Wall clock time and date at job start Tue Mar 31 2020 14:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.50248 * 2 1 4 4 C 1.53188 * 109.49695 * 239.93059 * 2 1 3 5 5 N 1.46929 * 108.77738 * 185.41419 * 4 2 1 6 6 C 1.34777 * 120.63296 * 233.63747 * 5 4 2 7 7 O 1.21639 * 120.00004 * 172.71608 * 6 5 4 8 8 C 1.47251 * 119.99975 * 352.71117 * 6 5 4 9 9 C 1.36250 * 126.16734 * 172.66988 * 8 6 5 10 10 N 1.36341 * 106.88954 * 179.97438 * 9 8 6 11 11 C 1.46493 * 126.19861 * 179.97438 * 10 9 8 12 12 C 1.36170 * 107.59979 * 0.02562 * 10 9 8 13 13 O 1.35459 * 125.55139 * 180.02562 * 12 10 9 14 14 N 1.30705 * 108.89655 * 359.74163 * 12 10 9 15 15 C 1.46928 * 118.73624 * 53.61156 * 5 4 2 16 16 C 1.53189 * 108.77561 * 306.39100 * 15 5 4 17 17 C 1.53042 * 109.49598 * 120.06456 * 2 1 3 18 18 H 1.08997 * 109.43384 * 61.27668 * 17 2 1 19 19 C 1.53001 * 109.48461 * 301.31853 * 17 2 1 20 20 N 1.46501 * 109.46988 * 174.91563 * 19 17 2 21 21 C 1.36930 * 119.99988 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00355 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00337 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00168 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 119.99860 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47522 * 89.99415 * 25 23 21 27 27 H 1.48498 * 109.46839 * 210.00043 * 25 23 21 28 28 H 1.48504 * 109.46723 * 329.99744 * 25 23 21 29 29 H 1.09006 * 109.47078 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47310 * 300.06349 * 1 2 3 31 31 H 1.08997 * 109.47173 * 60.06767 * 1 2 3 32 32 H 1.09001 * 109.58810 * 65.63210 * 4 2 1 33 33 H 1.09003 * 109.59156 * 305.20412 * 4 2 1 34 34 H 1.07996 * 126.55197 * 359.96029 * 9 8 6 35 35 H 1.09004 * 109.46782 * 90.00768 * 11 10 9 36 36 H 1.09001 * 109.47390 * 209.99905 * 11 10 9 37 37 H 1.09000 * 109.47444 * 330.00524 * 11 10 9 38 38 H 0.96697 * 114.00368 * 89.98788 * 13 12 10 39 39 H 1.08996 * 109.58294 * 186.60773 * 15 5 4 40 40 H 1.08999 * 109.70560 * 66.25006 * 15 5 4 41 41 H 1.09003 * 109.50231 * 174.58802 * 16 15 5 42 42 H 1.08999 * 109.49857 * 294.65303 * 16 15 5 43 43 H 1.08997 * 109.47372 * 294.91587 * 19 17 2 44 44 H 1.08999 * 109.46936 * 54.91702 * 19 17 2 45 45 H 0.96999 * 119.99877 * 359.97438 * 20 19 17 46 46 H 0.97006 * 119.99881 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0413 -0.7235 -1.2497 5 7 3.5046 -0.8289 -1.1698 6 6 4.2812 -0.3851 -2.1779 7 8 5.4901 -0.3552 -2.0466 8 6 3.6662 0.0635 -3.4384 9 6 4.3105 0.6619 -4.4791 10 7 3.3720 0.9088 -5.4368 11 6 3.6077 1.5436 -6.7359 12 6 2.1757 0.4594 -4.9665 13 8 0.9951 0.5238 -5.6275 14 7 2.3532 -0.0496 -3.7758 15 6 4.1052 -1.4268 0.0304 16 6 3.5708 -0.6955 1.2658 17 6 2.0408 -0.7227 1.2486 18 1 1.6961 -1.7567 1.2355 19 6 1.5043 -0.0227 2.4988 20 7 1.8923 -0.7837 3.6890 21 6 1.5211 -0.3464 4.9324 22 1 0.9427 0.5599 5.0357 23 6 1.8882 -1.0677 6.0601 24 7 1.5318 -0.6470 7.2553 25 14 2.8892 -2.6348 5.8816 26 1 4.3365 -2.3055 5.9256 27 1 2.5585 -3.5626 6.9928 28 1 2.5681 -3.2820 4.5841 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8906 32 1 1.7638 -0.1574 -2.1389 33 1 1.6052 -1.7213 -1.2984 34 1 5.3633 0.8962 -4.5347 35 1 3.8491 0.7797 -7.4750 36 1 2.7106 2.0791 -7.0467 37 1 4.4385 2.2442 -6.6526 38 1 0.8094 -0.2497 -6.1772 39 1 5.1895 -1.3247 -0.0141 40 1 3.8397 -2.4824 0.0874 41 1 3.9334 -1.1903 2.1669 42 1 3.9164 0.3382 1.2545 43 1 1.9205 0.9829 2.5590 44 1 0.4173 0.0366 2.4438 45 1 2.4114 -1.5978 3.5962 46 1 1.7887 -1.1509 8.0434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185086720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:13 Heat of formation + Delta-G solvation = -13.762202 kcal Electronic energy + Delta-G solvation = -27794.104446 eV Core-core repulsion = 23912.998741 eV Total energy + Delta-G solvation = -3881.105705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.28373 -41.07870 -39.20074 -38.20662 -36.70392 -35.33070 -34.70447 -33.52571 -32.53490 -30.26877 -28.93377 -27.95376 -27.50176 -25.50694 -24.47832 -22.91812 -22.80528 -22.27913 -21.23131 -20.40735 -19.60782 -19.28615 -18.31978 -17.46353 -16.95534 -16.72549 -16.61156 -16.22274 -15.88546 -15.65610 -15.40955 -15.29911 -15.05612 -14.85858 -14.51558 -14.48313 -14.10460 -13.83457 -13.57249 -13.48494 -13.29096 -13.12289 -12.94290 -12.87518 -12.80888 -12.66372 -12.18071 -11.96551 -11.86929 -11.68339 -11.52836 -11.36240 -11.32741 -10.93366 -10.88054 -10.37404 -9.77980 -9.44375 -9.26680 -8.02241 -5.35137 0.45928 1.04610 1.37694 1.40195 1.41625 1.48723 1.98704 2.35503 2.48941 2.77063 3.28973 3.52372 3.61475 3.70186 3.82112 3.84208 3.99918 4.07654 4.11403 4.31066 4.37860 4.42291 4.48612 4.55253 4.64505 4.70699 4.72620 4.81545 4.84272 4.87913 4.95109 5.02519 5.07683 5.10834 5.19201 5.25231 5.36086 5.42077 5.57436 5.62147 5.74221 5.76614 6.21927 6.36741 6.61693 6.67288 7.08648 7.14146 7.85085 8.05476 9.19527 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.025426 B = 0.002787 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.975079 B =10043.614043 C =10752.488449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.060 0.940 4 C 0.097 3.903 5 N -0.596 5.596 6 C 0.597 3.403 7 O -0.580 6.580 8 C -0.078 4.078 9 C 0.061 3.939 10 N -0.455 5.455 11 C 0.060 3.940 12 C 0.383 3.617 13 O -0.441 6.441 14 N -0.478 5.478 15 C 0.115 3.885 16 C -0.121 4.121 17 C -0.083 4.083 18 H 0.076 0.924 19 C 0.160 3.840 20 N -0.756 5.756 21 C -0.233 4.233 22 H 0.054 0.946 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.955 3.045 26 H -0.278 1.278 27 H -0.294 1.294 28 H -0.249 1.249 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.143 0.857 33 H 0.069 0.931 34 H 0.215 0.785 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.426 0.574 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.013 0.987 44 H 0.034 0.966 45 H 0.366 0.634 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 1.016 -37.805 37.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.078 0.922 4 C -0.025 4.025 5 N -0.326 5.326 6 C 0.387 3.613 7 O -0.461 6.461 8 C -0.205 4.205 9 C -0.078 4.078 10 N -0.148 5.148 11 C -0.080 4.080 12 C 0.082 3.918 13 O -0.245 6.245 14 N -0.210 5.210 15 C -0.008 4.008 16 C -0.159 4.159 17 C -0.102 4.102 18 H 0.094 0.906 19 C 0.034 3.966 20 N -0.402 5.402 21 C -0.364 4.364 22 H 0.072 0.928 23 C -0.257 4.257 24 N -0.636 5.636 25 Si 0.782 3.218 26 H -0.204 1.204 27 H -0.221 1.221 28 H -0.174 1.174 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.231 0.769 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.287 0.713 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.051 0.949 45 H 0.200 0.800 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.712 1.415 -37.061 37.187 hybrid contribution 0.925 -0.775 0.255 1.233 sum 3.637 0.641 -36.806 36.991 Atomic orbital electron populations 1.21758 0.93282 1.02601 1.02149 1.21387 0.96943 0.99025 0.93535 0.92163 1.22705 0.77183 1.02128 1.00500 1.47988 1.08231 1.59206 1.17211 1.17258 0.85333 0.76330 0.82426 1.90756 1.14806 1.58006 1.82563 1.20166 0.90451 1.12517 0.97357 1.22929 0.96602 1.00309 0.87999 1.46054 1.06770 1.45240 1.16731 1.22537 1.05890 0.99807 0.79801 1.20560 0.81665 1.00259 0.89345 1.84871 1.28364 1.47911 1.63369 1.70539 1.16289 1.22346 1.11783 1.21626 0.98989 0.97031 0.83118 1.21846 0.95711 1.00847 0.97491 1.21317 0.94831 1.00137 0.93921 0.90590 1.20876 0.97260 0.93556 0.84898 1.42727 1.66305 1.28887 1.02255 1.19038 1.27029 1.06300 0.84065 0.92838 1.25530 1.02736 1.02838 0.94614 1.69894 1.53148 1.42546 0.97995 0.85408 0.78782 0.79752 0.77902 1.20400 1.22105 1.17367 0.91901 0.92836 0.91178 0.84034 0.91305 0.76851 0.87934 0.87851 0.87340 0.71314 0.89786 0.90064 0.91313 0.92708 0.96897 0.94861 0.80046 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.82 71.98 0.63 -2.73 16 2 C -0.09 -2.39 2.41 -10.72 -0.03 -2.41 16 3 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 4 C 0.10 2.40 5.37 86.36 0.46 2.86 16 5 N -0.60 -16.49 2.97 -822.96 -2.45 -18.94 16 6 C 0.60 17.15 7.67 86.61 0.66 17.81 16 7 O -0.58 -19.43 16.31 -4.15 -0.07 -19.50 16 8 C -0.08 -1.77 6.65 40.40 0.27 -1.50 16 9 C 0.06 0.94 11.30 83.53 0.94 1.89 16 10 N -0.45 -4.79 3.16 -662.75 -2.09 -6.88 16 11 C 0.06 0.04 11.11 127.77 1.42 1.46 16 12 C 0.38 5.64 9.03 179.84 1.62 7.27 16 13 O -0.44 -4.07 13.55 -87.57 -1.19 -5.26 16 14 N -0.48 -10.05 7.81 -303.15 -2.37 -12.41 16 15 C 0.11 3.21 6.44 86.36 0.56 3.77 16 16 C -0.12 -3.80 5.25 30.67 0.16 -3.63 16 17 C -0.08 -2.62 1.73 -10.76 -0.02 -2.64 16 18 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 19 C 0.16 6.43 5.41 86.38 0.47 6.90 16 20 N -0.76 -36.85 5.12 -343.45 -1.76 -38.61 16 21 C -0.23 -13.87 10.47 84.03 0.88 -12.99 16 22 H 0.05 3.49 8.06 -2.91 -0.02 3.46 16 23 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 24 N -0.99 -64.94 13.97 21.65 0.30 -64.64 16 25 Si 0.95 46.77 27.74 68.60 1.90 48.67 16 26 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 27 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.25 -10.96 6.52 99.48 0.65 -10.31 16 29 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 30 H 0.05 1.43 6.30 -2.39 -0.02 1.41 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.14 3.49 4.13 -18.71 -0.08 3.42 16 33 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.21 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.10 -0.30 8.14 -2.38 -0.02 -0.31 16 36 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 37 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.43 -0.51 9.06 -74.06 -0.67 -1.18 16 39 H 0.08 2.48 7.00 -2.39 -0.02 2.46 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.30 7.15 -2.39 -0.02 2.29 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.03 1.35 6.14 -2.39 -0.01 1.33 16 45 H 0.37 16.90 4.71 -92.71 -0.44 16.47 16 46 H 0.26 16.14 8.31 -92.70 -0.77 15.36 16 Total: -1.00 -82.81 366.99 0.57 -82.24 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: -0.22 Total: 22.83 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 8.51 Total: 12.50 kcal Atomic # 7 Polarization: -133.12 SS G_CDS: -8.36 Total: -141.48 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.25 Total: -24.76 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.67 kcal Total: -82.81 0.57 -82.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185086720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.478 kcal (2) G-P(sol) polarization free energy of solvation -82.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds