Wall clock time and date at job start Tue Mar 31 2020 14:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.50087 * 2 1 4 4 C 1.53624 * 109.66146 * 239.92351 * 2 1 3 5 5 N 1.46927 * 108.54038 * 294.84760 * 4 2 1 6 6 C 1.34782 * 120.63242 * 126.36588 * 5 4 2 7 7 O 1.21633 * 119.99757 * 6.14844 * 6 5 4 8 8 C 1.47249 * 119.99942 * 186.14467 * 6 5 4 9 9 C 1.36249 * 126.16414 * 186.61402 * 8 6 5 10 10 N 1.36339 * 106.88922 * 179.97438 * 9 8 6 11 11 C 1.46497 * 126.19823 * 180.02562 * 10 9 8 12 12 C 1.36170 * 107.59876 * 0.02562 * 10 9 8 13 13 O 1.35461 * 125.54615 * 179.73053 * 12 10 9 14 14 N 1.30696 * 108.89929 * 0.02562 * 12 10 9 15 15 C 1.46931 * 118.73987 * 306.09254 * 5 4 2 16 16 C 1.53194 * 108.77175 * 53.86040 * 15 5 4 17 17 C 1.53035 * 109.31381 * 305.36612 * 16 15 5 18 18 H 1.09003 * 109.46226 * 301.35908 * 17 16 15 19 19 C 1.53000 * 109.46174 * 181.38967 * 17 16 15 20 20 N 1.46492 * 109.47305 * 64.99922 * 19 17 16 21 21 C 1.36944 * 120.00327 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99663 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00361 * 179.97438 * 21 20 19 24 24 N 1.31616 * 119.99636 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00151 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46873 * 89.99993 * 25 23 21 27 27 H 1.48497 * 109.47467 * 210.00258 * 25 23 21 28 28 H 1.48499 * 109.47228 * 330.00237 * 25 23 21 29 29 H 1.08999 * 109.47026 * 299.93245 * 1 2 3 30 30 H 1.08997 * 109.47301 * 59.92959 * 1 2 3 31 31 H 1.09000 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.74192 * 175.11295 * 4 2 1 33 33 H 1.08996 * 109.66794 * 54.53541 * 4 2 1 34 34 H 1.08000 * 126.55461 * 359.97438 * 9 8 6 35 35 H 1.08998 * 109.47416 * 269.98291 * 11 10 9 36 36 H 1.09000 * 109.47092 * 29.98582 * 11 10 9 37 37 H 1.09003 * 109.46993 * 149.98268 * 11 10 9 38 38 H 0.96695 * 113.99557 * 90.01059 * 13 12 10 39 39 H 1.08997 * 109.58493 * 173.64590 * 15 5 4 40 40 H 1.08995 * 109.58413 * 294.07634 * 15 5 4 41 41 H 1.08997 * 109.50178 * 65.31649 * 16 15 5 42 42 H 1.08998 * 109.49866 * 185.38278 * 16 15 5 43 43 H 1.09003 * 109.47354 * 185.00235 * 19 17 16 44 44 H 1.09002 * 109.46970 * 304.99855 * 19 17 16 45 45 H 0.97002 * 120.00453 * 0.02562 * 20 19 17 46 46 H 0.97003 * 119.99927 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0469 -0.7250 -1.2519 5 7 1.6528 -2.1381 -1.1695 6 6 0.9765 -2.7223 -2.1784 7 8 0.7842 -2.1142 -3.2141 8 6 0.4706 -4.0968 -2.0268 9 6 -0.1132 -4.8506 -3.0001 10 7 -0.4290 -6.0508 -2.4357 11 6 -1.0752 -7.1802 -3.1088 12 6 -0.0349 -6.0095 -1.1329 13 8 -0.1807 -7.0123 -0.2339 14 7 0.5011 -4.8426 -0.8896 15 6 2.0154 -2.9038 0.0309 16 6 1.5037 -2.1557 1.2660 17 6 2.0408 -0.7228 1.2484 18 1 3.1306 -0.7436 1.2354 19 6 1.5601 0.0171 2.4984 20 7 2.1474 -0.6025 3.6888 21 6 1.8582 -0.1068 4.9322 22 1 1.1975 0.7413 5.0351 23 6 2.4143 -0.6942 6.0602 24 7 3.2200 -1.7274 5.9348 25 14 2.0193 -0.0184 7.7563 26 1 0.8181 -0.7053 8.2953 27 1 3.1718 -0.2520 8.6631 28 1 1.7538 1.4394 7.6588 29 1 -0.3633 0.5128 0.8906 30 1 -0.3634 0.5149 -0.8893 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1333 -0.6508 -1.2981 33 1 1.6095 -0.2752 -2.1432 34 1 -0.2917 -4.5541 -4.0232 35 1 -2.1570 -7.0924 -3.0084 36 1 -0.8068 -7.1754 -4.1652 37 1 -0.7426 -8.1131 -2.6536 38 1 0.5679 -7.6236 -0.2019 39 1 1.5572 -3.8918 -0.0137 40 1 3.0993 -3.0035 0.0871 41 1 0.4140 -2.1359 1.2538 42 1 1.8483 -2.6629 2.1672 43 1 1.8674 1.0614 2.4432 44 1 0.4732 -0.0390 2.5583 45 1 2.7412 -1.3640 3.5965 46 1 3.6084 -2.1381 6.7231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185086719.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:10 Heat of formation + Delta-G solvation = -11.431889 kcal Electronic energy + Delta-G solvation = -28040.627832 eV Core-core repulsion = 24159.623176 eV Total energy + Delta-G solvation = -3881.004655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.29365 -41.16105 -39.15505 -38.22488 -36.53461 -35.44617 -34.52574 -33.12027 -31.89315 -30.29562 -28.68615 -28.44219 -27.36747 -25.58076 -24.25926 -23.90620 -22.64956 -22.43314 -21.01755 -19.73545 -19.33327 -18.94900 -18.25635 -17.61630 -16.82187 -16.67085 -16.57531 -16.33925 -15.88180 -15.48110 -15.38347 -15.27098 -15.19556 -14.83093 -14.69433 -14.33350 -13.99572 -13.68995 -13.63872 -13.47746 -13.34943 -12.96848 -12.91916 -12.80729 -12.64162 -12.46084 -12.18277 -12.00134 -11.89244 -11.65507 -11.47131 -11.30138 -11.20096 -10.90083 -10.86589 -10.23980 -9.74398 -9.40517 -8.95268 -7.92561 -5.20670 0.48359 1.03716 1.39710 1.47154 1.49340 1.57648 2.05024 2.41131 2.57543 2.76471 3.40317 3.56855 3.69289 3.78015 3.84815 3.90064 4.05339 4.19589 4.29402 4.37040 4.37450 4.41092 4.51589 4.56527 4.68738 4.71715 4.74923 4.82514 4.83891 4.89013 4.97047 5.02230 5.07517 5.22239 5.22494 5.26839 5.34406 5.49557 5.53188 5.59068 5.63200 5.85296 6.30010 6.39839 6.64266 6.67012 7.18632 7.36023 8.13063 8.37430 9.31082 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014948 B = 0.003190 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.767846 B = 8774.768229 C =10196.365086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.095 0.905 4 C 0.118 3.882 5 N -0.590 5.590 6 C 0.600 3.400 7 O -0.576 6.576 8 C -0.080 4.080 9 C 0.064 3.936 10 N -0.453 5.453 11 C 0.061 3.939 12 C 0.381 3.619 13 O -0.444 6.444 14 N -0.484 5.484 15 C 0.074 3.926 16 C -0.107 4.107 17 C -0.080 4.080 18 H 0.065 0.935 19 C 0.160 3.840 20 N -0.743 5.743 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.287 1.287 27 H -0.293 1.293 28 H -0.271 1.271 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.425 0.575 39 H 0.154 0.846 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.375 0.625 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 -12.858 -23.929 28.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 H 0.113 0.887 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.389 3.611 7 O -0.457 6.457 8 C -0.207 4.207 9 C -0.075 4.075 10 N -0.147 5.147 11 C -0.079 4.079 12 C 0.079 3.921 13 O -0.248 6.248 14 N -0.215 5.215 15 C -0.048 4.048 16 C -0.146 4.146 17 C -0.099 4.099 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.385 5.385 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.267 4.267 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.215 1.215 27 H -0.220 1.220 28 H -0.196 1.196 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.237 0.763 35 H 0.108 0.892 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.286 0.714 39 H 0.170 0.830 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.034 0.966 45 H 0.207 0.793 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.574 -12.129 -23.443 27.460 hybrid contribution 0.315 -0.482 0.830 1.011 sum -7.259 -12.611 -22.613 26.890 Atomic orbital electron populations 1.21779 0.95046 1.01140 1.01575 1.21486 0.96396 0.99805 0.93193 0.88663 1.21821 1.00100 0.80044 0.98456 1.47912 1.54282 1.11621 1.18128 1.17139 0.77028 0.84244 0.82671 1.90734 1.61090 1.65203 1.28700 1.20311 1.12381 0.96575 0.91462 1.22966 0.99488 0.84535 1.00523 1.46053 1.45114 1.14357 1.09141 1.22531 0.99085 0.86327 0.99928 1.20607 1.00413 0.89962 0.81085 1.84900 1.47665 1.38391 1.53858 1.70256 1.21602 1.03378 1.26234 1.22901 1.00164 0.99537 0.82228 1.21679 1.00175 0.95258 0.97448 1.21223 0.99720 0.95176 0.93783 0.91699 1.20830 0.95280 0.94688 0.85815 1.42581 1.56706 1.37609 1.01650 1.19624 1.22253 1.10593 0.85237 0.91032 1.25547 1.00598 0.99103 1.01501 1.69818 1.37016 1.25914 1.29126 0.85145 0.76716 0.78084 0.79850 1.21464 1.21980 1.19583 0.92788 0.91967 0.94016 0.90356 0.88997 0.76277 0.89217 0.86496 0.87442 0.71376 0.82976 0.92327 0.92921 0.92794 0.96468 0.96558 0.79303 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.39 71.98 0.60 -3.42 16 2 C -0.09 -2.55 2.72 -10.57 -0.03 -2.58 16 3 H 0.10 2.45 8.14 -2.38 -0.02 2.43 16 4 C 0.12 3.19 5.85 86.51 0.51 3.69 16 5 N -0.59 -17.35 2.40 -822.12 -1.98 -19.33 16 6 C 0.60 17.94 7.67 86.61 0.66 18.60 16 7 O -0.58 -18.94 16.33 -4.13 -0.07 -19.01 16 8 C -0.08 -2.05 6.71 40.40 0.27 -1.78 16 9 C 0.06 1.11 11.30 83.53 0.94 2.05 16 10 N -0.45 -6.09 3.16 -662.75 -2.09 -8.18 16 11 C 0.06 0.18 11.11 127.77 1.42 1.60 16 12 C 0.38 7.41 9.03 179.84 1.62 9.04 16 13 O -0.44 -6.69 13.55 -87.59 -1.19 -7.88 16 14 N -0.48 -12.68 7.71 -303.16 -2.34 -15.02 16 15 C 0.07 2.28 6.32 86.36 0.55 2.82 16 16 C -0.11 -3.82 4.91 30.67 0.15 -3.67 16 17 C -0.08 -2.79 1.96 -10.77 -0.02 -2.81 16 18 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 19 C 0.16 6.85 5.18 86.38 0.45 7.30 16 20 N -0.74 -39.62 5.32 -343.46 -1.83 -41.44 16 21 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 24 N -0.97 -60.61 13.06 21.65 0.28 -60.33 16 25 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 26 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 29 H 0.05 1.63 6.58 -2.39 -0.02 1.61 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.34 5.97 -2.39 -0.01 1.32 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.09 2.47 7.04 -2.39 -0.02 2.45 16 34 H 0.22 2.50 8.06 -2.91 -0.02 2.47 16 35 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.12 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.43 1.83 9.06 -74.06 -0.67 1.16 16 39 H 0.15 4.74 3.66 -53.76 -0.20 4.54 16 40 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.98 6.34 -2.39 -0.02 1.97 16 42 H 0.05 2.22 7.15 -2.39 -0.02 2.20 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.02 0.72 6.74 -2.39 -0.02 0.71 16 45 H 0.37 21.07 6.85 -92.71 -0.64 20.43 16 46 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -79.59 365.90 0.79 -78.80 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -0.47 Total: 29.46 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 8.43 Total: 13.40 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -7.95 Total: -144.30 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.25 Total: -26.88 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -79.59 0.79 -78.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185086719.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.372 kcal (2) G-P(sol) polarization free energy of solvation -79.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds