Wall clock time and date at job start Tue Mar 31 2020 14:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52306 * 2 1 4 4 C 1.53191 * 109.49703 * 120.08235 * 2 1 3 5 5 N 1.46925 * 108.77391 * 65.32086 * 4 2 1 6 6 C 1.34781 * 120.62690 * 233.63060 * 5 4 2 7 7 O 1.21629 * 120.00034 * 353.61804 * 6 5 4 8 8 C 1.47256 * 119.99950 * 173.62232 * 6 5 4 9 9 C 1.36241 * 126.16663 * 173.37932 * 8 6 5 10 10 N 1.36338 * 106.88756 * 179.84475 * 9 8 6 11 11 C 1.46508 * 126.19946 * 180.15365 * 10 9 8 12 12 C 1.36169 * 107.60402 * 0.41375 * 10 9 8 13 13 O 1.35451 * 125.55404 * 179.74042 * 12 10 9 14 14 N 1.30698 * 108.89135 * 359.73899 * 12 10 9 15 15 C 1.46925 * 118.74293 * 53.60498 * 5 4 2 16 16 C 1.53193 * 108.77656 * 306.39464 * 15 5 4 17 17 C 1.53037 * 109.31334 * 54.63120 * 16 15 5 18 18 H 1.09000 * 109.46023 * 58.65800 * 17 16 15 19 19 C 1.52999 * 109.45136 * 178.62488 * 17 16 15 20 20 N 1.46507 * 109.46998 * 295.03339 * 19 17 16 21 21 C 1.36934 * 119.99999 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00009 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99857 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99782 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99842 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47363 * 90.00281 * 25 23 21 27 27 H 1.48499 * 109.47163 * 210.00140 * 25 23 21 28 28 H 1.48503 * 109.47238 * 330.00123 * 25 23 21 29 29 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47185 * 300.07752 * 1 2 3 31 31 H 1.08998 * 109.47236 * 60.07998 * 1 2 3 32 32 H 1.08998 * 109.58519 * 185.09956 * 4 2 1 33 33 H 1.08998 * 109.58860 * 305.38731 * 4 2 1 34 34 H 1.08005 * 126.55678 * 359.96929 * 9 8 6 35 35 H 1.08999 * 109.46611 * 270.28328 * 11 10 9 36 36 H 1.09003 * 109.46959 * 30.28247 * 11 10 9 37 37 H 1.08999 * 109.46934 * 150.28238 * 11 10 9 38 38 H 0.96702 * 114.00009 * 270.02759 * 13 12 10 39 39 H 1.08997 * 109.58552 * 66.18216 * 15 5 4 40 40 H 1.09004 * 109.58974 * 186.60514 * 15 5 4 41 41 H 1.09005 * 109.49565 * 294.68151 * 16 15 5 42 42 H 1.09002 * 109.49954 * 174.58532 * 16 15 5 43 43 H 1.09002 * 109.47261 * 55.03085 * 19 17 16 44 44 H 1.08995 * 109.47402 * 175.03592 * 19 17 16 45 45 H 0.97001 * 119.99412 * 0.02562 * 20 19 17 46 46 H 0.96998 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1382 1.1694 6 6 0.9740 -2.7219 2.1778 7 8 0.7806 -2.1134 3.2129 8 6 0.4680 -4.0965 2.0261 9 6 -0.1170 -4.8497 2.9990 10 7 -0.4361 -6.0486 2.4336 11 6 -1.0879 -7.1758 3.1050 12 6 -0.0339 -6.0106 1.1332 13 8 -0.1706 -7.0168 0.2368 14 7 0.5056 -4.8451 0.8909 15 6 2.0140 -2.9040 -0.0309 16 6 1.5031 -2.1557 -1.2662 17 6 2.0408 -0.7230 -1.2484 18 1 3.1305 -0.7443 -1.2354 19 6 1.5604 0.0170 -2.4984 20 7 2.1470 -0.6035 -3.6889 21 6 1.8579 -0.1078 -4.9323 22 1 1.1978 0.7408 -5.0352 23 6 2.4142 -0.6954 -6.0602 24 7 3.2190 -1.7292 -5.9346 25 14 2.0204 -0.0188 -7.7562 26 1 3.0132 1.0256 -8.1153 27 1 2.0761 -1.1182 -8.7529 28 1 0.6589 0.5741 -7.7488 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 3.1274 -0.6464 1.2979 33 1 1.6027 -0.2716 2.1390 34 1 -0.2958 -4.5531 4.0220 35 1 -0.3301 -7.8242 3.5447 36 1 -1.7449 -6.8007 3.8897 37 1 -1.6737 -7.7411 2.3801 38 1 0.5798 -7.6262 0.2119 39 1 3.0979 -3.0043 -0.0869 40 1 1.5554 -3.8919 0.0135 41 1 0.4133 -2.1354 -1.2542 42 1 1.8481 -2.6627 -2.1673 43 1 0.4734 -0.0383 -2.5581 44 1 1.8687 1.0610 -2.4436 45 1 2.7396 -1.3658 -3.5964 46 1 3.6074 -2.1400 -6.7228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185086721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:17 Heat of formation + Delta-G solvation = 15.861105 kcal Electronic energy + Delta-G solvation = -28040.822263 eV Core-core repulsion = 24161.001120 eV Total energy + Delta-G solvation = -3879.821142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53723 -39.99071 -37.95911 -37.47614 -34.95526 -34.51123 -33.08015 -31.55107 -30.14116 -29.47092 -27.99830 -26.82893 -26.36206 -23.86700 -22.87497 -22.72186 -21.77505 -21.12127 -20.00043 -18.69293 -18.18858 -17.44478 -16.94005 -16.68648 -15.93099 -15.63400 -15.28629 -14.93260 -14.76481 -14.55733 -14.11652 -13.85053 -13.71925 -13.49642 -13.47735 -13.25929 -12.92355 -12.71570 -12.44272 -12.27586 -12.21298 -12.02812 -11.39387 -11.23211 -10.92971 -10.81618 -10.62971 -10.47991 -10.22769 -10.18176 -10.09302 -9.98861 -9.88559 -9.52285 -9.16010 -8.85796 -8.75966 -8.30244 -6.80003 -5.67738 -2.94841 1.26691 1.80455 2.05727 3.06679 3.42361 3.49177 3.51788 3.54136 3.55914 4.21377 4.29337 4.56675 4.67011 4.71917 4.87125 5.02528 5.14401 5.16983 5.21899 5.50484 5.52086 5.57624 5.66012 5.67607 5.86711 5.88940 5.95149 6.00790 6.07897 6.16242 6.20767 6.28994 6.39287 6.43716 6.54898 6.59959 6.70398 6.81532 6.86778 7.01405 7.11962 7.24531 7.37250 7.65526 7.78587 8.28889 8.51966 9.62779 10.23084 10.57946 11.55443 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003191 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.075741 B = 8773.645608 C =10195.311660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.080 0.920 4 C 0.117 3.883 5 N -0.586 5.586 6 C 0.602 3.398 7 O -0.554 6.554 8 C -0.038 4.038 9 C 0.040 3.960 10 N -0.465 5.465 11 C 0.068 3.932 12 C 0.381 3.619 13 O -0.438 6.438 14 N -0.445 5.445 15 C 0.064 3.936 16 C -0.118 4.118 17 C -0.091 4.091 18 H 0.069 0.931 19 C 0.159 3.841 20 N -0.731 5.731 21 C -0.234 4.234 22 H 0.068 0.932 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.195 0.805 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.404 0.596 39 H 0.056 0.944 40 H 0.150 0.850 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.411 -12.277 22.448 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.098 0.902 4 C -0.006 4.006 5 N -0.316 5.316 6 C 0.389 3.611 7 O -0.433 6.433 8 C -0.167 4.167 9 C -0.097 4.097 10 N -0.159 5.159 11 C -0.075 4.075 12 C 0.081 3.919 13 O -0.239 6.239 14 N -0.175 5.175 15 C -0.058 4.058 16 C -0.157 4.157 17 C -0.110 4.110 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.086 0.914 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.212 0.788 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.261 0.739 39 H 0.075 0.925 40 H 0.166 0.834 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.217 0.783 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.869 -11.547 21.934 25.722 hybrid contribution 0.158 -0.542 -0.423 0.706 sum -6.711 -12.089 21.510 25.571 Atomic orbital electron populations 1.21861 0.95036 1.02068 1.01236 1.21459 0.96578 0.99266 0.94389 0.90214 1.21696 0.99426 0.80382 0.99059 1.47886 1.54082 1.11287 1.18363 1.16844 0.77618 0.83441 0.83168 1.90766 1.60133 1.64316 1.28063 1.20456 1.09417 0.96667 0.90129 1.22597 1.01999 0.84905 1.00158 1.45869 1.46007 1.14016 1.10042 1.22157 0.98602 0.87652 0.99054 1.20638 1.00880 0.90192 0.80166 1.84918 1.46452 1.38332 1.54187 1.70539 1.19673 1.01935 1.25344 1.23026 1.00217 0.99451 0.83093 1.21854 1.01105 0.95204 0.97489 1.21340 1.00088 0.95317 0.94218 0.91296 1.20714 0.95845 0.94502 0.85820 1.42391 1.56777 1.37562 1.00836 1.19240 1.22743 1.10641 0.83938 0.91359 1.24712 1.00285 0.98469 0.97709 1.69657 1.35850 1.24458 1.28390 0.86207 0.77752 0.77735 0.84632 1.21855 1.21855 1.20857 0.92468 0.93489 0.92059 0.91608 0.89345 0.78811 0.90072 0.88995 0.88813 0.73883 0.92536 0.83408 0.91709 0.89916 0.96168 0.96697 0.78265 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.38 37.16 0.31 -1.83 16 2 C -0.10 -1.42 2.72 -90.50 -0.25 -1.67 16 3 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.12 1.63 5.80 -3.71 -0.02 1.61 16 5 N -0.59 -8.66 2.41 -174.10 -0.42 -9.08 16 6 C 0.60 9.09 7.67 -12.59 -0.10 8.99 16 7 O -0.55 -9.28 16.33 5.25 0.09 -9.20 16 8 C -0.04 -0.50 6.71 -83.06 -0.56 -1.06 16 9 C 0.04 0.39 11.30 -16.27 -0.18 0.20 16 10 N -0.46 -3.65 3.16 -125.77 -0.40 -4.05 16 11 C 0.07 0.21 11.11 59.85 0.66 0.88 16 12 C 0.38 3.94 9.03 -89.17 -0.81 3.13 16 13 O -0.44 -3.59 13.55 -18.04 -0.24 -3.83 16 14 N -0.44 -5.85 7.70 -11.22 -0.09 -5.94 16 15 C 0.06 0.97 6.32 -3.71 -0.02 0.94 16 16 C -0.12 -2.03 4.90 -26.61 -0.13 -2.16 16 17 C -0.09 -1.56 1.96 -90.58 -0.18 -1.74 16 18 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 19 C 0.16 3.35 5.19 -4.04 -0.02 3.33 16 20 N -0.73 -19.09 5.32 -59.90 -0.32 -19.41 16 21 C -0.23 -6.76 9.99 -15.06 -0.15 -6.91 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -28.76 13.06 55.49 0.72 -28.04 16 25 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.06 0.91 5.97 -51.93 -0.31 0.60 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.93 6.58 -51.93 -0.34 0.59 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.09 1.24 7.05 -51.93 -0.37 0.88 16 34 H 0.19 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.40 1.21 9.06 45.56 0.41 1.62 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.15 2.24 3.65 -78.37 -0.29 1.95 16 41 H 0.06 1.17 6.33 -51.93 -0.33 0.84 16 42 H 0.08 1.61 7.15 -51.93 -0.37 1.24 16 43 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.38 10.43 6.84 -40.82 -0.28 10.15 16 46 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 365.84 15.07 5.51 5.51 Total: -1.00 -36.50 365.84 -7.69 -44.20 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.99 Total: 8.75 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -1.53 Total: 3.13 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: -0.50 Total: -66.51 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.16 Total: -13.03 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.50 -7.69 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185086721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.057 kcal (2) G-P(sol) polarization free energy of solvation -36.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds