Wall clock time and date at job start Tue Mar 31 2020 14:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.52306 * 2 1 4 4 C 1.53191 * 109.49703 * 120.08235 * 2 1 3 5 5 N 1.46925 * 108.77391 * 65.32086 * 4 2 1 6 6 C 1.34781 * 120.62690 * 233.63060 * 5 4 2 7 7 O 1.21629 * 120.00034 * 353.61804 * 6 5 4 8 8 C 1.47256 * 119.99950 * 173.62232 * 6 5 4 9 9 C 1.36241 * 126.16663 * 173.37932 * 8 6 5 10 10 N 1.36338 * 106.88756 * 179.84475 * 9 8 6 11 11 C 1.46508 * 126.19946 * 180.15365 * 10 9 8 12 12 C 1.36169 * 107.60402 * 0.41375 * 10 9 8 13 13 O 1.35451 * 125.55404 * 179.74042 * 12 10 9 14 14 N 1.30698 * 108.89135 * 359.73899 * 12 10 9 15 15 C 1.46925 * 118.74293 * 53.60498 * 5 4 2 16 16 C 1.53193 * 108.77656 * 306.39464 * 15 5 4 17 17 C 1.53037 * 109.31334 * 54.63120 * 16 15 5 18 18 H 1.09000 * 109.46023 * 58.65800 * 17 16 15 19 19 C 1.52999 * 109.45136 * 178.62488 * 17 16 15 20 20 N 1.46507 * 109.46998 * 295.03339 * 19 17 16 21 21 C 1.36934 * 119.99999 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00009 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99857 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99782 * 0.02562 * 23 21 20 25 25 Si 1.86792 * 119.99842 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47363 * 90.00281 * 25 23 21 27 27 H 1.48499 * 109.47163 * 210.00140 * 25 23 21 28 28 H 1.48503 * 109.47238 * 330.00123 * 25 23 21 29 29 H 1.09005 * 109.46752 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47185 * 300.07752 * 1 2 3 31 31 H 1.08998 * 109.47236 * 60.07998 * 1 2 3 32 32 H 1.08998 * 109.58519 * 185.09956 * 4 2 1 33 33 H 1.08998 * 109.58860 * 305.38731 * 4 2 1 34 34 H 1.08005 * 126.55678 * 359.96929 * 9 8 6 35 35 H 1.08999 * 109.46611 * 270.28328 * 11 10 9 36 36 H 1.09003 * 109.46959 * 30.28247 * 11 10 9 37 37 H 1.08999 * 109.46934 * 150.28238 * 11 10 9 38 38 H 0.96702 * 114.00009 * 270.02759 * 13 12 10 39 39 H 1.08997 * 109.58552 * 66.18216 * 15 5 4 40 40 H 1.09004 * 109.58974 * 186.60514 * 15 5 4 41 41 H 1.09005 * 109.49565 * 294.68151 * 16 15 5 42 42 H 1.09002 * 109.49954 * 174.58532 * 16 15 5 43 43 H 1.09002 * 109.47261 * 55.03085 * 19 17 16 44 44 H 1.08995 * 109.47402 * 175.03592 * 19 17 16 45 45 H 0.97001 * 119.99412 * 0.02562 * 20 19 17 46 46 H 0.96998 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 1.6516 -2.1382 1.1694 6 6 0.9740 -2.7219 2.1778 7 8 0.7806 -2.1134 3.2129 8 6 0.4680 -4.0965 2.0261 9 6 -0.1170 -4.8497 2.9990 10 7 -0.4361 -6.0486 2.4336 11 6 -1.0879 -7.1758 3.1050 12 6 -0.0339 -6.0106 1.1332 13 8 -0.1706 -7.0168 0.2368 14 7 0.5056 -4.8451 0.8909 15 6 2.0140 -2.9040 -0.0309 16 6 1.5031 -2.1557 -1.2662 17 6 2.0408 -0.7230 -1.2484 18 1 3.1305 -0.7443 -1.2354 19 6 1.5604 0.0170 -2.4984 20 7 2.1470 -0.6035 -3.6889 21 6 1.8579 -0.1078 -4.9323 22 1 1.1978 0.7408 -5.0352 23 6 2.4142 -0.6954 -6.0602 24 7 3.2190 -1.7292 -5.9346 25 14 2.0204 -0.0188 -7.7562 26 1 3.0132 1.0256 -8.1153 27 1 2.0761 -1.1182 -8.7529 28 1 0.6589 0.5741 -7.7488 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 3.1274 -0.6464 1.2979 33 1 1.6027 -0.2716 2.1390 34 1 -0.2958 -4.5531 4.0220 35 1 -0.3301 -7.8242 3.5447 36 1 -1.7449 -6.8007 3.8897 37 1 -1.6737 -7.7411 2.3801 38 1 0.5798 -7.6262 0.2119 39 1 3.0979 -3.0043 -0.0869 40 1 1.5554 -3.8919 0.0135 41 1 0.4133 -2.1354 -1.2542 42 1 1.8481 -2.6627 -2.1673 43 1 0.4734 -0.0383 -2.5581 44 1 1.8687 1.0610 -2.4436 45 1 2.7396 -1.3658 -3.5964 46 1 3.6074 -2.1400 -6.7228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185086721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:16 Heat of formation + Delta-G solvation = -11.245782 kcal Electronic energy + Delta-G solvation = -28041.997706 eV Core-core repulsion = 24161.001120 eV Total energy + Delta-G solvation = -3880.996585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.29339 -41.17087 -39.16014 -38.22132 -36.53589 -35.44778 -34.52448 -33.13505 -31.89490 -30.29549 -28.68338 -28.44275 -27.36952 -25.58035 -24.26094 -23.90969 -22.64934 -22.43436 -21.01963 -19.73024 -19.32204 -18.95048 -18.26212 -17.60540 -16.82365 -16.66638 -16.58837 -16.34044 -15.88809 -15.48209 -15.37699 -15.26387 -15.22438 -14.81657 -14.69494 -14.33978 -13.99793 -13.68615 -13.63666 -13.46779 -13.35686 -12.96974 -12.91813 -12.80534 -12.64210 -12.46121 -12.17708 -12.00621 -11.89464 -11.65761 -11.47050 -11.30107 -11.19952 -10.90070 -10.85567 -10.24128 -9.74320 -9.40507 -8.95296 -7.92538 -5.20616 0.48292 1.02792 1.40462 1.47199 1.49309 1.57714 2.05051 2.41234 2.57582 2.76868 3.40336 3.56985 3.69409 3.77936 3.85397 3.89924 4.05423 4.19554 4.29264 4.37056 4.37341 4.42584 4.51522 4.56456 4.68954 4.72194 4.74953 4.82546 4.83803 4.88912 4.97028 5.02149 5.07649 5.22208 5.22469 5.26762 5.34480 5.49584 5.53261 5.59022 5.63226 5.85452 6.29998 6.39853 6.64147 6.67293 7.18625 7.36036 8.13034 8.37497 9.31123 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003191 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.075741 B = 8773.645608 C =10195.311660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.118 3.882 5 N -0.589 5.589 6 C 0.600 3.400 7 O -0.576 6.576 8 C -0.080 4.080 9 C 0.065 3.935 10 N -0.454 5.454 11 C 0.060 3.940 12 C 0.381 3.619 13 O -0.445 6.445 14 N -0.484 5.484 15 C 0.074 3.926 16 C -0.107 4.107 17 C -0.080 4.080 18 H 0.064 0.936 19 C 0.160 3.840 20 N -0.743 5.743 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.075 4.075 24 N -0.968 5.968 25 Si 0.973 3.027 26 H -0.286 1.286 27 H -0.294 1.294 28 H -0.272 1.272 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.221 0.779 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.426 0.574 39 H 0.058 0.942 40 H 0.155 0.845 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.375 0.625 46 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.300 -12.835 23.910 28.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.114 0.886 4 C -0.004 4.004 5 N -0.319 5.319 6 C 0.389 3.611 7 O -0.457 6.457 8 C -0.208 4.208 9 C -0.075 4.075 10 N -0.147 5.147 11 C -0.080 4.080 12 C 0.080 3.920 13 O -0.248 6.248 14 N -0.215 5.215 15 C -0.049 4.049 16 C -0.146 4.146 17 C -0.099 4.099 18 H 0.083 0.917 19 C 0.034 3.966 20 N -0.385 5.385 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.213 1.213 27 H -0.220 1.220 28 H -0.197 1.197 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.237 0.763 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.286 0.714 39 H 0.077 0.923 40 H 0.171 0.829 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.036 0.964 45 H 0.207 0.793 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.775 -12.121 23.420 27.493 hybrid contribution 0.363 -0.466 -0.819 1.010 sum -7.412 -12.586 22.601 26.910 Atomic orbital electron populations 1.21788 0.95048 1.01145 1.01582 1.21416 0.96434 0.99833 0.93220 0.88617 1.21720 1.00161 0.80057 0.98477 1.47905 1.54302 1.11532 1.18186 1.17140 0.76996 0.84260 0.82679 1.90733 1.61069 1.65194 1.28719 1.20310 1.12428 0.96517 0.91498 1.22967 0.99523 0.84583 1.00401 1.46056 1.44939 1.14475 1.09216 1.22546 0.99466 0.86499 0.99486 1.20602 1.00307 0.89956 0.81183 1.84877 1.47853 1.38211 1.53909 1.70249 1.21551 1.03382 1.26278 1.22910 1.00177 0.99560 0.82222 1.21683 1.00177 0.95259 0.97454 1.21224 0.99712 0.95181 0.93787 0.91709 1.20832 0.95286 0.94689 0.85810 1.42582 1.56826 1.37487 1.01652 1.19624 1.22314 1.10529 0.85238 0.91028 1.25548 1.00636 0.99067 1.01507 1.69816 1.37092 1.25825 1.29144 0.85144 0.77958 0.76933 0.79750 1.21327 1.22033 1.19672 0.94012 0.91953 0.92799 0.90429 0.88995 0.76278 0.87824 0.87022 0.88166 0.71352 0.92342 0.82936 0.92906 0.92787 0.96556 0.96450 0.79305 0.94006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 8.38 71.98 0.60 -3.42 16 2 C -0.09 -2.55 2.72 -10.71 -0.03 -2.58 16 3 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.12 3.19 5.80 86.36 0.50 3.69 16 5 N -0.59 -17.36 2.41 -822.97 -1.98 -19.34 16 6 C 0.60 17.94 7.67 86.61 0.66 18.61 16 7 O -0.58 -18.94 16.33 -4.12 -0.07 -19.00 16 8 C -0.08 -2.06 6.71 40.40 0.27 -1.78 16 9 C 0.06 1.11 11.30 83.53 0.94 2.06 16 10 N -0.45 -6.08 3.16 -662.74 -2.09 -8.18 16 11 C 0.06 0.18 11.11 127.77 1.42 1.60 16 12 C 0.38 7.41 9.03 179.84 1.62 9.04 16 13 O -0.44 -6.70 13.55 -87.48 -1.19 -7.88 16 14 N -0.48 -12.67 7.70 -303.17 -2.33 -15.00 16 15 C 0.07 2.27 6.32 86.36 0.55 2.81 16 16 C -0.11 -3.83 4.90 30.67 0.15 -3.68 16 17 C -0.08 -2.79 1.96 -10.77 -0.02 -2.82 16 18 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 19 C 0.16 6.84 5.19 86.38 0.45 7.29 16 20 N -0.74 -39.62 5.32 -343.44 -1.83 -41.45 16 21 C -0.25 -14.29 9.99 84.04 0.84 -13.45 16 22 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 24 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 25 Si 0.97 47.49 29.55 68.60 2.03 49.52 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 29 H 0.04 1.34 5.97 -2.38 -0.01 1.32 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.62 6.58 -2.39 -0.02 1.61 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.09 2.47 7.05 -2.39 -0.02 2.45 16 34 H 0.22 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.43 1.91 9.06 -74.06 -0.67 1.24 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.15 4.75 3.65 -54.59 -0.20 4.55 16 41 H 0.05 1.98 6.33 -2.38 -0.02 1.97 16 42 H 0.05 2.22 7.15 -2.39 -0.02 2.20 16 43 H 0.02 0.72 6.74 -2.39 -0.02 0.71 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.37 21.07 6.84 -92.71 -0.63 20.44 16 46 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -79.44 365.84 0.78 -78.66 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.47 Total: 29.64 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 8.43 Total: 13.37 kcal Atomic # 7 Polarization: -136.35 SS G_CDS: -7.96 Total: -144.31 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.25 Total: -26.89 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -79.44 0.78 -78.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185086721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.417 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds