.91982 -13.76490 -13.67731 -13.54614 -13.38423 -13.15334 -12.94896 -12.80169 -12.67057 -12.36207 -12.10469 -11.99816 -11.88756 -11.55849 -11.51574 -11.22857 -11.18510 -10.99754 -10.89559 -10.79740 -9.78812 -9.48274 -8.93023 -7.92006 -5.18992 0.09875 1.01499 1.49008 1.49341 1.52501 1.59023 1.96300 2.12633 2.58353 2.78431 3.31386 3.41831 3.74668 3.76227 3.76864 3.87013 3.88908 4.05572 4.21047 4.24928 4.26921 4.35231 4.45160 4.48912 4.58465 4.68450 4.73500 4.77441 4.83063 4.88126 4.94058 5.00532 5.10953 5.20498 5.21508 5.24128 5.26572 5.35677 5.50650 5.52918 5.56188 5.64065 6.25658 6.31417 6.52331 6.65293 6.97786 7.38237 8.15643 8.39300 9.31417 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.003022 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.395818 B = 9264.250633 C =10234.490852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.095 0.905 4 C 0.122 3.878 5 N -0.583 5.583 6 C 0.597 3.403 7 O -0.575 6.575 8 C -0.091 4.091 9 C 0.044 3.956 10 N -0.517 5.517 11 C 0.401 3.599 12 O -0.441 6.441 13 N -0.431 5.431 14 C 0.062 3.938 15 C 0.082 3.918 16 C -0.119 4.119 17 C -0.079 4.079 18 H 0.073 0.927 19 C 0.158 3.842 20 N -0.742 5.742 21 C -0.242 4.242 22 H 0.071 0.929 23 C -0.072 4.072 24 N -0.965 5.965 25 Si 0.967 3.033 26 H -0.269 1.269 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.216 0.784 35 H 0.428 0.572 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.017 0.983 44 H 0.015 0.985 45 H 0.376 0.624 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.474 -4.827 20.584 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.113 0.887 4 C 0.001 3.999 5 N -0.313 5.313 6 C 0.386 3.614 7 O -0.456 6.456 8 C -0.207 4.207 9 C -0.110 4.110 10 N -0.246 5.246 11 C 0.101 3.899 12 O -0.245 6.245 13 N -0.124 5.124 14 C -0.079 4.079 15 C -0.040 4.040 16 C -0.157 4.157 17 C -0.098 4.098 18 H 0.091 0.909 19 C 0.032 3.968 20 N -0.385 5.385 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.265 4.265 24 N -0.616 5.616 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.232 0.768 35 H 0.290 0.710 36 H 0.112 0.888 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.035 0.965 44 H 0.033 0.967 45 H 0.209 0.791 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.381 -5.190 21.260 23.434 hybrid contribution -0.564 0.741 -1.264 1.570 sum -8.945 -4.450 19.996 22.353 Atomic orbital electron populations 1.21800 0.95139 1.01268 1.01483 1.21418 0.96346 0.99986 0.93181 0.88666 1.21768 1.00659 0.78897 0.98607 1.47751 1.54516 1.11934 1.17143 1.16682 0.77746 0.84233 0.82722 1.90769 1.57040 1.65372 1.32449 1.20547 0.98034 0.95070 1.07041 1.23351 1.01708 0.86403 0.99530 1.70366 1.08379 1.28055 1.17765 1.20360 0.93909 0.79586 0.96081 1.84768 1.36578 1.50045 1.53110 1.45796 1.22854 1.07906 1.35878 1.22438 0.91035 1.00420 0.94024 1.22731 1.02161 0.96547 0.82555 1.21827 1.00752 0.95603 0.97534 1.21212 1.00250 0.94911 0.93464 0.90911 1.20845 0.95359 0.94728 0.85853 1.42565 1.56815 1.37570 1.01535 1.19621 1.22112 1.10421 0.85294 0.91146 1.25469 1.00691 0.99119 1.01222 1.69794 1.37057 1.25782 1.28989 0.85158 0.77088 0.77537 0.80499 1.19360 1.22106 1.22099 0.93632 0.92287 0.92894 0.89404 0.89067 0.76799 0.71007 0.88849 0.86677 0.89084 0.88665 0.86626 0.92257 0.91571 0.96471 0.96674 0.79089 0.94044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.38 71.98 0.60 -2.69 16 2 C -0.09 -2.03 2.72 -10.72 -0.03 -2.06 16 3 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.12 2.52 5.82 86.36 0.50 3.03 16 5 N -0.58 -12.73 2.41 -823.93 -1.99 -14.71 16 6 C 0.60 14.74 7.57 86.36 0.65 15.40 16 7 O -0.57 -16.67 14.72 -4.43 -0.07 -16.73 16 8 C -0.09 -2.09 6.55 39.80 0.26 -1.83 16 9 C 0.04 0.97 9.58 84.13 0.81 1.77 16 10 N -0.52 -12.74 11.22 -313.64 -3.52 -16.26 16 11 C 0.40 8.32 9.01 179.99 1.62 9.94 16 12 O -0.44 -6.33 13.44 -84.88 -1.14 -7.47 16 13 N -0.43 -8.78 3.20 -651.98 -2.09 -10.86 16 14 C 0.06 0.88 10.82 127.77 1.38 2.26 16 15 C 0.08 1.69 5.39 86.36 0.47 2.15 16 16 C -0.12 -3.22 4.91 30.67 0.15 -3.07 16 17 C -0.08 -2.24 1.96 -10.76 -0.02 -2.26 16 18 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 19 C 0.16 5.96 5.19 86.38 0.45 6.41 16 20 N -0.74 -36.15 5.32 -343.44 -1.83 -37.97 16 21 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16 22 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.97 -57.68 13.06 21.65 0.28 -57.40 16 25 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 H 0.04 1.15 5.97 -2.38 -0.01 1.14 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.34 6.58 -2.38 -0.02 1.33 16 32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.97 7.01 -2.39 -0.02 1.96 16 34 H 0.22 3.75 5.75 -2.91 -0.02 3.73 16 35 H 0.43 1.57 9.06 -74.06 -0.67 0.90 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.11 1.06 8.03 -2.38 -0.02 1.05 16 38 H 0.09 1.62 6.64 -2.38 -0.02 1.61 16 39 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 40 H 0.12 2.24 3.41 -2.39 -0.01 2.23 16 41 H 0.06 1.69 6.33 -2.39 -0.02 1.68 16 42 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 43 H 0.02 0.67 6.74 -2.39 -0.02 0.66 16 44 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.38 19.21 6.85 -92.72 -0.63 18.57 16 46 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -73.34 360.27 -0.44 -73.78 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.27 Total: 27.03 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 8.15 Total: 12.95 kcal Atomic # 7 Polarization: -128.07 SS G_CDS: -9.14 Total: -137.21 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -1.21 Total: -24.20 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.34 -0.44 -73.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.936 kcal (2) G-P(sol) polarization free energy of solvation -73.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds