Wall clock time and date at job start Tue Mar 31 2020 14:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49261 * 2 1 4 4 C 1.53191 * 109.50132 * 120.09809 * 2 1 3 5 5 N 1.46923 * 108.77751 * 174.58827 * 4 2 1 6 6 C 1.34772 * 120.63081 * 126.36630 * 5 4 2 7 7 O 1.21734 * 120.00167 * 351.32195 * 6 5 4 8 8 C 1.46380 * 120.00037 * 171.31411 * 6 5 4 9 9 C 1.36715 * 126.82810 * 332.17862 * 8 6 5 10 10 N 1.33222 * 107.96803 * 179.87052 * 9 8 6 11 11 C 1.31539 * 109.75607 * 0.40100 * 10 9 8 12 12 O 1.35207 * 125.48946 * 179.76919 * 11 10 9 13 13 N 1.34942 * 109.01937 * 359.75347 * 11 10 9 14 14 C 1.46498 * 126.54734 * 179.97438 * 13 11 10 15 15 C 1.46927 * 118.74054 * 306.39598 * 5 4 2 16 16 C 1.53197 * 108.77446 * 53.60335 * 15 5 4 17 17 C 1.53036 * 109.31702 * 305.36771 * 16 15 5 18 18 H 1.09000 * 109.45657 * 301.34583 * 17 16 15 19 19 C 1.52997 * 109.46326 * 181.38649 * 17 16 15 20 20 N 1.46494 * 109.47143 * 64.99755 * 19 17 16 21 21 C 1.36944 * 120.00308 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99166 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00353 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00139 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99939 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47390 * 90.00342 * 25 23 21 27 27 H 1.48507 * 109.47242 * 210.00594 * 25 23 21 28 28 H 1.48502 * 109.47354 * 330.00233 * 25 23 21 29 29 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47189 * 300.06050 * 1 2 3 31 31 H 1.08996 * 109.47372 * 60.06264 * 1 2 3 32 32 H 1.08997 * 109.58355 * 294.37906 * 4 2 1 33 33 H 1.08996 * 109.58364 * 54.66244 * 4 2 1 34 34 H 1.08011 * 126.01735 * 359.97438 * 9 8 6 35 35 H 0.96704 * 113.99910 * 269.97625 * 12 11 10 36 36 H 1.08994 * 109.46966 * 264.55267 * 14 13 11 37 37 H 1.09002 * 109.46758 * 24.55354 * 14 13 11 38 38 H 1.09008 * 109.46819 * 144.55269 * 14 13 11 39 39 H 1.09002 * 109.58453 * 293.81856 * 15 5 4 40 40 H 1.08994 * 109.58968 * 173.39187 * 15 5 4 41 41 H 1.08999 * 109.49786 * 65.32098 * 16 15 5 42 42 H 1.09002 * 109.49534 * 185.38194 * 16 15 5 43 43 H 1.08997 * 109.47115 * 185.00426 * 19 17 16 44 44 H 1.08997 * 109.46661 * 305.00057 * 19 17 16 45 45 H 0.97005 * 120.00048 * 0.02562 * 20 19 17 46 46 H 0.96997 * 120.00140 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7242 1.2493 5 7 3.5047 -0.8294 1.1693 6 6 4.2812 -0.3861 2.1777 7 8 3.7878 0.2474 3.0926 8 6 5.7179 -0.6665 2.1728 9 6 6.3428 -1.7323 1.5875 10 7 7.6510 -1.6147 1.8102 11 6 7.8861 -0.5299 2.5160 12 8 9.1039 -0.1077 2.9243 13 7 6.7160 0.0938 2.7667 14 6 6.5338 1.3358 3.5219 15 6 4.1054 -1.4265 -0.0313 16 6 3.5708 -0.6944 -1.2663 17 6 2.0408 -0.7225 -1.2487 18 1 1.6968 -1.7568 -1.2360 19 6 1.5036 -0.0223 -2.4984 20 7 1.8917 -0.7826 -3.6890 21 6 1.5208 -0.3444 -4.9323 22 1 0.9426 0.5620 -5.0350 23 6 1.8881 -1.0651 -6.0604 24 7 1.5320 -0.6436 -7.2553 25 14 2.8888 -2.6323 -5.8826 26 1 1.9719 -3.7922 -5.7447 27 1 3.7406 -2.8149 -7.0853 28 1 3.7497 -2.5358 -4.6764 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.7638 -0.1586 2.1388 33 1 1.6035 -1.7210 1.2987 34 1 5.8609 -2.5287 1.0395 35 1 9.3697 -0.4505 3.7887 36 1 6.2895 1.0989 4.5574 37 1 7.4543 1.9188 3.4899 38 1 5.7220 1.9139 3.0801 39 1 3.8377 -2.4816 -0.0876 40 1 5.1896 -1.3243 0.0132 41 1 3.9158 0.3395 -1.2540 42 1 3.9339 -1.1884 -2.1675 43 1 0.4167 0.0364 -2.4431 44 1 1.9193 0.9835 -2.5582 45 1 2.4114 -1.5965 -3.5967 46 1 1.7890 -1.1470 -8.0436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184935717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:08 Heat of formation + Delta-G solvation = 13.260143 kcal Electronic energy + Delta-G solvation = -27997.153709 eV Core-core repulsion = 24117.219780 eV Total energy + Delta-G solvation = -3879.933929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.67497 -40.25117 -38.19595 -37.68397 -35.36920 -34.44922 -33.73634 -32.11208 -30.74060 -29.98362 -27.58662 -27.24907 -26.56779 -24.22980 -22.87361 -22.40733 -22.00401 -21.17439 -20.13164 -19.41394 -18.92640 -17.69399 -17.35370 -16.88899 -16.57891 -15.70606 -15.54190 -14.87490 -14.75839 -14.57180 -14.41730 -14.20200 -14.01351 -13.46340 -13.39345 -13.19167 -13.13441 -12.95576 -12.83708 -12.53295 -12.39594 -12.04348 -11.93858 -11.73318 -11.34776 -11.01563 -10.89791 -10.72248 -10.53366 -10.38993 -10.17667 -10.17163 -10.12406 -9.99654 -9.58005 -8.93059 -8.88402 -8.66991 -7.21760 -5.76675 -3.11986 0.86234 1.77929 2.23122 2.78872 2.93406 3.36078 3.38559 3.39939 3.45308 4.11176 4.34338 4.58758 4.59765 4.68657 4.75548 4.76711 4.85058 4.92101 4.98794 5.10218 5.17529 5.30896 5.35948 5.52867 5.54207 5.57120 5.64540 5.69622 5.74731 5.78738 5.87365 5.98152 6.02811 6.11278 6.15574 6.19270 6.32188 6.36458 6.42332 6.72193 6.80204 7.07285 7.11172 7.39961 7.83622 7.99960 8.42459 9.21764 9.94009 10.13857 11.41959 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.003328 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.689490 B = 8411.030690 C = 9732.543318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.120 3.880 5 N -0.592 5.592 6 C 0.596 3.404 7 O -0.546 6.546 8 C -0.073 4.073 9 C 0.049 3.951 10 N -0.485 5.485 11 C 0.395 3.605 12 O -0.439 6.439 13 N -0.430 5.430 14 C 0.072 3.928 15 C 0.087 3.913 16 C -0.127 4.127 17 C -0.094 4.094 18 H 0.073 0.927 19 C 0.161 3.839 20 N -0.755 5.755 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.192 0.808 35 H 0.405 0.595 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.033 0.967 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 -0.194 25.648 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.001 4.001 5 N -0.324 5.324 6 C 0.384 3.616 7 O -0.425 6.425 8 C -0.189 4.189 9 C -0.105 4.105 10 N -0.213 5.213 11 C 0.095 3.905 12 O -0.240 6.240 13 N -0.123 5.123 14 C -0.070 4.070 15 C -0.035 4.035 16 C -0.166 4.166 17 C -0.113 4.113 18 H 0.092 0.908 19 C 0.034 3.966 20 N -0.401 5.401 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.583 5.583 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.209 0.791 35 H 0.262 0.738 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.340 0.261 25.294 26.965 hybrid contribution 0.327 -0.719 0.604 0.994 sum 9.666 -0.458 25.898 27.647 Atomic orbital electron populations 1.21839 0.94081 1.02303 1.02324 1.21446 0.96309 1.00027 0.93804 0.90674 1.21777 0.77558 1.01230 0.99560 1.47782 1.07071 1.60337 1.17229 1.16627 0.83691 0.79038 0.82278 1.90815 1.74986 1.40324 1.36382 1.20607 0.90274 0.98159 1.09885 1.22793 0.88650 0.98471 1.00589 1.70350 1.17176 1.15775 1.18002 1.20226 0.80352 0.90128 0.99751 1.84820 1.25897 1.71701 1.41576 1.45648 1.06083 1.20952 1.39621 1.22174 1.04543 0.83515 0.96795 1.22413 0.99397 0.97616 0.84067 1.21960 0.96094 1.01493 0.97005 1.21416 0.94660 1.00323 0.94907 0.90837 1.20730 0.97231 0.94094 0.84567 1.42726 1.66163 1.28605 1.02605 1.19058 1.28411 1.07870 0.81946 0.89328 1.24677 1.00718 0.98748 0.95108 1.69700 1.50997 1.40581 0.97062 0.86549 0.80403 0.84649 0.76896 1.21099 1.21758 1.20296 0.92418 0.92853 0.91096 0.88937 0.90989 0.79141 0.73796 0.89678 0.88956 0.88775 0.90554 0.88504 0.91402 0.89635 0.94914 0.95788 0.80723 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.82 37.16 0.33 -1.27 16 2 C -0.10 -1.12 2.41 -90.50 -0.22 -1.34 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.29 5.73 -3.71 -0.02 1.27 16 5 N -0.59 -6.66 2.97 -174.42 -0.52 -7.18 16 6 C 0.60 7.42 7.48 -12.99 -0.10 7.33 16 7 O -0.55 -7.96 15.34 5.16 0.08 -7.88 16 8 C -0.07 -0.84 6.35 -81.97 -0.52 -1.36 16 9 C 0.05 0.54 9.46 -17.50 -0.17 0.37 16 10 N -0.48 -5.93 11.22 -14.62 -0.16 -6.09 16 11 C 0.39 4.18 9.00 -89.59 -0.81 3.37 16 12 O -0.44 -3.39 13.44 -17.32 -0.23 -3.62 16 13 N -0.43 -4.44 3.20 -122.12 -0.39 -4.83 16 14 C 0.07 0.53 10.42 59.85 0.62 1.16 16 15 C 0.09 0.92 5.12 -3.71 -0.02 0.90 16 16 C -0.13 -1.69 5.25 -26.61 -0.14 -1.83 16 17 C -0.09 -1.30 1.73 -90.58 -0.16 -1.46 16 18 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 19 C 0.16 2.94 5.41 -4.05 -0.02 2.92 16 20 N -0.76 -17.31 5.12 -59.92 -0.31 -17.62 16 21 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 22 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 23 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 24 N -0.94 -29.35 13.97 55.49 0.78 -28.58 16 25 Si 0.88 21.77 27.73 -169.99 -4.71 17.05 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.85 6.29 -51.93 -0.33 0.53 16 32 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.19 1.64 6.39 -52.48 -0.34 1.31 16 35 H 0.40 0.90 9.06 45.56 0.41 1.32 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.49 8.03 -51.93 -0.42 0.07 16 38 H 0.09 0.81 7.62 -51.92 -0.40 0.41 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.98 4.36 -51.93 -0.23 0.75 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.09 1.27 7.15 -51.93 -0.37 0.90 16 43 H 0.03 0.61 6.14 -51.93 -0.32 0.29 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.36 7.95 4.71 -40.82 -0.19 7.76 16 46 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 363.29 15.07 5.47 5.47 Total: -1.00 -35.88 363.29 -7.40 -43.28 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.93 Total: 6.91 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.47 Total: 3.10 kcal Atomic # 7 Polarization: -63.70 SS G_CDS: -0.61 Total: -64.30 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.15 Total: -11.50 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.88 -7.40 -43.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.538 kcal (2) G-P(sol) polarization free energy of solvation -35.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds