Wall clock time and date at job start Tue Mar 31 2020 14:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49261 * 2 1 4 4 C 1.53191 * 109.50132 * 120.09809 * 2 1 3 5 5 N 1.46923 * 108.77751 * 174.58827 * 4 2 1 6 6 C 1.34772 * 120.63081 * 126.36630 * 5 4 2 7 7 O 1.21734 * 120.00167 * 351.32195 * 6 5 4 8 8 C 1.46380 * 120.00037 * 171.31411 * 6 5 4 9 9 C 1.36715 * 126.82810 * 332.17862 * 8 6 5 10 10 N 1.33222 * 107.96803 * 179.87052 * 9 8 6 11 11 C 1.31539 * 109.75607 * 0.40100 * 10 9 8 12 12 O 1.35207 * 125.48946 * 179.76919 * 11 10 9 13 13 N 1.34942 * 109.01937 * 359.75347 * 11 10 9 14 14 C 1.46498 * 126.54734 * 179.97438 * 13 11 10 15 15 C 1.46927 * 118.74054 * 306.39598 * 5 4 2 16 16 C 1.53197 * 108.77446 * 53.60335 * 15 5 4 17 17 C 1.53036 * 109.31702 * 305.36771 * 16 15 5 18 18 H 1.09000 * 109.45657 * 301.34583 * 17 16 15 19 19 C 1.52997 * 109.46326 * 181.38649 * 17 16 15 20 20 N 1.46494 * 109.47143 * 64.99755 * 19 17 16 21 21 C 1.36944 * 120.00308 * 180.02562 * 20 19 17 22 22 H 1.08003 * 119.99166 * 0.02562 * 21 20 19 23 23 C 1.38807 * 120.00353 * 180.02562 * 21 20 19 24 24 N 1.31617 * 120.00139 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99939 * 359.97438 * 23 21 20 26 26 H 1.48495 * 109.47390 * 90.00342 * 25 23 21 27 27 H 1.48507 * 109.47242 * 210.00594 * 25 23 21 28 28 H 1.48502 * 109.47354 * 330.00233 * 25 23 21 29 29 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47189 * 300.06050 * 1 2 3 31 31 H 1.08996 * 109.47372 * 60.06264 * 1 2 3 32 32 H 1.08997 * 109.58355 * 294.37906 * 4 2 1 33 33 H 1.08996 * 109.58364 * 54.66244 * 4 2 1 34 34 H 1.08011 * 126.01735 * 359.97438 * 9 8 6 35 35 H 0.96704 * 113.99910 * 269.97625 * 12 11 10 36 36 H 1.08994 * 109.46966 * 264.55267 * 14 13 11 37 37 H 1.09002 * 109.46758 * 24.55354 * 14 13 11 38 38 H 1.09008 * 109.46819 * 144.55269 * 14 13 11 39 39 H 1.09002 * 109.58453 * 293.81856 * 15 5 4 40 40 H 1.08994 * 109.58968 * 173.39187 * 15 5 4 41 41 H 1.08999 * 109.49786 * 65.32098 * 16 15 5 42 42 H 1.09002 * 109.49534 * 185.38194 * 16 15 5 43 43 H 1.08997 * 109.47115 * 185.00426 * 19 17 16 44 44 H 1.08997 * 109.46661 * 305.00057 * 19 17 16 45 45 H 0.97005 * 120.00048 * 0.02562 * 20 19 17 46 46 H 0.96997 * 120.00140 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0414 -0.7242 1.2493 5 7 3.5047 -0.8294 1.1693 6 6 4.2812 -0.3861 2.1777 7 8 3.7878 0.2474 3.0926 8 6 5.7179 -0.6665 2.1728 9 6 6.3428 -1.7323 1.5875 10 7 7.6510 -1.6147 1.8102 11 6 7.8861 -0.5299 2.5160 12 8 9.1039 -0.1077 2.9243 13 7 6.7160 0.0938 2.7667 14 6 6.5338 1.3358 3.5219 15 6 4.1054 -1.4265 -0.0313 16 6 3.5708 -0.6944 -1.2663 17 6 2.0408 -0.7225 -1.2487 18 1 1.6968 -1.7568 -1.2360 19 6 1.5036 -0.0223 -2.4984 20 7 1.8917 -0.7826 -3.6890 21 6 1.5208 -0.3444 -4.9323 22 1 0.9426 0.5620 -5.0350 23 6 1.8881 -1.0651 -6.0604 24 7 1.5320 -0.6436 -7.2553 25 14 2.8888 -2.6323 -5.8826 26 1 1.9719 -3.7922 -5.7447 27 1 3.7406 -2.8149 -7.0853 28 1 3.7497 -2.5358 -4.6764 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5147 0.8894 31 1 -0.3634 0.5128 -0.8905 32 1 1.7638 -0.1586 2.1388 33 1 1.6035 -1.7210 1.2987 34 1 5.8609 -2.5287 1.0395 35 1 9.3697 -0.4505 3.7887 36 1 6.2895 1.0989 4.5574 37 1 7.4543 1.9188 3.4899 38 1 5.7220 1.9139 3.0801 39 1 3.8377 -2.4816 -0.0876 40 1 5.1896 -1.3243 0.0132 41 1 3.9158 0.3395 -1.2540 42 1 3.9339 -1.1884 -2.1675 43 1 0.4167 0.0364 -2.4431 44 1 1.9193 0.9835 -2.5582 45 1 2.4114 -1.5965 -3.5967 46 1 1.7890 -1.1470 -8.0436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184935717.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:07 Heat of formation + Delta-G solvation = -15.297042 kcal Electronic energy + Delta-G solvation = -27998.392041 eV Core-core repulsion = 24117.219780 eV Total energy + Delta-G solvation = -3881.172261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.44285 -41.18590 -39.22970 -38.35527 -36.76239 -35.40878 -34.89639 -33.62856 -32.35589 -30.82732 -28.69951 -28.18911 -27.42832 -25.59433 -24.27967 -23.27196 -22.84071 -22.52893 -21.18408 -20.33750 -19.64541 -19.55399 -18.25378 -17.69962 -17.44127 -16.71587 -16.45410 -16.37528 -15.96128 -15.62810 -15.47377 -15.27161 -15.01300 -14.79957 -14.55665 -14.43546 -14.02606 -13.95454 -13.69325 -13.67374 -13.26552 -13.18415 -13.09600 -12.89512 -12.79473 -12.64892 -12.15149 -11.96753 -11.83444 -11.65104 -11.60809 -11.35932 -11.22097 -11.01032 -10.94093 -10.86427 -9.80551 -9.50379 -9.24957 -8.00593 -5.33951 0.07976 1.05021 1.40083 1.45134 1.45353 1.52420 1.95662 2.08062 2.51527 2.77476 3.28949 3.30993 3.55301 3.71492 3.75271 3.83163 3.87614 3.97373 4.07442 4.20516 4.25679 4.29995 4.39866 4.50505 4.54804 4.62381 4.68941 4.74693 4.80115 4.82590 4.88913 5.00055 5.09238 5.11510 5.20725 5.25301 5.28183 5.37190 5.48372 5.51594 5.59586 5.78117 6.21474 6.23443 6.51556 6.64708 6.93833 7.11097 7.86968 8.07665 9.21318 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014659 B = 0.003328 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.689490 B = 8411.030690 C = 9732.543318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.087 4.087 3 H 0.061 0.939 4 C 0.124 3.876 5 N -0.590 5.590 6 C 0.597 3.403 7 O -0.573 6.573 8 C -0.094 4.094 9 C 0.054 3.946 10 N -0.516 5.516 11 C 0.401 3.599 12 O -0.441 6.441 13 N -0.433 5.433 14 C 0.070 3.930 15 C 0.095 3.905 16 C -0.126 4.126 17 C -0.083 4.083 18 H 0.086 0.914 19 C 0.158 3.842 20 N -0.754 5.754 21 C -0.235 4.235 22 H 0.050 0.950 23 C -0.067 4.067 24 N -0.988 5.988 25 Si 0.957 3.043 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.243 1.243 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.211 0.789 35 H 0.429 0.571 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.032 0.968 44 H 0.010 0.990 45 H 0.368 0.632 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.305 -2.094 28.032 29.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.079 0.921 4 C 0.003 3.997 5 N -0.321 5.321 6 C 0.385 3.615 7 O -0.454 6.454 8 C -0.210 4.210 9 C -0.100 4.100 10 N -0.245 5.245 11 C 0.101 3.899 12 O -0.246 6.246 13 N -0.126 5.126 14 C -0.071 4.071 15 C -0.027 4.027 16 C -0.164 4.164 17 C -0.102 4.102 18 H 0.104 0.896 19 C 0.032 3.968 20 N -0.400 5.400 21 C -0.366 4.366 22 H 0.069 0.931 23 C -0.259 4.259 24 N -0.639 5.639 25 Si 0.783 3.217 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.167 1.167 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.228 0.772 35 H 0.290 0.710 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.050 0.950 44 H 0.028 0.972 45 H 0.202 0.798 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.665 -1.630 27.756 29.779 hybrid contribution -0.093 0.028 -0.106 0.144 sum 10.572 -1.603 27.650 29.645 Atomic orbital electron populations 1.21809 0.93286 1.02975 1.02226 1.21343 0.96906 0.99141 0.93338 0.92079 1.21782 0.77364 1.02155 0.98407 1.47815 1.07229 1.59958 1.17116 1.16753 0.84100 0.78522 0.82091 1.90797 1.75517 1.41627 1.37488 1.20575 0.90074 0.99092 1.11282 1.23138 0.88330 0.98551 0.99958 1.70357 1.17850 1.17011 1.19311 1.20343 0.81026 0.89571 0.98923 1.84778 1.24573 1.71815 1.43418 1.45813 1.05821 1.21463 1.39538 1.22318 1.05207 0.82713 0.96846 1.22430 0.99612 0.98450 0.82223 1.21901 0.95501 1.00972 0.98017 1.21321 0.95093 1.00524 0.93290 0.89554 1.20880 0.97255 0.93530 0.85097 1.42682 1.66080 1.29181 1.02084 1.19024 1.26968 1.06332 0.84255 0.93147 1.25573 1.02724 1.03023 0.94531 1.69901 1.53193 1.42640 0.98119 0.85388 0.78942 0.79599 0.77772 1.20159 1.22621 1.16664 0.91343 0.91292 0.92880 0.89325 0.88787 0.77208 0.70951 0.88612 0.86761 0.90165 0.87823 0.87882 0.92900 0.90851 0.95007 0.97236 0.79816 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.82 71.98 0.63 -2.25 16 2 C -0.09 -1.89 2.41 -10.72 -0.03 -1.92 16 3 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 4 C 0.12 2.35 5.73 86.36 0.49 2.84 16 5 N -0.59 -11.88 2.97 -823.95 -2.45 -14.32 16 6 C 0.60 13.90 7.48 86.36 0.65 14.55 16 7 O -0.57 -16.10 15.34 -4.46 -0.07 -16.17 16 8 C -0.09 -2.01 6.35 39.80 0.25 -1.76 16 9 C 0.05 1.07 9.46 84.13 0.80 1.86 16 10 N -0.52 -11.63 11.22 -313.64 -3.52 -15.15 16 11 C 0.40 7.71 9.00 179.99 1.62 9.33 16 12 O -0.44 -5.78 13.44 -84.88 -1.14 -6.92 16 13 N -0.43 -8.25 3.20 -651.99 -2.09 -10.34 16 14 C 0.07 0.95 10.42 127.77 1.33 2.28 16 15 C 0.09 1.71 5.12 86.36 0.44 2.15 16 16 C -0.13 -3.09 5.25 30.67 0.16 -2.93 16 17 C -0.08 -2.15 1.73 -10.77 -0.02 -2.17 16 18 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 19 C 0.16 5.74 5.41 86.38 0.47 6.21 16 20 N -0.75 -34.04 5.12 -343.47 -1.76 -35.80 16 21 C -0.23 -13.39 10.47 84.03 0.88 -12.51 16 22 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 23 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 24 N -0.99 -63.71 13.97 21.65 0.30 -63.41 16 25 Si 0.96 44.39 27.73 68.60 1.90 46.29 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.24 -9.77 6.52 99.48 0.65 -9.13 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.24 6.29 -2.39 -0.02 1.23 16 32 H 0.09 1.82 7.00 -2.39 -0.02 1.80 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.21 2.97 6.39 -2.90 -0.02 2.95 16 35 H 0.43 0.79 9.06 -74.05 -0.67 0.12 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 0.98 8.03 -2.39 -0.02 0.96 16 38 H 0.08 1.32 7.62 -2.38 -0.02 1.31 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.10 1.80 4.36 -2.39 -0.01 1.79 16 41 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 42 H 0.07 2.00 7.15 -2.39 -0.02 1.99 16 43 H 0.03 1.18 6.14 -2.39 -0.01 1.17 16 44 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.37 15.40 4.71 -92.70 -0.44 14.96 16 46 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -79.20 363.29 -0.82 -80.02 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: -0.14 Total: 23.59 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 8.15 Total: 12.20 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -9.51 Total: -139.02 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -1.21 Total: -23.09 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.90 Total: 46.29 kcal Total: -79.20 -0.82 -80.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184935717.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.723 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds